RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.96□□□□□ -0.171e-7■■■□□ 18.9
LRRC28-204ENST00000558172 PKD1L3Q7Z443 1732 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 KAT6BQ8WYB5 2073 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 LRRC37A3O60309 1634 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 HMOX1P09601 288 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 AMOTQ4VCS5 1084 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 OVOS2A0A0G2JMS6 1433 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 RGS12O14924 1447 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 MEGF6O75095 1541 aa13.95□□□□□ -0.18
LRRC28-204ENST00000558172 PDE3BQ13370 1112 aa13.94□□□□□ -0.18
LRRC28-204ENST00000558172 PLEKHO1Q53GL0 409 aaPredicted RBP13.94□□□□□ -0.18
LRRC28-204ENST00000558172 AEBP1Q8IUX7 1158 aa13.94□□□□□ -0.18
LRRC28-204ENST00000558172 ZCRB1Q8TBF4 217 aaKnown RBP13.94□□□□□ -0.18
LRRC28-204ENST00000558172 SPG7Q9UQ90 795 aa13.94□□□□□ -0.18
LRRC28-204ENST00000558172 TNS2Q63HR2 1409 aa13.93□□□□□ -0.18
LRRC28-204ENST00000558172 NEFMP07197 916 aa13.93□□□□□ -0.18
LRRC28-204ENST00000558172 CCDC184Q52MB2 194 aa13.93□□□□□ -0.18
LRRC28-204ENST00000558172 RSPH6AQ9H0K4 717 aa13.93□□□□□ -0.18
LRRC28-204ENST00000558172 SHANK3Q9BYB0 1731 aa13.93□□□□□ -0.18
LRRC28-204ENST00000558172 KRT27Q7Z3Y8 459 aa13.92□□□□□ -0.18
LRRC28-204ENST00000558172 MIER1Q8N108 512 aa13.92□□□□□ -0.18
LRRC28-204ENST00000558172 PNISRQ8TF01 805 aaKnown RBP13.92□□□□□ -0.18
LRRC28-204ENST00000558172 PRKAR2BP31323 418 aa13.91□□□□□ -0.18
LRRC28-204ENST00000558172 PCDH11XQ9BZA7 1347 aa13.9□□□□□ -0.18
LRRC28-204ENST00000558172 PCDH11YQ9BZA8 1340 aa13.9□□□□□ -0.18
LRRC28-204ENST00000558172 ADAMTS8Q9UP79 889 aa13.9□□□□□ -0.18
LRRC28-204ENST00000558172 VIRMAQ69YN4 1812 aaKnown RBP13.9□□□□□ -0.18
LRRC28-204ENST00000558172 IFNL2Q8IZJ0 200 aa13.89□□□□□ -0.19
LRRC28-204ENST00000558172 DDX54Q8TDD1 881 aaKnown RBP13.89□□□□□ -0.19
LRRC28-204ENST00000558172 SBF2Q86WG5 1849 aa13.88□□□□□ -0.19
LRRC28-204ENST00000558172 MARCH10Q8NA82 808 aaPredicted RBP13.88□□□□□ -0.19
LRRC28-204ENST00000558172 GAS2L2Q8NHY3 880 aa13.88□□□□□ -0.19
LRRC28-204ENST00000558172 PLEKHF1Q96S99 279 aa13.88□□□□□ -0.19
LRRC28-204ENST00000558172 DLG5Q8TDM6 1919 aa13.88□□□□□ -0.19
LRRC28-204ENST00000558172 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
LRRC28-204ENST00000558172 HSP90AB1P08238 724 aaKnown RBP13.87□□□□□ -0.19
LRRC28-204ENST00000558172 MTHFSDQ2M296 383 aaKnown RBP13.87□□□□□ -0.19
LRRC28-204ENST00000558172 C1orf141Q5JVX7 400 aa13.87□□□□□ -0.19
LRRC28-204ENST00000558172 FAM196AQ6ZSG2 479 aa13.87□□□□□ -0.19
LRRC28-204ENST00000558172 RUNDC1Q96C34 613 aa13.87□□□□□ -0.19
LRRC28-204ENST00000558172 PHACTR3Q96KR7 559 aa13.87□□□□□ -0.19
LRRC28-204ENST00000558172 CYP27B1O15528 508 aa13.86□□□□□ -0.19
LRRC28-204ENST00000558172 PHKG2P15735 406 aa13.86□□□□□ -0.19
LRRC28-204ENST00000558172 NKX1-1Q15270 411 aaPredicted RBP13.86□□□□□ -0.19
LRRC28-204ENST00000558172 AKAP4Q5JQC9 854 aa13.86□□□□□ -0.19
LRRC28-204ENST00000558172 ZNF530Q6P9A1 599 aaPredicted RBP13.86□□□□□ -0.19
LRRC28-204ENST00000558172 BCL9O00512 1426 aa13.86□□□□□ -0.19
LRRC28-204ENST00000558172 FAM9BQ8IZU0 186 aa13.85□□□□□ -0.19
LRRC28-204ENST00000558172 SCN11AQ9UI33 1791 aa13.85□□□□□ -0.19
LRRC28-204ENST00000558172 ITGB4P16144 1822 aa13.84□□□□□ -0.19
LRRC28-204ENST00000558172 GNAT3A8MTJ3 354 aa13.83□□□□□ -0.2
LRRC28-204ENST00000558172 HTATSF1O43719 755 aaKnown RBP13.83□□□□□ -0.2
LRRC28-204ENST00000558172 NFE2L2Q16236 605 aa13.83□□□□□ -0.2
LRRC28-204ENST00000558172 CCDC146Q8IYE0 955 aa13.83□□□□□ -0.2
LRRC28-204ENST00000558172 DCAF5Q96JK2 942 aa13.83□□□□□ -0.2
LRRC28-204ENST00000558172 DOT1LQ8TEK3 1739 aa13.82□□□□□ -0.2
LRRC28-204ENST00000558172 FAM182BQ5T319 152 aa13.82□□□□□ -0.2
LRRC28-204ENST00000558172 ILDR2Q71H61 639 aa13.82□□□□□ -0.2
LRRC28-204ENST00000558172 MAP3K5Q99683 1374 aa13.82□□□□□ -0.2
LRRC28-204ENST00000558172 ADAMTS7Q9UKP4 1686 aa13.82□□□□□ -0.2
LRRC28-204ENST00000558172 TMPOP42166 694 aaKnown RBP13.81□□□□□ -0.2
LRRC28-204ENST00000558172 RTF1Q92541 710 aaKnown RBP13.81□□□□□ -0.2
LRRC28-204ENST00000558172 NHSQ6T4R5 1651 aa13.81□□□□□ -0.2
LRRC28-204ENST00000558172 ERVV-2B6SEH9 535 aa13.8□□□□□ -0.2
LRRC28-204ENST00000558172 RIPK4P57078 832 aa13.8□□□□□ -0.2
LRRC28-204ENST00000558172 LMOD3Q0VAK6 560 aa13.8□□□□□ -0.2
LRRC28-204ENST00000558172 NCBP3Q53F19 620 aaKnown RBP13.8□□□□□ -0.2
LRRC28-204ENST00000558172 MPRIPQ6WCQ1 1025 aa13.8□□□□□ -0.2
LRRC28-204ENST00000558172 TOGARAM1Q9Y4F4 1720 aa13.8□□□□□ -0.2
LRRC28-204ENST00000558172 APAF1O14727 1248 aa13.79□□□□□ -0.2
LRRC28-204ENST00000558172 RNMTO43148 476 aaKnown RBP13.79□□□□□ -0.2
LRRC28-204ENST00000558172 CCDC125Q86Z20 511 aa13.79□□□□□ -0.2
LRRC28-204ENST00000558172 NGEFQ8N5V2 710 aa13.78□□□□□ -0.2
LRRC28-204ENST00000558172 ACSBG1Q96GR2 724 aa13.78□□□□□ -0.2
LRRC28-204ENST00000558172 BCL11BQ9C0K0 894 aaPredicted RBP13.78□□□□□ -0.2
LRRC28-204ENST00000558172 BTAF1O14981 1849 aa13.78□□□□□ -0.2
LRRC28-204ENST00000558172 KDM6AO15550 1401 aaPredicted RBP13.77□□□□□ -0.21
LRRC28-204ENST00000558172 PRIM1P49642 420 aaKnown RBP13.77□□□□□ -0.21
LRRC28-204ENST00000558172 IL17REQ8NFR9 667 aa13.77□□□□□ -0.21
LRRC28-204ENST00000558172 LGR6Q9HBX8 967 aa13.77□□□□□ -0.21
LRRC28-204ENST00000558172 SIPA1L3O60292 1781 aaPredicted RBP13.76□□□□□ -0.21
LRRC28-204ENST00000558172 TRIM37O94972 964 aa13.76□□□□□ -0.21
LRRC28-204ENST00000558172 CABP4P57796 275 aa13.76□□□□□ -0.21
LRRC28-204ENST00000558172 SF3B2Q13435 895 aaKnown RBP13.76□□□□□ -0.21
LRRC28-204ENST00000558172 NEUROD2Q15784 382 aa13.76□□□□□ -0.21
LRRC28-204ENST00000558172 SYTL4Q96C24 671 aaPredicted RBP13.76□□□□□ -0.21
LRRC28-204ENST00000558172 TMOD3Q9NYL9 352 aa13.76□□□□□ -0.21
LRRC28-204ENST00000558172 TNS1Q9HBL0 1735 aaKnown RBP13.76□□□□□ -0.21
LRRC28-204ENST00000558172 CEMIPQ8WUJ3 1361 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 KCNQ2O43526 872 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 TEFQ10587 303 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 CCDC27Q2M243 656 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 SLC52A2Q9HAB3 445 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 RRP7AQ9Y3A4 280 aaKnown RBP13.75□□□□□ -0.21
LRRC28-204ENST00000558172 EP400Q96L91 3159 aa13.75□□□□□ -0.21
LRRC28-204ENST00000558172 MRC1P22897 1456 aa13.74□□□□□ -0.21
LRRC28-204ENST00000558172 MCM10Q7L590 875 aa13.74□□□□□ -0.21
LRRC28-204ENST00000558172 NFATC2IPQ8NCF5 419 aa13.74□□□□□ -0.21
LRRC28-204ENST00000558172 RGPD3A6NKT7 1758 aaPredicted RBP13.73□□□□□ -0.21
LRRC28-204ENST00000558172 RGPD4Q7Z3J3 1758 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms