RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 FCHSD2O94868 740 aa18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 PNISRQ8TF01 805 aaKnown RBP18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 RGS12O14924 1447 aa18.67■□□□□ 0.58
VIPAS39-208ENST00000556412 RGPD2P0DJD1 1756 aa18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 PDE3BQ13370 1112 aa18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 ZCRB1Q8TBF4 217 aaKnown RBP18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 DDX54Q8TDD1 881 aaKnown RBP18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 OVOS2A0A0G2JMS6 1433 aa18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 RGPD1P0DJD0 1748 aa18.66■□□□□ 0.58
VIPAS39-208ENST00000556412 NEFMP07197 916 aa18.65■□□□□ 0.58
VIPAS39-208ENST00000556412 CCDC146Q8IYE0 955 aa18.65■□□□□ 0.58
VIPAS39-208ENST00000556412 SPG7Q9UQ90 795 aa18.65■□□□□ 0.58
VIPAS39-208ENST00000556412 PLEKHO1Q53GL0 409 aaPredicted RBP18.64■□□□□ 0.57
VIPAS39-208ENST00000556412 MAPK8IP3Q9UPT6 1336 aa18.64■□□□□ 0.57
VIPAS39-208ENST00000556412 PNNQ9H307 717 aaKnown RBP18.63■□□□□ 0.57
VIPAS39-208ENST00000556412 AMOTQ4VCS5 1084 aa18.63■□□□□ 0.57
VIPAS39-208ENST00000556412 PHACTR3Q96KR7 559 aa18.63■□□□□ 0.57
VIPAS39-208ENST00000556412 TNS2Q63HR2 1409 aa18.62■□□□□ 0.57
VIPAS39-208ENST00000556412 FAM182BQ5T319 152 aa18.62■□□□□ 0.57
VIPAS39-208ENST00000556412 ZNF530Q6P9A1 599 aaPredicted RBP18.62■□□□□ 0.57
VIPAS39-208ENST00000556412 KRT27Q7Z3Y8 459 aa18.62■□□□□ 0.57
VIPAS39-208ENST00000556412 PCDH11XQ9BZA7 1347 aa18.61■□□□□ 0.57
VIPAS39-208ENST00000556412 PCDH11YQ9BZA8 1340 aa18.61■□□□□ 0.57
VIPAS39-208ENST00000556412 THSD7AQ9UPZ6 1657 aa18.61■□□□□ 0.57
VIPAS39-208ENST00000556412 MTHFSDQ2M296 383 aaKnown RBP18.6■□□□□ 0.57
VIPAS39-208ENST00000556412 PLEKHF1Q96S99 279 aa18.6■□□□□ 0.57
VIPAS39-208ENST00000556412 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.6■□□□□ 0.572e-6■■■■□ 24.3
VIPAS39-208ENST00000556412 C1orf141Q5JVX7 400 aa18.59■□□□□ 0.57
VIPAS39-208ENST00000556412 MARCH10Q8NA82 808 aaPredicted RBP18.59■□□□□ 0.57
VIPAS39-208ENST00000556412 LRRC37A3O60309 1634 aa18.59■□□□□ 0.57
VIPAS39-208ENST00000556412 SENP3-EIF4A1A0A087X0R7 540 aa18.58■□□□□ 0.57
VIPAS39-208ENST00000556412 CYP27B1O15528 508 aa18.58■□□□□ 0.57
VIPAS39-208ENST00000556412 RUNDC1Q96C34 613 aa18.58■□□□□ 0.57
VIPAS39-208ENST00000556412 GAS2L2Q8NHY3 880 aa18.58■□□□□ 0.56
VIPAS39-208ENST00000556412 PARP4Q9UKK3 1724 aaKnown RBP18.57■□□□□ 0.56
VIPAS39-208ENST00000556412 PHKG2P15735 406 aa18.57■□□□□ 0.56
VIPAS39-208ENST00000556412 IFNL2Q8IZJ0 200 aa18.57■□□□□ 0.56
VIPAS39-208ENST00000556412 RRP7AQ9Y3A4 280 aaKnown RBP18.56■□□□□ 0.56
VIPAS39-208ENST00000556412 PLEKHG2Q9H7P9 1386 aa18.56■□□□□ 0.56
VIPAS39-208ENST00000556412 WNK3Q9BYP7 1800 aa18.56■□□□□ 0.56
VIPAS39-208ENST00000556412 NEUROD2Q15784 382 aa18.56■□□□□ 0.56
VIPAS39-208ENST00000556412 AKAP4Q5JQC9 854 aa18.54■□□□□ 0.56
VIPAS39-208ENST00000556412 APAF1O14727 1248 aa18.53■□□□□ 0.56
VIPAS39-208ENST00000556412 NFE2L2Q16236 605 aa18.53■□□□□ 0.56
VIPAS39-208ENST00000556412 MPRIPQ6WCQ1 1025 aa18.53■□□□□ 0.56
VIPAS39-208ENST00000556412 GNAT3A8MTJ3 354 aa18.52■□□□□ 0.56
VIPAS39-208ENST00000556412 ILDR2Q71H61 639 aa18.52■□□□□ 0.56
VIPAS39-208ENST00000556412 ACSBG1Q96GR2 724 aa18.52■□□□□ 0.56
VIPAS39-208ENST00000556412 MAP3K5Q99683 1374 aa18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 HSP90AB1P08238 724 aaKnown RBP18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 RIPK4P57078 832 aa18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 FAM196AQ6ZSG2 479 aa18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 SYTL4Q96C24 671 aaPredicted RBP18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 TMPOP42166 694 aaKnown RBP18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 RTF1Q92541 710 aaKnown RBP18.51■□□□□ 0.55
VIPAS39-208ENST00000556412 PKD1L3Q7Z443 1732 aa18.5■□□□□ 0.55
VIPAS39-208ENST00000556412 DCAF5Q96JK2 942 aa18.5■□□□□ 0.55
VIPAS39-208ENST00000556412 SALL2Q9Y467 1007 aaPredicted RBP18.5■□□□□ 0.55
VIPAS39-208ENST00000556412 DCTN1Q14203 1278 aa18.49■□□□□ 0.55
VIPAS39-208ENST00000556412 NKX1-1Q15270 411 aaPredicted RBP18.49■□□□□ 0.55
VIPAS39-208ENST00000556412 MCM10Q7L590 875 aa18.49■□□□□ 0.55
VIPAS39-208ENST00000556412 LGR6Q9HBX8 967 aa18.49■□□□□ 0.55
VIPAS39-208ENST00000556412 PRIM1P49642 420 aaKnown RBP18.47■□□□□ 0.55
VIPAS39-208ENST00000556412 KDM6AO15550 1401 aaPredicted RBP18.47■□□□□ 0.55
VIPAS39-208ENST00000556412 RNMTO43148 476 aaKnown RBP18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 KCNQ2O43526 872 aa18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 TRIM37O94972 964 aa18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 CABP4P57796 275 aa18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 LMOD3Q0VAK6 560 aa18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 THUMPD2Q9BTF0 503 aaKnown RBP18.46■□□□□ 0.55
VIPAS39-208ENST00000556412 SHANK3Q9BYB0 1731 aa18.46■□□□□ 0.54
VIPAS39-208ENST00000556412 BRWD3Q6RI45 1802 aa18.45■□□□□ 0.54
VIPAS39-208ENST00000556412 IL17REQ8NFR9 667 aa18.45■□□□□ 0.54
VIPAS39-208ENST00000556412 TMOD3Q9NYL9 352 aa18.44■□□□□ 0.54
VIPAS39-208ENST00000556412 HTATSF1O43719 755 aaKnown RBP18.44■□□□□ 0.54
VIPAS39-208ENST00000556412 TEFQ10587 303 aa18.44■□□□□ 0.54
VIPAS39-208ENST00000556412 PTF1AQ7RTS3 328 aa18.44■□□□□ 0.54
VIPAS39-208ENST00000556412 BCL9O00512 1426 aa18.43■□□□□ 0.54
VIPAS39-208ENST00000556412 ERVV-2B6SEH9 535 aa18.42■□□□□ 0.54
VIPAS39-208ENST00000556412 NFATC2IPQ8NCF5 419 aa18.42■□□□□ 0.54
VIPAS39-208ENST00000556412 TRIM35Q9UPQ4 493 aa18.42■□□□□ 0.54
VIPAS39-208ENST00000556412 SLC52A2Q9HAB3 445 aa18.42■□□□□ 0.54
VIPAS39-208ENST00000556412 BCL11BQ9C0K0 894 aaPredicted RBP18.41■□□□□ 0.54
VIPAS39-208ENST00000556412 HNRNPUQ00839 825 aaKnown RBP eCLIP18.4■□□□□ 0.54
VIPAS39-208ENST00000556412 PIGBQ92521 554 aa18.4■□□□□ 0.54
VIPAS39-208ENST00000556412 SF3B2Q13435 895 aaKnown RBP18.39■□□□□ 0.54
VIPAS39-208ENST00000556412 CEMIPQ8WUJ3 1361 aa18.39■□□□□ 0.53
VIPAS39-208ENST00000556412 LAS1LQ9Y4W2 734 aaKnown RBP18.39■□□□□ 0.53
VIPAS39-208ENST00000556412 APBA3O96018 575 aa18.38■□□□□ 0.53
VIPAS39-208ENST00000556412 WWC1Q8IX03 1113 aa18.37■□□□□ 0.53
VIPAS39-208ENST00000556412 DOT1LQ8TEK3 1739 aa18.37■□□□□ 0.53
VIPAS39-208ENST00000556412 BTBD11A6QL63 1104 aa18.36■□□□□ 0.53
VIPAS39-208ENST00000556412 CCDC27Q2M243 656 aa18.36■□□□□ 0.53
VIPAS39-208ENST00000556412 YTHDC1Q96MU7 727 aaKnown RBP18.36■□□□□ 0.53
VIPAS39-208ENST00000556412 MIS18AQ9NYP9 233 aa18.36■□□□□ 0.53
VIPAS39-208ENST00000556412 TOGARAM1Q9Y4F4 1720 aa18.36■□□□□ 0.53
VIPAS39-208ENST00000556412 SLC39A6Q13433 755 aa18.35■□□□□ 0.53
VIPAS39-208ENST00000556412 TAF7Q15545 349 aaPredicted RBP18.35■□□□□ 0.53
VIPAS39-208ENST00000556412 ASAP1Q9ULH1 1129 aa18.35■□□□□ 0.53
VIPAS39-208ENST00000556412 EP400Q96L91 3159 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms