RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	GJB2	P29033	226 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	SULT6B1	Q6IMI4	303 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	MRPL50	Q8N5N7	158 aa	Known RBP	5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	RASSF8	Q8NHQ8	419 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	C16orf45	Q96MC5	204 aa	Predicted RBP	5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	FMNL2	Q96PY5	1086 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	NUP160	Q12769	1436 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	MBD5	Q9P267	1494 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005		F6X3S4	739 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	OFD1	O75665	1012 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	PRPF40B	Q6NWY9	871 aa	Known RBP	5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	STAC3	Q96MF2	364 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	CLIP2	Q9UDT6	1046 aa		5.94	□□□□□ -1.46
SYNE2-223	ENST00000557005	LARP1B	Q659C4	914 aa	Known RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	OLFM4	Q6UX06	510 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	CKAP2L	Q8IYA6	745 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	C17orf53	Q8N3J3	647 aa	Predicted RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	TESK2	Q96S53	571 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	SHANK2	Q9UPX8	1470 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	PDE4C	Q08493	712 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	ZFP91	Q96JP5	570 aa	Predicted RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	CEP170	Q5SW79	1584 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	GIMAP6	Q6P9H5	292 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	NFXL1	Q6ZNB6	911 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	UPF3B	Q9BZI7	483 aa	Known RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	TRPM1	Q7Z4N2	1603 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	MYO5C	Q9NQX4	1742 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	PATL2	C9JE40	543 aa	Known RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	MAP3K11	Q16584	847 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	NOM1	Q5C9Z4	860 aa	Known RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	PER1	O15534	1290 aa	Predicted RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	SDS	P20132	328 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	STK11IP	Q8N1F8	1099 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	TMX3	Q96JJ7	454 aa		5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	PCMTD1	Q96MG8	357 aa	Predicted RBP	5.93	□□□□□ -1.46
SYNE2-223	ENST00000557005	ADGRL2	O95490	1459 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	FCHSD2	O94868	740 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	TRIM29	Q14134	588 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	AACS	Q86V21	672 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	TRMT1	Q9NXH9	659 aa	Known RBP	5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	RTEL1-TNFRSF6B	F6WH68	1400 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	TNNT1	P13805	278 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	NOLC1	Q14978	699 aa	Known RBP eCLIP	5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	CARD14	Q9BXL6	1004 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	EMILIN1	Q9Y6C2	1016 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	ABCC2	Q92887	1545 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	FERMT3	Q86UX7	667 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	TXNDC2	Q86VQ3	553 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	CWC15	Q9P013	229 aa	Known RBP	5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	MAGI2	Q86UL8	1455 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	EIF4G3	O43432	1585 aa	Known RBP	5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	GNAI3	P08754	354 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	DDX11	Q96FC9	970 aa		5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	ZNF396	Q96N95	335 aa	Predicted RBP	5.92	□□□□□ -1.46
SYNE2-223	ENST00000557005	MSH6	P52701	1360 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	KIN	O60870	393 aa	Known RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	NEUROD6	Q96NK8	337 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	CLSTN1	O94985	981 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	KRT85	P78386	507 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	CEP135	Q66GS9	1140 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	RIC3	Q7Z5B4	369 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	ZKSCAN5	Q9Y2L8	839 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	CPLX1	O14810	134 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	IGSF3	O75054	1194 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	SERPINC1	P01008	464 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	APP	P05067	770 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	MCM5	P33992	734 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	HSP90AB4P	Q58FF6	505 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	SPG7	Q9UQ90	795 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	ABCC11	Q96J66	1382 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	POLR3G	O15318	223 aa	Predicted RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	HCLS1	P14317	486 aa	Predicted RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	NME9	Q86XW9	330 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	PRDM15	P57071	1507 aa	Predicted RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	TEF	Q10587	303 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	SYNE3	Q6ZMZ3	975 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	CAGE1	Q8TC20	777 aa		5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	NOL10	Q9BSC4	688 aa	Known RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	LRRFIP2	Q9Y608	721 aa	Known RBP	5.91	□□□□□ -1.46
SYNE2-223	ENST00000557005	POLR3A	O14802	1390 aa	Predicted RBP	5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	KDM5D	Q9BY66	1539 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	TPM1	P09493	284 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	CASQ1	P31415	396 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	ME1	P48163	572 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	TAF3	Q5VWG9	929 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	RPAP2	Q8IXW5	612 aa	Predicted RBP	5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	SDF4	Q9BRK5	362 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	TTC12	Q9H892	705 aa	Predicted RBP	5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	DENND4B	O75064	1496 aa	Predicted RBP	5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	ATP10B	O94823	1461 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	DISP1	Q96F81	1524 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	FAM193A	P78312	1265 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	LEKR1	Q6ZMV7	388 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	ZBTB9	Q96C00	473 aa		5.9	□□□□□ -1.46
SYNE2-223	ENST00000557005	CCP110	O43303	1012 aa		5.9	□□□□□ -1.47
SYNE2-223	ENST00000557005	BRPF1	P55201	1214 aa	Predicted RBP	5.9	□□□□□ -1.47
SYNE2-223	ENST00000557005	WASHC4	Q2M389	1173 aa		5.9	□□□□□ -1.47
SYNE2-223	ENST00000557005	WAPL	Q7Z5K2	1190 aa		5.9	□□□□□ -1.47
SYNE2-223	ENST00000557005	FILIP1	Q7Z7B0	1213 aa		5.9	□□□□□ -1.47

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