RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RRP15Q9Y3B9 282 aaKnown RBP16.57■□□□□ 0.24
SHMT2-226ENST00000556825 TNNT1P13805 278 aa16.56■□□□□ 0.24
SHMT2-226ENST00000556825 ATP6V1AP38606 617 aa16.56■□□□□ 0.24
SHMT2-226ENST00000556825 ZSCAN26Q16670 478 aa16.56■□□□□ 0.24
SHMT2-226ENST00000556825 PACS2Q86VP3 889 aa16.56■□□□□ 0.24
SHMT2-226ENST00000556825 ERCC6L2Q5T890 1561 aa16.56■□□□□ 0.24
SHMT2-226ENST00000556825 CWC22Q9HCG8 908 aaKnown RBP16.55■□□□□ 0.24
SHMT2-226ENST00000556825 LRRFIP2Q9Y608 721 aaKnown RBP16.55■□□□□ 0.24
SHMT2-226ENST00000556825 PLEKHG2Q9H7P9 1386 aa16.55■□□□□ 0.24
SHMT2-226ENST00000556825 MAGEA9P43362 315 aa16.55■□□□□ 0.24
SHMT2-226ENST00000556825 CDC42BPAQ5VT25 1732 aa16.55■□□□□ 0.24
SHMT2-226ENST00000556825 CAMSAP2Q08AD1 1489 aa16.54■□□□□ 0.24
SHMT2-226ENST00000556825 TTC36A6NLP5 189 aa16.54■□□□□ 0.24
SHMT2-226ENST00000556825 WDR43Q15061 677 aaKnown RBP eCLIP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 ZNF777Q9ULD5 760 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 CALRP27797 417 aaKnown RBP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 TRDNQ13061 729 aa16.54■□□□□ 0.24
SHMT2-226ENST00000556825 OS9Q13438 667 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 BSDC1Q9NW68 430 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-226ENST00000556825 KDM4AO75164 1064 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 SSR1P43307 286 aaKnown RBP16.53■□□□□ 0.24
SHMT2-226ENST00000556825 TPM4P67936 248 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 MCTP2Q6DN12 878 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 GPS2Q13227 327 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 FBXO18Q8NFZ0 1043 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 FAM212AQ96EL1 285 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 PTPRCP08575 1304 aa16.53■□□□□ 0.24
SHMT2-226ENST00000556825 ABCC10Q5T3U5 1492 aa16.52■□□□□ 0.24
SHMT2-226ENST00000556825 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.24
SHMT2-226ENST00000556825 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.24
SHMT2-226ENST00000556825 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.24
SHMT2-226ENST00000556825 PKP1Q13835 747 aa16.52■□□□□ 0.24
SHMT2-226ENST00000556825 RBM42Q9BTD8 480 aaKnown RBP16.52■□□□□ 0.24
SHMT2-226ENST00000556825 KIF3CO14782 793 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 MAP2K2P36507 400 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 ZKSCAN8Q15776 578 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-226ENST00000556825 RPAINQ86UA6 219 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 GOLGA5Q8TBA6 731 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 GTF3C6Q969F1 213 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 CEP89Q96ST8 783 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 AK9Q5TCS8 1911 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 CCDC196A0A1B0GTZ2 297 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 RABEP1Q15276 862 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 E2F4Q16254 413 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 RNF20Q5VTR2 975 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 KNSTRNQ9Y448 316 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 FHOD1Q9Y613 1164 aa16.51■□□□□ 0.23
SHMT2-226ENST00000556825 ANKRD20A12PQ8NF67 263 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 RALGAPBQ86X10 1494 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 ST20-MTHFSA0A0A6YYL1 179 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 HTATSF1O43719 755 aaKnown RBP16.5■□□□□ 0.23
SHMT2-226ENST00000556825 PLA2G4AP47712 749 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 IQUBQ8NA54 791 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 ZDHHC9Q9Y397 364 aa16.5■□□□□ 0.23
SHMT2-226ENST00000556825 C11orf91Q3C1V1 193 aa16.49■□□□□ 0.23
SHMT2-226ENST00000556825 ERO1AQ96HE7 468 aa16.49■□□□□ 0.23
SHMT2-226ENST00000556825 C16orf45Q96MC5 204 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-226ENST00000556825 CARD11Q9BXL7 1154 aa16.49■□□□□ 0.23
SHMT2-226ENST00000556825 ABCC2Q92887 1545 aa16.49■□□□□ 0.23
SHMT2-226ENST00000556825 SMARCE1Q969G3 411 aa16.49■□□□□ 0.23
SHMT2-226ENST00000556825 PLXNC1O60486 1568 aa16.48■□□□□ 0.23
SHMT2-226ENST00000556825 SETQ01105 290 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-226ENST00000556825 JMYQ8N9B5 988 aa16.48■□□□□ 0.23
SHMT2-226ENST00000556825 RTF1Q92541 710 aaKnown RBP16.48■□□□□ 0.23
SHMT2-226ENST00000556825 ZNF215Q9UL58 517 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-226ENST00000556825 V9GYY5 206 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-226ENST00000556825 ADGBQ8N7X0 1667 aa16.48■□□□□ 0.23
SHMT2-226ENST00000556825 NBPF6Q5VWK0 638 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 NBPF5PQ86XG9 351 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-226ENST00000556825 NBPF4Q96M43 638 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 TERF2IPQ9NYB0 399 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 UHRF1BP1Q6BDS2 1440 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 FAM135AQ9P2D6 1515 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 BIRC2Q13490 618 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 CALR3Q96L12 384 aaKnown RBP16.47■□□□□ 0.23
SHMT2-226ENST00000556825 KANK1Q14678 1352 aa16.47■□□□□ 0.23
SHMT2-226ENST00000556825 KLHL33A6NCF5 533 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 H2AFXP16104 143 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-226ENST00000556825 ELF2Q15723 593 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 PPM1EQ8WY54 764 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 BORCS6Q96GS4 357 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
SHMT2-226ENST00000556825 CROCC2H7BZ55 1655 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 ST5P78524 1137 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 PPP2R5AQ15172 486 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 MMS22LQ6ZRQ5 1243 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 CFAP44Q96MT7 982 aa16.46■□□□□ 0.23
SHMT2-226ENST00000556825 PNMA6AP0CW24 399 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-226ENST00000556825 RLBP1P12271 317 aa16.45■□□□□ 0.22
SHMT2-226ENST00000556825 MAP9Q49MG5 647 aa16.45■□□□□ 0.22
SHMT2-226ENST00000556825 PZPP20742 1482 aa16.45■□□□□ 0.22
SHMT2-226ENST00000556825 YEATS2Q9ULM3 1422 aa16.44■□□□□ 0.22
SHMT2-226ENST00000556825 POLR3GO15318 223 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-226ENST00000556825 HDAC1Q13547 482 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-226ENST00000556825 RGL3Q3MIN7 710 aa16.44■□□□□ 0.22
SHMT2-226ENST00000556825 CEP135Q66GS9 1140 aa16.44■□□□□ 0.22
SHMT2-226ENST00000556825 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.44■□□□□ 0.22
SHMT2-226ENST00000556825 TBC1D22AQ8WUA7 517 aa16.43■□□□□ 0.22
SHMT2-226ENST00000556825 IFT57Q9NWB7 429 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms