RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 VASPP50552 380 aaPredicted RBP14.05□□□□□ -0.16
USP3-207ENST00000558218 OVOS2A0A0G2JMS6 1433 aa14.05□□□□□ -0.16
USP3-207ENST00000558218 EIF4G2P78344 907 aaKnown RBP eCLIP14.04□□□□□ -0.16
USP3-207ENST00000558218 ANKRD24Q8TF21 1146 aa14.04□□□□□ -0.16
USP3-207ENST00000558218 NLRP2Q9NX02 1062 aa14.04□□□□□ -0.16
USP3-207ENST00000558218 PLSCR1O15162 318 aa14.03□□□□□ -0.16
USP3-207ENST00000558218 IL2RBP14784 551 aa14.03□□□□□ -0.16
USP3-207ENST00000558218 BCL11BQ9C0K0 894 aaPredicted RBP14.03□□□□□ -0.16
USP3-207ENST00000558218 TNS1Q9HBL0 1735 aaKnown RBP14.03□□□□□ -0.16
USP3-207ENST00000558218 LTN1O94822 1766 aa14.03□□□□□ -0.16
USP3-207ENST00000558218 AMPHP49418 695 aa14.02□□□□□ -0.17
USP3-207ENST00000558218 EZH2Q15910 746 aaKnown RBP14.02□□□□□ -0.17
USP3-207ENST00000558218 MARCH10Q8NA82 808 aaPredicted RBP14.02□□□□□ -0.17
USP3-207ENST00000558218 TSPYL2Q9H2G4 693 aaPredicted RBP14.02□□□□□ -0.17
USP3-207ENST00000558218 KIF24Q5T7B8 1368 aa14.01□□□□□ -0.17
USP3-207ENST00000558218 MAP3K19Q56UN5 1328 aa14.01□□□□□ -0.17
USP3-207ENST00000558218 PEAK1Q9H792 1746 aa14.01□□□□□ -0.17
USP3-207ENST00000558218 LRRC37A3O60309 1634 aa14.01□□□□□ -0.17
USP3-207ENST00000558218 WNK3Q9BYP7 1800 aa14□□□□□ -0.17
USP3-207ENST00000558218 HOXC9P31274 260 aa14□□□□□ -0.17
USP3-207ENST00000558218 NBPF14Q5TI25 921 aa14□□□□□ -0.17
USP3-207ENST00000558218 CARD14Q9BXL6 1004 aa14□□□□□ -0.17
USP3-207ENST00000558218 RTL1A6NKG5 1358 aa13.99□□□□□ -0.17
USP3-207ENST00000558218 GGNBP2Q9H3C7 697 aa13.99□□□□□ -0.17
USP3-207ENST00000558218 SBF2Q86WG5 1849 aa13.98□□□□□ -0.17
USP3-207ENST00000558218 FAM208AQ9UK61 1670 aaKnown RBP13.98□□□□□ -0.17
USP3-207ENST00000558218 CGNL1Q0VF96 1302 aa13.97□□□□□ -0.17
USP3-207ENST00000558218 HSPA5P11021 654 aaKnown RBP13.97□□□□□ -0.17
USP3-207ENST00000558218 TNS2Q63HR2 1409 aa13.97□□□□□ -0.17
USP3-207ENST00000558218 GABBR2O75899 941 aa13.96□□□□□ -0.17
USP3-207ENST00000558218 RASEFQ8IZ41 740 aa13.96□□□□□ -0.17
USP3-207ENST00000558218 KLHL34Q8N239 644 aa13.96□□□□□ -0.17
USP3-207ENST00000558218 PHF12Q96QT6 1004 aa13.96□□□□□ -0.17
USP3-207ENST00000558218 FBLN1P23142 703 aa13.95□□□□□ -0.18
USP3-207ENST00000558218 RRS1Q15050 365 aaKnown RBP13.95□□□□□ -0.18
USP3-207ENST00000558218 LTV1Q96GA3 475 aaPredicted RBP13.95□□□□□ -0.18
USP3-207ENST00000558218 RGPD3A6NKT7 1758 aaPredicted RBP13.95□□□□□ -0.18
USP3-207ENST00000558218 RGPD4Q7Z3J3 1758 aa13.95□□□□□ -0.18
USP3-207ENST00000558218 INSRP06213 1382 aa13.95□□□□□ -0.18
USP3-207ENST00000558218 PSDA5PKW4 1024 aaPredicted RBP13.94□□□□□ -0.18
USP3-207ENST00000558218 R3HDM1Q15032 1099 aaKnown RBP13.94□□□□□ -0.18
USP3-207ENST00000558218 NSD3Q9BZ95 1437 aa13.94□□□□□ -0.18
USP3-207ENST00000558218 MYOM1P52179 1685 aa13.94□□□□□ -0.18
USP3-207ENST00000558218 SMG6Q86US8 1419 aaKnown RBP13.93□□□□□ -0.18
USP3-207ENST00000558218 KIF20BQ96Q89 1820 aa13.93□□□□□ -0.18
USP3-207ENST00000558218 RREB1Q92766 1687 aa13.93□□□□□ -0.18
USP3-207ENST00000558218 FLT4P35916 1363 aa13.93□□□□□ -0.18
USP3-207ENST00000558218 HSP90AB2PQ58FF8 381 aa13.92□□□□□ -0.18
USP3-207ENST00000558218 NBPF6Q5VWK0 638 aa13.92□□□□□ -0.18
USP3-207ENST00000558218 ZCRB1Q8TBF4 217 aaKnown RBP13.92□□□□□ -0.18
USP3-207ENST00000558218 NBPF4Q96M43 638 aa13.92□□□□□ -0.18
USP3-207ENST00000558218 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
USP3-207ENST00000558218 LRP5O75197 1615 aa13.91□□□□□ -0.18
USP3-207ENST00000558218 PTF1AQ7RTS3 328 aa13.91□□□□□ -0.18
USP3-207ENST00000558218 PANK3Q9H999 370 aa13.91□□□□□ -0.18
USP3-207ENST00000558218 KCNQ2O43526 872 aa13.9□□□□□ -0.18
USP3-207ENST00000558218 TXNRD1Q16881 649 aa13.9□□□□□ -0.18
USP3-207ENST00000558218 DDX54Q8TDD1 881 aaKnown RBP13.9□□□□□ -0.18
USP3-207ENST00000558218 RAPGEF4Q8WZA2 1011 aa13.9□□□□□ -0.18
USP3-207ENST00000558218 POLR3GLQ9BT43 218 aa13.9□□□□□ -0.18
USP3-207ENST00000558218 ZNF579Q8NAF0 562 aaKnown RBP13.89□□□□□ -0.19
USP3-207ENST00000558218 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
USP3-207ENST00000558218 NUP188Q5SRE5 1749 aa13.89□□□□□ -0.19
USP3-207ENST00000558218 KAT6BQ8WYB5 2073 aa13.89□□□□□ -0.19
USP3-207ENST00000558218 NSD2O96028 1365 aa13.88□□□□□ -0.19
USP3-207ENST00000558218 TATP17735 454 aaPredicted RBP13.88□□□□□ -0.19
USP3-207ENST00000558218 HMGB2P26583 209 aaKnown RBP13.88□□□□□ -0.19
USP3-207ENST00000558218 NUBP1P53384 320 aa13.88□□□□□ -0.19
USP3-207ENST00000558218 POLKQ9UBT6 870 aa13.88□□□□□ -0.19
USP3-207ENST00000558218 NHSQ6T4R5 1651 aa13.88□□□□□ -0.19
USP3-207ENST00000558218 IFNLR1Q8IU57 520 aaPredicted RBP13.87□□□□□ -0.19
USP3-207ENST00000558218 ACSBG1Q96GR2 724 aa13.87□□□□□ -0.19
USP3-207ENST00000558218 EMILIN1Q9Y6C2 1016 aa13.87□□□□□ -0.19
USP3-207ENST00000558218 MAP2P11137 1827 aaKnown RBP13.87□□□□□ -0.19
USP3-207ENST00000558218 PPM1GO15355 546 aaPredicted RBP13.86□□□□□ -0.19
USP3-207ENST00000558218 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.86□□□□□ -0.191e-7■□□□□ 11.3
USP3-207ENST00000558218 KNSTRNQ9Y448 316 aa13.86□□□□□ -0.19
USP3-207ENST00000558218 RGPD2P0DJD1 1756 aa13.86□□□□□ -0.19
USP3-207ENST00000558218 SLC27A3Q5K4L6 730 aa13.85□□□□□ -0.19
USP3-207ENST00000558218 SPON1Q9HCB6 807 aa13.85□□□□□ -0.19
USP3-207ENST00000558218 STK32BQ9NY57 414 aa13.85□□□□□ -0.19
USP3-207ENST00000558218 PLEKHG2Q9H7P9 1386 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 PRIM1P49642 420 aaKnown RBP13.84□□□□□ -0.19
USP3-207ENST00000558218 SLC15A2Q16348 729 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 PCDH11XQ9BZA7 1347 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 PCDH11YQ9BZA8 1340 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 MEGF6O75095 1541 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 ANKRD26Q9UPS8 1709 aa13.84□□□□□ -0.19
USP3-207ENST00000558218 NCAPD2Q15021 1401 aa13.83□□□□□ -0.2
USP3-207ENST00000558218 SRCAPQ6ZRS2 3230 aa13.83□□□□□ -0.2
USP3-207ENST00000558218 GALR2O43603 387 aaPredicted RBP13.82□□□□□ -0.2
USP3-207ENST00000558218 MORC1Q86VD1 984 aa13.82□□□□□ -0.2
USP3-207ENST00000558218 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
USP3-207ENST00000558218 EYA1Q99502 592 aa13.82□□□□□ -0.2
USP3-207ENST00000558218 SPG7Q9UQ90 795 aa13.82□□□□□ -0.2
USP3-207ENST00000558218 BTAF1O14981 1849 aa13.81□□□□□ -0.2
USP3-207ENST00000558218 NKX1-1Q15270 411 aaPredicted RBP13.81□□□□□ -0.2
USP3-207ENST00000558218 ANO8Q9HCE9 1232 aaPredicted RBP13.81□□□□□ -0.2
USP3-207ENST00000558218 KIF7Q2M1P5 1343 aa13.81□□□□□ -0.2
USP3-207ENST00000558218 SYTL4Q96C24 671 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms