RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 TESK2Q96S53 571 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 CARD10Q9BWT7 1032 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 SLC12A5Q9H2X9 1139 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 AXIN2Q9Y2T1 843 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 BCL9O00512 1426 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 ERBB3P21860 1342 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 ANKRD36BQ8N2N9 1353 aa11.32□□□□□ -0.6
TRAF3-205ENST00000558700 ST20-MTHFSA0A0A6YYL1 179 aa11.32□□□□□ -0.6
TRAF3-205ENST00000558700 MYOM1P52179 1685 aa11.32□□□□□ -0.6
TRAF3-205ENST00000558700 R3HDM1Q15032 1099 aaKnown RBP11.31□□□□□ -0.6
TRAF3-205ENST00000558700 SRCAPQ6ZRS2 3230 aa11.31□□□□□ -0.6
TRAF3-205ENST00000558700 CLSPNQ9HAW4 1339 aa11.3□□□□□ -0.6
TRAF3-205ENST00000558700 TMF1P82094 1093 aa11.29□□□□□ -0.6
TRAF3-205ENST00000558700 GSE1Q14687 1217 aa11.29□□□□□ -0.6
TRAF3-205ENST00000558700 NBPF14Q5TI25 921 aa11.29□□□□□ -0.6
TRAF3-205ENST00000558700 HS6ST3Q8IZP7 471 aa11.29□□□□□ -0.6
TRAF3-205ENST00000558700 RTL1A6NKG5 1358 aa11.28□□□□□ -0.6
TRAF3-205ENST00000558700 CDCA8Q53HL2 280 aa11.28□□□□□ -0.6
TRAF3-205ENST00000558700 NLRP2Q9NX02 1062 aa11.28□□□□□ -0.6
TRAF3-205ENST00000558700 MARCH10Q8NA82 808 aaPredicted RBP11.27□□□□□ -0.61
TRAF3-205ENST00000558700 ANKRD24Q8TF21 1146 aa11.27□□□□□ -0.61
TRAF3-205ENST00000558700 COG3Q96JB2 828 aa11.27□□□□□ -0.61
TRAF3-205ENST00000558700 BCL11BQ9C0K0 894 aaPredicted RBP11.27□□□□□ -0.61
TRAF3-205ENST00000558700 CASZ1Q86V15 1759 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 BTAF1O14981 1849 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 EXOC5O00471 708 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 IL2RBP14784 551 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 TIMELESSQ9UNS1 1208 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 RGPD2P0DJD1 1756 aa11.26□□□□□ -0.61
TRAF3-205ENST00000558700 PLSCR1O15162 318 aa11.25□□□□□ -0.61
TRAF3-205ENST00000558700 DOT1LQ8TEK3 1739 aa11.25□□□□□ -0.61
TRAF3-205ENST00000558700 SHANK3Q9BYB0 1731 aa11.25□□□□□ -0.61
TRAF3-205ENST00000558700 SMG6Q86US8 1419 aaKnown RBP11.25□□□□□ -0.61
TRAF3-205ENST00000558700 ANKRD26Q9UPS8 1709 aa11.24□□□□□ -0.61
TRAF3-205ENST00000558700 IP6K1Q92551 441 aa11.24□□□□□ -0.61
TRAF3-205ENST00000558700 MAP3K19Q56UN5 1328 aa11.24□□□□□ -0.61
TRAF3-205ENST00000558700 PAPPAQ13219 1627 aa11.24□□□□□ -0.61
TRAF3-205ENST00000558700 AMPHP49418 695 aa11.23□□□□□ -0.61
TRAF3-205ENST00000558700 HOXC9P31274 260 aa11.22□□□□□ -0.61
TRAF3-205ENST00000558700 ANO8Q9HCE9 1232 aaPredicted RBP11.22□□□□□ -0.61
TRAF3-205ENST00000558700 NSD3Q9BZ95 1437 aa11.21□□□□□ -0.61
TRAF3-205ENST00000558700 KIF24Q5T7B8 1368 aa11.21□□□□□ -0.61
TRAF3-205ENST00000558700 PTF1AQ7RTS3 328 aa11.21□□□□□ -0.61
TRAF3-205ENST00000558700 LTV1Q96GA3 475 aaPredicted RBP11.21□□□□□ -0.61
TRAF3-205ENST00000558700 PCGF6Q9BYE7 350 aa11.21□□□□□ -0.61
TRAF3-205ENST00000558700 MEGF6O75095 1541 aa11.2□□□□□ -0.62
TRAF3-205ENST00000558700 FLT4P35916 1363 aa11.2□□□□□ -0.62
TRAF3-205ENST00000558700 GGNBP2Q9H3C7 697 aa11.2□□□□□ -0.62
TRAF3-205ENST00000558700 SPON1Q9HCB6 807 aa11.2□□□□□ -0.62
TRAF3-205ENST00000558700 QSER1Q2KHR3 1735 aa11.2□□□□□ -0.62
TRAF3-205ENST00000558700 FYB1O15117 783 aa11.19□□□□□ -0.62
TRAF3-205ENST00000558700 TXNRD1Q16881 649 aa11.19□□□□□ -0.62
TRAF3-205ENST00000558700 ACSBG1Q96GR2 724 aa11.19□□□□□ -0.62
TRAF3-205ENST00000558700 PPP1R1BQ9UD71 204 aaPredicted RBP11.19□□□□□ -0.62
TRAF3-205ENST00000558700 KAT6BQ8WYB5 2073 aa11.19□□□□□ -0.62
TRAF3-205ENST00000558700 LY75O60449 1722 aa11.18□□□□□ -0.62
TRAF3-205ENST00000558700 PKD1L3Q7Z443 1732 aa11.18□□□□□ -0.62
TRAF3-205ENST00000558700 KCNQ2O43526 872 aa11.18□□□□□ -0.62
TRAF3-205ENST00000558700 RRS1Q15050 365 aaKnown RBP11.18□□□□□ -0.62
TRAF3-205ENST00000558700 STK32BQ9NY57 414 aa11.18□□□□□ -0.62
TRAF3-205ENST00000558700 INSRP06213 1382 aa11.17□□□□□ -0.62
TRAF3-205ENST00000558700 CGNL1Q0VF96 1302 aa11.16□□□□□ -0.62
TRAF3-205ENST00000558700 DCAF8Q5TAQ9 597 aa11.16□□□□□ -0.62
TRAF3-205ENST00000558700 DDX54Q8TDD1 881 aaKnown RBP11.16□□□□□ -0.62
TRAF3-205ENST00000558700 MAP2P11137 1827 aaKnown RBP11.16□□□□□ -0.62
TRAF3-205ENST00000558700 TUBGCP6Q96RT7 1819 aa11.15□□□□□ -0.62
TRAF3-205ENST00000558700 RIOK3O14730 519 aaKnown RBP11.15□□□□□ -0.62
TRAF3-205ENST00000558700 FBLN1P23142 703 aa11.15□□□□□ -0.62
TRAF3-205ENST00000558700 SLC15A2Q16348 729 aa11.15□□□□□ -0.62
TRAF3-205ENST00000558700 ZCRB1Q8TBF4 217 aaKnown RBP11.15□□□□□ -0.62
TRAF3-205ENST00000558700 RAPGEF4Q8WZA2 1011 aa11.15□□□□□ -0.62
TRAF3-205ENST00000558700 CCER1Q8TC90 406 aaPredicted RBP11.14□□□□□ -0.63
TRAF3-205ENST00000558700 NCAPD2Q15021 1401 aa11.14□□□□□ -0.63
TRAF3-205ENST00000558700 TOGARAM1Q9Y4F4 1720 aa11.14□□□□□ -0.63
TRAF3-205ENST00000558700 PCDH11XQ9BZA7 1347 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 PCDH11YQ9BZA8 1340 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 TATP17735 454 aaPredicted RBP11.13□□□□□ -0.63
TRAF3-205ENST00000558700 EIF4G2P78344 907 aaKnown RBP eCLIP11.13□□□□□ -0.636e-8■■■■□ 21.2
TRAF3-205ENST00000558700 SLC27A3Q5K4L6 730 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 NBPF6Q5VWK0 638 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 SYTL4Q96C24 671 aaPredicted RBP11.13□□□□□ -0.63
TRAF3-205ENST00000558700 NBPF4Q96M43 638 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 CARD14Q9BXL6 1004 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 C5P01031 1676 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 NSD2O96028 1365 aa11.13□□□□□ -0.63
TRAF3-205ENST00000558700 ZBTB7AO95365 584 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 HSP90AB2PQ58FF8 381 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 USHBP1Q8N6Y0 703 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 RNF25Q96BH1 459 aaPredicted RBP11.12□□□□□ -0.63
TRAF3-205ENST00000558700 POLR3GLQ9BT43 218 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 MTFR1LQ9H019 292 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 EMILIN1Q9Y6C2 1016 aa11.12□□□□□ -0.63
TRAF3-205ENST00000558700 FAM212AQ96EL1 285 aa11.11□□□□□ -0.63
TRAF3-205ENST00000558700 ITGB4P16144 1822 aa11.11□□□□□ -0.63
TRAF3-205ENST00000558700 COL24A1Q17RW2 1714 aa11.1□□□□□ -0.63
TRAF3-205ENST00000558700 HSPA5P11021 654 aaKnown RBP11.1□□□□□ -0.63
TRAF3-205ENST00000558700 PRIM1P49642 420 aaKnown RBP11.1□□□□□ -0.63
TRAF3-205ENST00000558700 ZNF827Q17R98 1081 aa11.1□□□□□ -0.63
TRAF3-205ENST00000558700 PDGFDQ9GZP0 370 aaPredicted RBP11.1□□□□□ -0.63
TRAF3-205ENST00000558700 PLEKHG2Q9H7P9 1386 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms