RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 ADGRB2O60241 1585 aa10.2□□□□□ -0.78
TRAF3-206ENST00000558880 MLLT3P42568 568 aaPredicted RBP10.2□□□□□ -0.78
TRAF3-206ENST00000558880 LSM11P83369 360 aaKnown RBP eCLIP10.2□□□□□ -0.78
TRAF3-206ENST00000558880 MINK1Q8N4C8 1332 aaPredicted RBP10.2□□□□□ -0.78
TRAF3-206ENST00000558880 SHPRHQ149N8 1683 aa10.19□□□□□ -0.78
TRAF3-206ENST00000558880 SEMA3EO15041 775 aa10.19□□□□□ -0.78
TRAF3-206ENST00000558880 C8orf37Q96NL8 207 aa10.19□□□□□ -0.78
TRAF3-206ENST00000558880 EPAS1Q99814 870 aa10.19□□□□□ -0.78
TRAF3-206ENST00000558880 PLSCR2Q9NRY7 297 aa10.19□□□□□ -0.78
TRAF3-206ENST00000558880 EIF3AQ14152 1382 aaKnown RBP10.18□□□□□ -0.78
TRAF3-206ENST00000558880 WASHC2AQ641Q2 1341 aa10.18□□□□□ -0.78
TRAF3-206ENST00000558880 WASLO00401 505 aaPredicted RBP10.18□□□□□ -0.78
TRAF3-206ENST00000558880 PTPREP23469 700 aa10.18□□□□□ -0.78
TRAF3-206ENST00000558880 PRIM1P49642 420 aaKnown RBP10.18□□□□□ -0.78
TRAF3-206ENST00000558880 FBXW7Q969H0 707 aa10.18□□□□□ -0.78
TRAF3-206ENST00000558880 POGKQ9P215 609 aa10.18□□□□□ -0.78
TRAF3-206ENST00000558880 NALCNQ8IZF0 1738 aa10.18□□□□□ -0.78
TRAF3-206ENST00000558880 KIF7Q2M1P5 1343 aa10.17□□□□□ -0.78
TRAF3-206ENST00000558880 CDK19Q9BWU1 502 aa10.17□□□□□ -0.78
TRAF3-206ENST00000558880 C19orf44Q9H6X5 657 aa10.17□□□□□ -0.78
TRAF3-206ENST00000558880 QTRT2Q9H974 415 aaKnown RBP10.17□□□□□ -0.78
TRAF3-206ENST00000558880 ATP7BP35670 1465 aa10.17□□□□□ -0.78
TRAF3-206ENST00000558880 MST1RQ04912 1400 aa10.16□□□□□ -0.78
TRAF3-206ENST00000558880 MAP3K7O43318 606 aa10.16□□□□□ -0.78
TRAF3-206ENST00000558880 RBM6P78332 1123 aaKnown RBP10.16□□□□□ -0.78
TRAF3-206ENST00000558880 CDC42BPGQ6DT37 1551 aa10.16□□□□□ -0.78
TRAF3-206ENST00000558880 DCCP43146 1447 aa10.16□□□□□ -0.78
TRAF3-206ENST00000558880 QRICH2Q9H0J4 1663 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 CCDC7Q96M83 1385 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 USP32Q8NFA0 1604 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 ATF3P18847 181 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 TSR1Q2NL82 804 aaKnown RBP10.15□□□□□ -0.78
TRAF3-206ENST00000558880 SPNS2Q8IVW8 549 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 PUS7Q96PZ0 661 aaKnown RBP10.15□□□□□ -0.78
TRAF3-206ENST00000558880 CD163L1Q9NR16 1453 aa10.15□□□□□ -0.78
TRAF3-206ENST00000558880 AHDC1Q5TGY3 1603 aaPredicted RBP10.15□□□□□ -0.79
TRAF3-206ENST00000558880 ATAD2Q6PL18 1390 aa10.14□□□□□ -0.79
TRAF3-206ENST00000558880 COL9A1P20849 921 aa10.14□□□□□ -0.79
TRAF3-206ENST00000558880 OSBPP22059 807 aa10.14□□□□□ -0.79
TRAF3-206ENST00000558880 EN1Q05925 392 aaPredicted RBP10.14□□□□□ -0.79
TRAF3-206ENST00000558880 C6orf132Q5T0Z8 1188 aa10.14□□□□□ -0.79
TRAF3-206ENST00000558880 C1orf167Q5SNV9 1468 aa10.14□□□□□ -0.79
TRAF3-206ENST00000558880 TMF1P82094 1093 aa10.13□□□□□ -0.79
TRAF3-206ENST00000558880 NUDT16Q96DE0 195 aaKnown RBP10.13□□□□□ -0.79
TRAF3-206ENST00000558880 ORAI2Q96SN7 254 aa10.13□□□□□ -0.79
TRAF3-206ENST00000558880 EVC2Q86UK5 1308 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 NUTM2FA1L443 756 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 BRINP3Q76B58 766 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 NGLY1Q96IV0 654 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 SLC12A5Q9H2X9 1139 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 ANKARQ7Z5J8 1434 aa10.12□□□□□ -0.79
TRAF3-206ENST00000558880 FMN2Q9NZ56 1722 aa10.11□□□□□ -0.79
TRAF3-206ENST00000558880 PLEKHG3A1L390 1219 aa10.11□□□□□ -0.79
TRAF3-206ENST00000558880 ADAMTS2O95450 1211 aa10.11□□□□□ -0.79
TRAF3-206ENST00000558880 ADGRD1Q6QNK2 874 aa10.11□□□□□ -0.79
TRAF3-206ENST00000558880 CPSF1Q10570 1443 aaKnown RBP10.1□□□□□ -0.79
TRAF3-206ENST00000558880 SSH2Q76I76 1423 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 PPP1R3GB7ZBB8 358 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 SLC24A1O60721 1099 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 CARD14Q9BXL6 1004 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 CDHR5Q9HBB8 845 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 CABP1Q9NZU7 370 aa10.1□□□□□ -0.79
TRAF3-206ENST00000558880 PER1O15534 1290 aaPredicted RBP10.09□□□□□ -0.79
TRAF3-206ENST00000558880 SRPK2P78362 688 aaKnown RBP10.09□□□□□ -0.79
TRAF3-206ENST00000558880 PROX2Q3B8N5 592 aa10.09□□□□□ -0.79
TRAF3-206ENST00000558880 DDX17Q92841 729 aaKnown RBP10.09□□□□□ -0.79
TRAF3-206ENST00000558880 ZBED2Q9BTP6 218 aa10.09□□□□□ -0.79
TRAF3-206ENST00000558880 POLR3AO14802 1390 aaPredicted RBP10.09□□□□□ -0.79
TRAF3-206ENST00000558880 TOPAZ1Q8N9V7 1692 aa10.09□□□□□ -0.79
TRAF3-206ENST00000558880 VPS9D1Q9Y2B5 631 aa10.08□□□□□ -0.8
TRAF3-206ENST00000558880 MYOM1P52179 1685 aa10.08□□□□□ -0.8
TRAF3-206ENST00000558880 PPIP5K1Q6PFW1 1433 aa10.07□□□□□ -0.8
TRAF3-206ENST00000558880 A0A1W2PP64 1363 aa10.07□□□□□ -0.8
TRAF3-206ENST00000558880 TESPA1A2RU30 521 aaPredicted RBP10.07□□□□□ -0.8
TRAF3-206ENST00000558880 PMFBP1Q8TBY8 1022 aa10.07□□□□□ -0.8
TRAF3-206ENST00000558880 LRRC59Q96AG4 307 aaKnown RBP10.07□□□□□ -0.8
TRAF3-206ENST00000558880 USP21Q9UK80 565 aa10.07□□□□□ -0.8
TRAF3-206ENST00000558880 ACEP12821 1306 aa10.07□□□□□ -0.8
TRAF3-206ENST00000558880 PNPLA6Q8IY17 1366 aa10.06□□□□□ -0.8
TRAF3-206ENST00000558880 TK2O00142 265 aa10.06□□□□□ -0.8
TRAF3-206ENST00000558880 MMRN1Q13201 1228 aa10.06□□□□□ -0.8
TRAF3-206ENST00000558880 ESCO1Q5FWF5 840 aa10.06□□□□□ -0.8
TRAF3-206ENST00000558880 ANKRD36BQ8N2N9 1353 aa10.05□□□□□ -0.8
TRAF3-206ENST00000558880 CDCA8Q53HL2 280 aa10.05□□□□□ -0.8
TRAF3-206ENST00000558880 PANK3Q9H999 370 aa10.05□□□□□ -0.8
TRAF3-206ENST00000558880 TRPC5Q9UL62 973 aaPredicted RBP10.05□□□□□ -0.8
TRAF3-206ENST00000558880 PXDNQ92626 1479 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 NINLQ9Y2I6 1382 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 FOXO3O43524 673 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 CCDC125Q86Z20 511 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 USP6P35125 1406 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 SOS2Q07890 1332 aaPredicted RBP10.04□□□□□ -0.8
TRAF3-206ENST00000558880 LRP5O75197 1615 aa10.04□□□□□ -0.8
TRAF3-206ENST00000558880 HRO43593 1189 aa10.03□□□□□ -0.8
TRAF3-206ENST00000558880 DDX10Q13206 875 aaKnown RBP10.03□□□□□ -0.8
TRAF3-206ENST00000558880 RBM26Q5T8P6 1007 aaKnown RBP10.03□□□□□ -0.8
TRAF3-206ENST00000558880 RGPD8O14715 1765 aaPredicted RBP10.03□□□□□ -0.8
TRAF3-206ENST00000558880 NHSL1Q5SYE7 1610 aa10.03□□□□□ -0.8
TRAF3-206ENST00000558880 XPCQ01831 940 aaPredicted RBP10.02□□□□□ -0.81
TRAF3-206ENST00000558880 DEFB132Q7Z7B7 95 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms