RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CDK11BP21127 795 aaKnown RBP7.13□□□□□ -1.27
LDLR-209ENST00000558528 PNMA1Q8ND90 353 aa7.13□□□□□ -1.27
LDLR-209ENST00000558528 HELBQ8NG08 1087 aaPredicted RBP7.13□□□□□ -1.27
LDLR-209ENST00000558528 XIRP1Q702N8 1843 aaKnown RBP7.13□□□□□ -1.27
LDLR-209ENST00000558528 CLTCQ00610 1675 aaKnown RBP7.12□□□□□ -1.27
LDLR-209ENST00000558528 LRP5O75197 1615 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 LRP6O75581 1613 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 EIF2AK4Q9P2K8 1649 aaKnown RBP7.12□□□□□ -1.27
LDLR-209ENST00000558528 RPRD2Q5VT52 1461 aaKnown RBP7.12□□□□□ -1.27
LDLR-209ENST00000558528 JCADQ9P266 1359 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 RCCD1A6NED2 376 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 RXRBP28702 533 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 ELOAQ14241 798 aaKnown RBP7.12□□□□□ -1.27
LDLR-209ENST00000558528 RTL5Q5HYW3 569 aaPredicted RBP7.12□□□□□ -1.27
LDLR-209ENST00000558528 SLC52A1Q9NWF4 448 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 IQGAP1P46940 1657 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 ROBO1Q9Y6N7 1651 aa7.12□□□□□ -1.27
LDLR-209ENST00000558528 ATN1P54259 1190 aaPredicted RBP7.11□□□□□ -1.27
LDLR-209ENST00000558528 ANKLE2Q86XL3 938 aa7.11□□□□□ -1.27
LDLR-209ENST00000558528 L3MBTL2Q969R5 705 aa7.11□□□□□ -1.27
LDLR-209ENST00000558528 ZDHHC16Q969W1 377 aa7.11□□□□□ -1.27
LDLR-209ENST00000558528 UNC13BO14795 1591 aa7.11□□□□□ -1.27
LDLR-209ENST00000558528 LMTK2Q8IWU2 1503 aa7.11□□□□□ -1.27
LDLR-209ENST00000558528 ARHGAP31Q2M1Z3 1444 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 KIDINS220Q9ULH0 1771 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 DNAJB2P25686 324 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 FOSBP53539 338 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 VAC14Q08AM6 782 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 SEMA3FQ13275 785 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 ASTLQ6HA08 431 aaPredicted RBP7.1□□□□□ -1.27
LDLR-209ENST00000558528 CDCA7LQ96GN5 454 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 IGSF5Q9NSI5 407 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 TFIP11Q9UBB9 837 aaKnown RBP7.1□□□□□ -1.27
LDLR-209ENST00000558528 MAFBQ9Y5Q3 323 aaPredicted RBP7.1□□□□□ -1.27
LDLR-209ENST00000558528 RGS12O14924 1447 aa7.1□□□□□ -1.27
LDLR-209ENST00000558528 RPGRIP1LQ68CZ1 1315 aa7.09□□□□□ -1.27
LDLR-209ENST00000558528 DDX11L8A8MPP1 907 aa7.09□□□□□ -1.27
LDLR-209ENST00000558528 GALR2O43603 387 aaPredicted RBP7.09□□□□□ -1.27
LDLR-209ENST00000558528 HDGFP51858 240 aaKnown RBP7.09□□□□□ -1.27
LDLR-209ENST00000558528 IQGAP3Q86VI3 1631 aa7.09□□□□□ -1.28
LDLR-209ENST00000558528 SPATA31A6Q5VVP1 1343 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 PRDM15P57071 1507 aaPredicted RBP7.08□□□□□ -1.28
LDLR-209ENST00000558528 ATMINO43313 823 aaPredicted RBP7.08□□□□□ -1.28
LDLR-209ENST00000558528 KDM4AO75164 1064 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 NDUFV2P19404 249 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 C3orf67Q6ZVT6 689 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 DCAF11Q8TEB1 546 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 UCN2Q96RP3 112 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 TRIM34Q9BYJ4 488 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 PCDHB15Q9Y5E8 787 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 PCDHGA4Q9Y5G9 962 aa7.08□□□□□ -1.28
LDLR-209ENST00000558528 ZC3H13Q5T200 1668 aaKnown RBP7.07□□□□□ -1.28
LDLR-209ENST00000558528 ATP9BO43861 1147 aa7.07□□□□□ -1.28
LDLR-209ENST00000558528 EIF4G2P78344 907 aaKnown RBP eCLIP7.07□□□□□ -1.28
LDLR-209ENST00000558528 CABLES1Q8TDN4 633 aa7.07□□□□□ -1.28
LDLR-209ENST00000558528 SIRT1Q96EB6 747 aa7.07□□□□□ -1.28
LDLR-209ENST00000558528 EYA1Q99502 592 aa7.07□□□□□ -1.28
LDLR-209ENST00000558528 COL16A1Q07092 1604 aaPredicted RBP7.07□□□□□ -1.28
LDLR-209ENST00000558528 PHLPP1O60346 1717 aa7.07□□□□□ -1.28
LDLR-209ENST00000558528 UNCXA6NJT0 531 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 NBPF26B4DH59 902 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 GPR37L1O60883 481 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 SEC24BO95487 1268 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 FDX1P10109 184 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 CANXP27824 592 aaKnown RBP7.06□□□□□ -1.28
LDLR-209ENST00000558528 ARID4AP29374 1257 aaPredicted RBP7.06□□□□□ -1.28
LDLR-209ENST00000558528 RGL3Q3MIN7 710 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 TXNDC2Q86VQ3 553 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 TMEM134Q9H6X4 195 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 ATAD2Q6PL18 1390 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 TNRQ92752 1358 aa7.06□□□□□ -1.28
LDLR-209ENST00000558528 CARNS1A5YM72 827 aa7.05□□□□□ -1.28
LDLR-209ENST00000558528 HOXA2O43364 376 aa7.05□□□□□ -1.28
LDLR-209ENST00000558528 THEMISQ8N1K5 641 aaPredicted RBP7.05□□□□□ -1.28
LDLR-209ENST00000558528 NFATC2IPQ8NCF5 419 aa7.05□□□□□ -1.28
LDLR-209ENST00000558528 PRR7Q8TB68 274 aa7.05□□□□□ -1.28
LDLR-209ENST00000558528 HMX1Q9NP08 348 aaPredicted RBP7.05□□□□□ -1.28
LDLR-209ENST00000558528 CEP350Q5VT06 3117 aa7.05□□□□□ -1.28
LDLR-209ENST00000558528 UGGT1Q9NYU2 1555 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 MTMR2Q13614 643 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 ZNF326Q5BKZ1 582 aaKnown RBP7.04□□□□□ -1.28
LDLR-209ENST00000558528 MEX3CQ5U5Q3 659 aaKnown RBP7.04□□□□□ -1.28
LDLR-209ENST00000558528 ZNF454Q8N9F8 522 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 RDH13Q8NBN7 331 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 MRRFQ96E11 262 aaKnown RBP7.04□□□□□ -1.28
LDLR-209ENST00000558528 BCL11AQ9H165 835 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 NHSL1Q5SYE7 1610 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 NLRP1Q9C000 1473 aa7.04□□□□□ -1.28
LDLR-209ENST00000558528 TET3O43151 1660 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 SHPRHQ149N8 1683 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 NOS1P29475 1434 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 ABCC3O15438 1527 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 TRPM2O94759 1503 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 EFCAB6Q5THR3 1501 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 YY1P25490 414 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 CTDSPL2Q05D32 466 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 IDI1Q13907 227 aa7.03□□□□□ -1.28
LDLR-209ENST00000558528 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.03□□□□□ -1.28
LDLR-209ENST00000558528 RBM6P78332 1123 aaKnown RBP7.02□□□□□ -1.29
LDLR-209ENST00000558528 DNAJC14Q6Y2X3 702 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms