RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 ABCF2Q9UG63 623 aa16.43■□□□□ 0.22
SPG11-210ENST00000558319 PTCD1O75127 700 aaKnown RBP16.43■□□□□ 0.22
SPG11-210ENST00000558319 WDR78Q5VTH9 848 aa16.43■□□□□ 0.22
SPG11-210ENST00000558319 ADAMTS2O95450 1211 aa16.43■□□□□ 0.22
SPG11-210ENST00000558319 MCM4P33991 863 aa16.43■□□□□ 0.22
SPG11-210ENST00000558319 CCDC113Q9H0I3 377 aa16.43■□□□□ 0.22
SPG11-210ENST00000558319 TDO2P48775 406 aa16.42■□□□□ 0.22
SPG11-210ENST00000558319 PDCP20941 246 aa16.42■□□□□ 0.22
SPG11-210ENST00000558319 NBPF1Q3BBV0 1214 aa16.42■□□□□ 0.22
SPG11-210ENST00000558319 ZNF530Q6P9A1 599 aaPredicted RBP16.42■□□□□ 0.22
SPG11-210ENST00000558319 GTF2F1P35269 517 aaKnown RBP eCLIP16.41■□□□□ 0.22
SPG11-210ENST00000558319 RNF187Q5TA31 235 aaPredicted RBP16.41■□□□□ 0.22
SPG11-210ENST00000558319 ANKRD18AQ8IVF6 992 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 CFAP45Q9UL16 551 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 IDH1O75874 414 aaKnown RBP16.41■□□□□ 0.22
SPG11-210ENST00000558319 SMARCA5O60264 1052 aaPredicted RBP16.41■□□□□ 0.22
SPG11-210ENST00000558319 GNAI2P04899 355 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 MCM2P49736 904 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 MAP2K1Q02750 393 aaPredicted RBP16.41■□□□□ 0.22
SPG11-210ENST00000558319 KIAA1328Q86T90 577 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 ZSCAN30Q86W11 494 aa16.41■□□□□ 0.22
SPG11-210ENST00000558319 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
SPG11-210ENST00000558319 SHTN1A0MZ66 631 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 CCDC57Q2TAC2 916 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 PLCD3Q8N3E9 789 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 BTBD11A6QL63 1104 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 ZMYND15Q9H091 742 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 WDR33Q9C0J8 1336 aaKnown RBP16.4■□□□□ 0.22
SPG11-210ENST00000558319 GUCY1B3Q02153 619 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 SPATA32Q96LK8 384 aa16.4■□□□□ 0.22
SPG11-210ENST00000558319 KRT85P78386 507 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
SPG11-210ENST00000558319 NEBLO76041 1014 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 GBP2P32456 591 aaPredicted RBP16.39■□□□□ 0.21
SPG11-210ENST00000558319 NF2P35240 595 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 TTLL12Q14166 644 aaPredicted RBP16.39■□□□□ 0.21
SPG11-210ENST00000558319 ZBTB9Q96C00 473 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 NUP62CLQ9H1M0 184 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 CBFA2T2O43439 604 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 BCCIPQ9P287 314 aaKnown RBP eCLIP16.39■□□□□ 0.21
SPG11-210ENST00000558319 LRP2BPQ9P2M1 347 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 CYP46A1Q9Y6A2 500 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 PPP4R3BQ5MIZ7 849 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 GNL3LQ9NVN8 582 aaKnown RBP16.39■□□□□ 0.21
SPG11-210ENST00000558319 CNTLNQ9NXG0 1405 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 SOGA3Q5TF21 947 aa16.39■□□□□ 0.21
SPG11-210ENST00000558319 SCLT1Q96NL6 688 aa16.38■□□□□ 0.21
SPG11-210ENST00000558319 CRACR2AQ9BSW2 395 aa16.38■□□□□ 0.21
SPG11-210ENST00000558319 UPF3BQ9BZI7 483 aaKnown RBP16.38■□□□□ 0.21
SPG11-210ENST00000558319 EZRP15311 586 aaKnown RBP16.38■□□□□ 0.21
SPG11-210ENST00000558319 MINDY4BA8MYZ0 360 aa16.38■□□□□ 0.21
SPG11-210ENST00000558319 SRRTQ9BXP5 876 aaKnown RBP16.38■□□□□ 0.21
SPG11-210ENST00000558319 DACH1Q9UI36 760 aa16.38■□□□□ 0.21
SPG11-210ENST00000558319 UBA5Q9GZZ9 404 aa16.37■□□□□ 0.21
SPG11-210ENST00000558319 EPB41L2O43491 1005 aaKnown RBP16.37■□□□□ 0.21
SPG11-210ENST00000558319 PIP4K2AP48426 406 aaPredicted RBP16.37■□□□□ 0.21
SPG11-210ENST00000558319 PTPN14Q15678 1187 aa16.37■□□□□ 0.21
SPG11-210ENST00000558319 ZNF526Q8TF50 670 aaPredicted RBP16.37■□□□□ 0.21
SPG11-210ENST00000558319 CASQ1P31415 396 aa16.37■□□□□ 0.21
SPG11-210ENST00000558319 JAKMIP1Q96N16 626 aaKnown RBP16.37■□□□□ 0.21
SPG11-210ENST00000558319 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.37■□□□□ 0.213e-6■□□□□ 9.8
SPG11-210ENST00000558319 TRMT1Q9NXH9 659 aaKnown RBP16.37■□□□□ 0.21
SPG11-210ENST00000558319 URI1O94763 535 aaPredicted RBP16.36■□□□□ 0.21
SPG11-210ENST00000558319 PPP2R1AP30153 589 aa16.36■□□□□ 0.21
SPG11-210ENST00000558319 LUC7LQ9NQ29 371 aaKnown RBP16.36■□□□□ 0.21
SPG11-210ENST00000558319 CCDC7Q96M83 1385 aa16.36■□□□□ 0.21
SPG11-210ENST00000558319 IQCEQ6IPM2 695 aa16.36■□□□□ 0.21
SPG11-210ENST00000558319 JARID2Q92833 1246 aaPredicted RBP16.36■□□□□ 0.21
SPG11-210ENST00000558319 SMG6Q86US8 1419 aaKnown RBP16.36■□□□□ 0.21
SPG11-210ENST00000558319 CFAP100Q494V2 611 aa16.36■□□□□ 0.21
SPG11-210ENST00000558319 GAS2L2Q8NHY3 880 aa16.36■□□□□ 0.21
SPG11-210ENST00000558319 STIM1Q13586 685 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 ARHGAP29Q52LW3 1261 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 RAB11FIP4Q86YS3 637 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 CCDC148Q8NFR7 591 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 MIA2Q96PC5 1412 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 CALCOCO1Q9P1Z2 691 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 SRGAP3O43295 1099 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 CCDC144CPQ8IYA2 1237 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 ARHGAP5Q13017 1502 aa16.35■□□□□ 0.21
SPG11-210ENST00000558319 JMYQ8N9B5 988 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 GOPCQ9HD26 462 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 GNAI3P08754 354 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 CA8P35219 290 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 MCM10Q7L590 875 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 PRDM11Q9NQV5 511 aa16.34■□□□□ 0.21
SPG11-210ENST00000558319 CEP57L1Q8IYX8 460 aa16.33■□□□□ 0.2
SPG11-210ENST00000558319 ANKIB1Q9P2G1 1089 aa16.33■□□□□ 0.2
SPG11-210ENST00000558319 KLHL10Q6JEL2 608 aa16.33■□□□□ 0.2
SPG11-210ENST00000558319 FERMT3Q86UX7 667 aa16.33■□□□□ 0.2
SPG11-210ENST00000558319 C16orf45Q96MC5 204 aaPredicted RBP16.33■□□□□ 0.2
SPG11-210ENST00000558319 EIF5P55010 431 aaKnown RBP16.32■□□□□ 0.2
SPG11-210ENST00000558319 MPRIPQ6WCQ1 1025 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 TRIM22Q8IYM9 498 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 UBAC1Q9BSL1 405 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 UBE4AQ14139 1066 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 TAF4BQ92750 862 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 EXOC6BQ9Y2D4 811 aa16.32■□□□□ 0.2
SPG11-210ENST00000558319 NACAP1Q9BZK3 213 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 1191.8 ms