RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 IL2RBP14784 551 aa13.99□□□□□ -0.17
NEDD1-211ENST00000557454 RGPD5Q99666 1765 aa13.99□□□□□ -0.17
NEDD1-211ENST00000557454 PIK3C2AO00443 1686 aa13.98□□□□□ -0.17
NEDD1-211ENST00000557454 SYTL4Q96C24 671 aaPredicted RBP13.98□□□□□ -0.17
NEDD1-211ENST00000557454 MPHOSPH9Q99550 1183 aa13.97□□□□□ -0.17
NEDD1-211ENST00000557454 NLRP2Q9NX02 1062 aa13.97□□□□□ -0.17
NEDD1-211ENST00000557454 NSD2O96028 1365 aa13.96□□□□□ -0.17
NEDD1-211ENST00000557454 PPARGC1BQ86YN6 1023 aaKnown RBP13.96□□□□□ -0.17
NEDD1-211ENST00000557454 PRIM1P49642 420 aaKnown RBP13.95□□□□□ -0.18
NEDD1-211ENST00000557454 LY75O60449 1722 aa13.95□□□□□ -0.18
NEDD1-211ENST00000557454 KCPQ6ZWJ8 1503 aa13.95□□□□□ -0.18
NEDD1-211ENST00000557454 KCNH5Q8NCM2 988 aa13.94□□□□□ -0.18
NEDD1-211ENST00000557454 SMC1BQ8NDV3 1235 aa13.94□□□□□ -0.18
NEDD1-211ENST00000557454 DDX54Q8TDD1 881 aaKnown RBP13.94□□□□□ -0.18
NEDD1-211ENST00000557454 ERBB3P21860 1342 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 C10orf71Q711Q0 1435 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 SRPK2P78362 688 aaKnown RBP13.93□□□□□ -0.18
NEDD1-211ENST00000557454 ARHGAP27Q6ZUM4 889 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 NFAT5O94916 1531 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 ANKRD36BQ8N2N9 1353 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 PLEKHG2Q9H7P9 1386 aa13.93□□□□□ -0.18
NEDD1-211ENST00000557454 C9orf131Q5VYM1 1079 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 RRAGCQ9HB90 399 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 CABP2Q9NPB3 220 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 BCS1LQ9Y276 419 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 KDM2AQ9Y2K7 1162 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 PXDNLA1KZ92 1463 aa13.92□□□□□ -0.18
NEDD1-211ENST00000557454 FLAD1Q8NFF5 587 aa13.91□□□□□ -0.18
NEDD1-211ENST00000557454 KDM2BQ8NHM5 1336 aa13.9□□□□□ -0.18
NEDD1-211ENST00000557454 FOXN1O15353 648 aa13.9□□□□□ -0.18
NEDD1-211ENST00000557454 AMIGO3Q86WK7 504 aa13.9□□□□□ -0.18
NEDD1-211ENST00000557454 CABP1Q9NZU7 370 aa13.9□□□□□ -0.18
NEDD1-211ENST00000557454 DOT1LQ8TEK3 1739 aa13.9□□□□□ -0.18
NEDD1-211ENST00000557454 SMIM5Q71RC9 77 aa13.89□□□□□ -0.19
NEDD1-211ENST00000557454 PRDM10Q9NQV6 1147 aa13.89□□□□□ -0.19
NEDD1-211ENST00000557454 USP54Q70EL1 1684 aa13.88□□□□□ -0.19
NEDD1-211ENST00000557454 USP47Q96K76 1375 aa13.88□□□□□ -0.19
NEDD1-211ENST00000557454 PHF14O94880 888 aa13.88□□□□□ -0.19
NEDD1-211ENST00000557454 QRICH2Q9H0J4 1663 aa13.88□□□□□ -0.19
NEDD1-211ENST00000557454 MLLT1Q03111 559 aaPredicted RBP13.87□□□□□ -0.19
NEDD1-211ENST00000557454 DCAF11Q8TEB1 546 aa13.87□□□□□ -0.19
NEDD1-211ENST00000557454 C5P01031 1676 aa13.87□□□□□ -0.19
NEDD1-211ENST00000557454 TTC21BQ7Z4L5 1316 aa13.87□□□□□ -0.19
NEDD1-211ENST00000557454 HOXD11P31277 338 aaPredicted RBP13.86□□□□□ -0.19
NEDD1-211ENST00000557454 ANKRD24Q8TF21 1146 aa13.86□□□□□ -0.19
NEDD1-211ENST00000557454 ABHD8Q96I13 439 aa13.86□□□□□ -0.19
NEDD1-211ENST00000557454 A0A0G2JLW4 131 aa13.85□□□□□ -0.19
NEDD1-211ENST00000557454 TNRC6CQ9HCJ0 1690 aaKnown RBP13.85□□□□□ -0.19
NEDD1-211ENST00000557454 PKD1L3Q7Z443 1732 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 KIAA1551Q9HCM1 1747 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 TOGARAM1Q9Y4F4 1720 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 FCHSD2O94868 740 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 AK7Q96M32 723 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 RNF181Q9P0P0 153 aa13.84□□□□□ -0.19
NEDD1-211ENST00000557454 MKRN1Q9UHC7 482 aaKnown RBP13.84□□□□□ -0.19
NEDD1-211ENST00000557454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.83□□□□□ -0.2
NEDD1-211ENST00000557454 ZBTB22O15209 634 aa13.83□□□□□ -0.2
NEDD1-211ENST00000557454 KIAA1210Q9ULL0 1709 aa13.82□□□□□ -0.2
NEDD1-211ENST00000557454 N4BP2Q86UW6 1770 aaPredicted RBP13.82□□□□□ -0.2
NEDD1-211ENST00000557454 CTCFP49711 727 aaPredicted RBP13.82□□□□□ -0.2
NEDD1-211ENST00000557454 TGFB2P61812 414 aa13.82□□□□□ -0.2
NEDD1-211ENST00000557454 MMP10P09238 476 aa13.81□□□□□ -0.2
NEDD1-211ENST00000557454 DPEP1P16444 411 aa13.81□□□□□ -0.2
NEDD1-211ENST00000557454 PALLDQ8WX93 1383 aa13.81□□□□□ -0.2
NEDD1-211ENST00000557454 C4BP0C0L5 1744 aa13.81□□□□□ -0.2
NEDD1-211ENST00000557454 AIDAQ96BJ3 306 aa13.8□□□□□ -0.2
NEDD1-211ENST00000557454 TTC21AQ8NDW8 1320 aa13.8□□□□□ -0.2
NEDD1-211ENST00000557454 LBX1P52954 281 aa13.79□□□□□ -0.2
NEDD1-211ENST00000557454 NSD3Q9BZ95 1437 aa13.79□□□□□ -0.2
NEDD1-211ENST00000557454 CCDC85CA6NKD9 419 aa13.78□□□□□ -0.2
NEDD1-211ENST00000557454 SSFA2P28290 1259 aa13.78□□□□□ -0.2
NEDD1-211ENST00000557454 RGS19P49795 217 aa13.78□□□□□ -0.2
NEDD1-211ENST00000557454 CENPJQ9HC77 1338 aaPredicted RBP13.78□□□□□ -0.2
NEDD1-211ENST00000557454 TAF1LQ8IZX4 1826 aa13.78□□□□□ -0.2
NEDD1-211ENST00000557454 KIF13BQ9NQT8 1826 aa13.78□□□□□ -0.2
NEDD1-211ENST00000557454 UBR3Q6ZT12 1888 aa13.77□□□□□ -0.21
NEDD1-211ENST00000557454 ZCRB1Q8TBF4 217 aaKnown RBP13.77□□□□□ -0.21
NEDD1-211ENST00000557454 CREBZFQ9NS37 354 aa13.77□□□□□ -0.21
NEDD1-211ENST00000557454 VEGFAP15692 232 aaPredicted RBP13.76□□□□□ -0.21
NEDD1-211ENST00000557454 HMGB2P26583 209 aaKnown RBP13.76□□□□□ -0.21
NEDD1-211ENST00000557454 LTV1Q96GA3 475 aaPredicted RBP13.76□□□□□ -0.21
NEDD1-211ENST00000557454 MEGF6O75095 1541 aa13.75□□□□□ -0.21
NEDD1-211ENST00000557454 CNTNAP1P78357 1384 aa13.75□□□□□ -0.21
NEDD1-211ENST00000557454 DCAF5Q96JK2 942 aa13.75□□□□□ -0.21
NEDD1-211ENST00000557454 STAC3Q96MF2 364 aa13.75□□□□□ -0.21
NEDD1-211ENST00000557454 ZNF692Q9BU19 519 aaPredicted RBP13.75□□□□□ -0.21
NEDD1-211ENST00000557454 KCNA3P22001 575 aa13.74□□□□□ -0.21
NEDD1-211ENST00000557454 LTN1O94822 1766 aa13.73□□□□□ -0.21
NEDD1-211ENST00000557454 HSPA8P11142 646 aaKnown RBP13.73□□□□□ -0.21
NEDD1-211ENST00000557454 BRCA1P38398 1863 aaKnown RBP13.73□□□□□ -0.21
NEDD1-211ENST00000557454 PDE4DIPQ5VU43 2346 aa13.73□□□□□ -0.21
NEDD1-211ENST00000557454 USP31Q70CQ4 1352 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 KTN1Q86UP2 1357 aaKnown RBP13.72□□□□□ -0.21
NEDD1-211ENST00000557454 GLTPD2A6NH11 291 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 GNPATO15228 680 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 RASSF7Q02833 373 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 NBPF1Q3BBV0 1214 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.72□□□□□ -0.21
NEDD1-211ENST00000557454 LINC00116Q8NCU8 138 aa13.72□□□□□ -0.21
NEDD1-211ENST00000557454 CCDC87Q9NVE4 849 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms