RNA–Protein interactions for RNA: ENST00000558763.1

SMAD3-207, Transcript of SMAD family member 3, humanhuman

TSL 2

Gene SMAD3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-207ENST00000558763 RGPD2P0DJD1 1756 aa16.8■□□□□ 0.28
SMAD3-207ENST00000558763 THUMPD2Q9BTF0 503 aaKnown RBP16.78■□□□□ 0.28
SMAD3-207ENST00000558763 BTG4Q9NY30 223 aa16.78■□□□□ 0.28
SMAD3-207ENST00000558763 COL5A2P05997 1499 aaPredicted RBP16.78■□□□□ 0.28
SMAD3-207ENST00000558763 NEFMP07197 916 aa16.78■□□□□ 0.28
SMAD3-207ENST00000558763 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.78■□□□□ 0.28
SMAD3-207ENST00000558763 EYA1Q99502 592 aa16.78■□□□□ 0.28
SMAD3-207ENST00000558763 CT47B1P0C2W7 299 aaPredicted RBP16.77■□□□□ 0.28
SMAD3-207ENST00000558763 ZNF853P0CG23 659 aa16.77■□□□□ 0.28
SMAD3-207ENST00000558763 CSB-PGBD3P0DP91 1061 aa16.77■□□□□ 0.28
SMAD3-207ENST00000558763 EXOSC9Q06265 439 aaKnown RBP16.77■□□□□ 0.28
SMAD3-207ENST00000558763 STRN4Q9NRL3 753 aa16.77■□□□□ 0.28
SMAD3-207ENST00000558763 USHBP1Q8N6Y0 703 aa16.77■□□□□ 0.27
SMAD3-207ENST00000558763 C8orf37Q96NL8 207 aa16.77■□□□□ 0.27
SMAD3-207ENST00000558763 MEX3CQ5U5Q3 659 aaKnown RBP16.75■□□□□ 0.27
SMAD3-207ENST00000558763 NBPF6Q5VWK0 638 aa16.75■□□□□ 0.27
SMAD3-207ENST00000558763 NBPF4Q96M43 638 aa16.75■□□□□ 0.27
SMAD3-207ENST00000558763 FAM208AQ9UK61 1670 aaKnown RBP16.75■□□□□ 0.27
SMAD3-207ENST00000558763 LRRC37A3O60309 1634 aa16.75■□□□□ 0.27
SMAD3-207ENST00000558763 EVA1CP58658 441 aa16.74■□□□□ 0.27
SMAD3-207ENST00000558763 PDE3AQ14432 1141 aa16.74■□□□□ 0.27
SMAD3-207ENST00000558763 IFT57Q9NWB7 429 aa16.74■□□□□ 0.27
SMAD3-207ENST00000558763 NLRP2Q9NX02 1062 aa16.74■□□□□ 0.27
SMAD3-207ENST00000558763 WDR17Q8IZU2 1322 aa16.74■□□□□ 0.27
SMAD3-207ENST00000558763 NRAPQ86VF7 1730 aa16.73■□□□□ 0.27
SMAD3-207ENST00000558763 NGLY1Q96IV0 654 aa16.73■□□□□ 0.27
SMAD3-207ENST00000558763 LMOD3Q0VAK6 560 aa16.73■□□□□ 0.27
SMAD3-207ENST00000558763 BCL2L13Q9BXK5 485 aa16.73■□□□□ 0.27
SMAD3-207ENST00000558763 SLIT2O94813 1529 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 DCTN1Q14203 1278 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 LARP1Q6PKG0 1096 aaKnown RBP16.72■□□□□ 0.27
SMAD3-207ENST00000558763 TOM1L2Q6ZVM7 507 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 TNNQ9UQP3 1299 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 NWD2Q9ULI1 1742 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 NCAPD2Q15021 1401 aa16.72■□□□□ 0.27
SMAD3-207ENST00000558763 CALD1Q05682 793 aaKnown RBP16.71■□□□□ 0.27
SMAD3-207ENST00000558763 SSH1Q8WYL5 1049 aa16.71■□□□□ 0.27
SMAD3-207ENST00000558763 MBIPQ9NS73 344 aa16.71■□□□□ 0.27
SMAD3-207ENST00000558763 CRB1P82279 1406 aa16.7■□□□□ 0.26
SMAD3-207ENST00000558763 RLBP1P12271 317 aa16.7■□□□□ 0.26
SMAD3-207ENST00000558763 GNAI1P63096 354 aa16.7■□□□□ 0.26
SMAD3-207ENST00000558763 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
SMAD3-207ENST00000558763 PANK1Q8TE04 598 aa16.7■□□□□ 0.26
SMAD3-207ENST00000558763 CFAP44Q96MT7 982 aa16.7■□□□□ 0.26
SMAD3-207ENST00000558763 USP35Q9P2H5 1018 aa16.69■□□□□ 0.26
SMAD3-207ENST00000558763 KDM2BQ8NHM5 1336 aa16.69■□□□□ 0.26
SMAD3-207ENST00000558763 FRAT1Q92837 279 aaPredicted RBP16.68■□□□□ 0.26
SMAD3-207ENST00000558763 BCL9LQ86UU0 1499 aa16.67■□□□□ 0.26
SMAD3-207ENST00000558763 MCM10Q7L590 875 aa16.67■□□□□ 0.26
SMAD3-207ENST00000558763 TSPYL6Q8N831 410 aa16.67■□□□□ 0.26
SMAD3-207ENST00000558763 LAS1LQ9Y4W2 734 aaKnown RBP16.67■□□□□ 0.26
SMAD3-207ENST00000558763 UNC5CLQ8IV45 518 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 FNBP4Q8N3X1 1017 aaPredicted RBP16.66■□□□□ 0.26
SMAD3-207ENST00000558763 USP21Q9UK80 565 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 AFF2P51816 1311 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 VAMP4O75379 141 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 CARD10Q9BWT7 1032 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 SMC4Q9NTJ3 1288 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 COG6Q9Y2V7 657 aa16.66■□□□□ 0.26
SMAD3-207ENST00000558763 CCDC9Q9Y3X0 531 aaKnown RBP16.66■□□□□ 0.26
SMAD3-207ENST00000558763 MEGF6O75095 1541 aa16.65■□□□□ 0.26
SMAD3-207ENST00000558763 CHL1O00533 1208 aa16.65■□□□□ 0.26
SMAD3-207ENST00000558763 BRPF1P55201 1214 aaPredicted RBP16.65■□□□□ 0.26
SMAD3-207ENST00000558763 ALDH1L2Q3SY69 923 aa16.65■□□□□ 0.26
SMAD3-207ENST00000558763 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.64■□□□□ 0.25
SMAD3-207ENST00000558763 CANXP27824 592 aaKnown RBP16.64■□□□□ 0.25
SMAD3-207ENST00000558763 ZNF428Q96B54 188 aa16.64■□□□□ 0.25
SMAD3-207ENST00000558763 TRIM27P14373 513 aa16.64■□□□□ 0.25
SMAD3-207ENST00000558763 C8orf58Q8NAV2 365 aa16.64■□□□□ 0.25
SMAD3-207ENST00000558763 GAS2L2Q8NHY3 880 aa16.64■□□□□ 0.25
SMAD3-207ENST00000558763 RAPGEF4Q8WZA2 1011 aa16.64■□□□□ 0.25
SMAD3-207ENST00000558763 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
SMAD3-207ENST00000558763 PARP4Q9UKK3 1724 aaKnown RBP16.62■□□□□ 0.25
SMAD3-207ENST00000558763 SPATA31A1Q5TZJ5 1347 aa16.62■□□□□ 0.25
SMAD3-207ENST00000558763 VIRMAQ69YN4 1812 aaKnown RBP16.62■□□□□ 0.25
SMAD3-207ENST00000558763 SPATA31A5Q5VU36 1347 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 SPATA31A7Q8IWB4 1347 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 WNK3Q9BYP7 1800 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 TATP17735 454 aaPredicted RBP16.61■□□□□ 0.25
SMAD3-207ENST00000558763 ATF7IPQ6VMQ6 1270 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 CLUAP1Q96AJ1 413 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 MAP3K5Q99683 1374 aa16.61■□□□□ 0.25
SMAD3-207ENST00000558763 KIF16BQ96L93 1317 aa16.6■□□□□ 0.25
SMAD3-207ENST00000558763 HTATSF1O43719 755 aaKnown RBP16.6■□□□□ 0.25
SMAD3-207ENST00000558763 TWISTNBQ3B726 338 aaPredicted RBP16.6■□□□□ 0.25
SMAD3-207ENST00000558763 NOB1Q9ULX3 412 aaKnown RBP16.6■□□□□ 0.25
SMAD3-207ENST00000558763 IL2RBP14784 551 aa16.6■□□□□ 0.25
SMAD3-207ENST00000558763 VPS72Q15906 364 aa16.6■□□□□ 0.25
SMAD3-207ENST00000558763 DZIP1LQ8IYY4 767 aaKnown RBP16.6■□□□□ 0.25
SMAD3-207ENST00000558763 MRPL50Q8N5N7 158 aaKnown RBP16.6■□□□□ 0.25
SMAD3-207ENST00000558763 MVPQ14764 893 aaKnown RBP16.59■□□□□ 0.25
SMAD3-207ENST00000558763 KRT24Q2M2I5 525 aa16.59■□□□□ 0.25
SMAD3-207ENST00000558763 ILDR1Q86SU0 546 aaPredicted RBP16.59■□□□□ 0.25
SMAD3-207ENST00000558763 OVOS2A0A0G2JMS6 1433 aa16.59■□□□□ 0.25
SMAD3-207ENST00000558763 CENPQQ7L2Z9 268 aaPredicted RBP16.58■□□□□ 0.25
SMAD3-207ENST00000558763 PKD1L3Q7Z443 1732 aa16.58■□□□□ 0.24
SMAD3-207ENST00000558763 GNAT3A8MTJ3 354 aa16.58■□□□□ 0.24
SMAD3-207ENST00000558763 ELL2O00472 640 aaPredicted RBP16.58■□□□□ 0.24
SMAD3-207ENST00000558763 IL17REQ8NFR9 667 aa16.58■□□□□ 0.24
SMAD3-207ENST00000558763 CEMIPQ8WUJ3 1361 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms