RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SRCIN1Q9C0H9 1055 aa18.07■□□□□ 0.48
CUX1-215ENST00000556210 ZMYM3Q14202 1370 aa18.07■□□□□ 0.48
CUX1-215ENST00000556210 VPS37CA5D8V6 355 aaPredicted RBP18.07■□□□□ 0.48
CUX1-215ENST00000556210 RABEP1Q15276 862 aa18.07■□□□□ 0.48
CUX1-215ENST00000556210 METP08581 1390 aa18.07■□□□□ 0.48
CUX1-215ENST00000556210 GDPD2Q9HCC8 539 aa18.07■□□□□ 0.48
CUX1-215ENST00000556210 KDM5AP29375 1690 aaKnown RBP18.07■□□□□ 0.48
CUX1-215ENST00000556210 UHRF1BP1LA0JNW5 1464 aa18.06■□□□□ 0.48
CUX1-215ENST00000556210 E9PCH4 1651 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 SBNO2Q9Y2G9 1366 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 BTBD11A6QL63 1104 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 RAPGEF4Q8WZA2 1011 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 HSP90B1P14625 803 aaKnown RBP18.05■□□□□ 0.48
CUX1-215ENST00000556210 UNC13BO14795 1591 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 PROSER2Q86WR7 435 aaPredicted RBP18.05■□□□□ 0.48
CUX1-215ENST00000556210 USP19O94966 1318 aa18.05■□□□□ 0.48
CUX1-215ENST00000556210 KCNA6P17658 529 aa18.04■□□□□ 0.48
CUX1-215ENST00000556210 PLEKHM2Q8IWE5 1019 aa18.04■□□□□ 0.48
CUX1-215ENST00000556210 CHAMP1Q96JM3 812 aa18.04■□□□□ 0.48
CUX1-215ENST00000556210 PUS7Q96PZ0 661 aaKnown RBP18.04■□□□□ 0.48
CUX1-215ENST00000556210 PHAXQ9H814 394 aaKnown RBP18.04■□□□□ 0.48
CUX1-215ENST00000556210 SYNMO15061 1565 aa18.04■□□□□ 0.48
CUX1-215ENST00000556210 NASPP49321 788 aaPredicted RBP18.03■□□□□ 0.48
CUX1-215ENST00000556210 NUCB2P80303 420 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 G3BP1Q13283 466 aaKnown RBP eCLIP18.03■□□□□ 0.48
CUX1-215ENST00000556210 PI4KAP2A4QPH2 592 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 PI4KAP1Q8N8J0 262 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 GPATCH3Q96I76 525 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 TNRQ92752 1358 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 MX1P20591 662 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 GORABQ5T7V8 394 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 TTC22Q5TAA0 569 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 TTC5Q8N0Z6 440 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 CLASRPQ8N2M8 674 aaKnown RBP18.03■□□□□ 0.48
CUX1-215ENST00000556210 PLXNC1O60486 1568 aa18.03■□□□□ 0.48
CUX1-215ENST00000556210 CEP85Q6P2H3 762 aa18.02■□□□□ 0.48
CUX1-215ENST00000556210 SPG7Q9UQ90 795 aa18.02■□□□□ 0.48
CUX1-215ENST00000556210 NEUROD6Q96NK8 337 aa18.02■□□□□ 0.47
CUX1-215ENST00000556210 PHF8Q9UPP1 1060 aa18.02■□□□□ 0.47
CUX1-215ENST00000556210 ZGPATQ8N5A5 531 aaKnown RBP18.01■□□□□ 0.47
CUX1-215ENST00000556210 MADDQ8WXG6 1647 aa18.01■□□□□ 0.47
CUX1-215ENST00000556210 NEXNQ0ZGT2 675 aa18.01■□□□□ 0.47
CUX1-215ENST00000556210 CCDC85AQ96PX6 553 aaPredicted RBP18.01■□□□□ 0.47
CUX1-215ENST00000556210 CD2BP2O95400 341 aaKnown RBP18.01■□□□□ 0.47
CUX1-215ENST00000556210 ANKRD44Q8N8A2 993 aa18.01■□□□□ 0.47
CUX1-215ENST00000556210 FIBPO43427 364 aa18■□□□□ 0.47
CUX1-215ENST00000556210 ARHGAP45Q92619 1136 aa18■□□□□ 0.47
CUX1-215ENST00000556210 BCL11BQ9C0K0 894 aaPredicted RBP18■□□□□ 0.47
CUX1-215ENST00000556210 PPP1R42Q7Z4L9 355 aa18■□□□□ 0.47
CUX1-215ENST00000556210 SIRT2Q8IXJ6 389 aa18■□□□□ 0.47
CUX1-215ENST00000556210 RBM27Q9P2N5 1060 aaKnown RBP18■□□□□ 0.47
CUX1-215ENST00000556210 SYTL4Q96C24 671 aaPredicted RBP17.99■□□□□ 0.47
CUX1-215ENST00000556210 PRR36Q9H6K5 1346 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 PPFIA3O75145 1194 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 KDM4AO75164 1064 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 STK3Q13188 491 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 PLEKHO1Q53GL0 409 aaPredicted RBP17.99■□□□□ 0.47
CUX1-215ENST00000556210 DCTPP1Q9H773 170 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 SLC39A6Q13433 755 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 DRC7Q8IY82 874 aa17.99■□□□□ 0.47
CUX1-215ENST00000556210 CCDC8Q9H0W5 538 aaPredicted RBP17.98■□□□□ 0.47
CUX1-215ENST00000556210 FAM13BQ9NYF5 915 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 CHPF2Q9P2E5 772 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 DNAJC2Q99543 621 aaKnown RBP17.98■□□□□ 0.47
CUX1-215ENST00000556210 MYOM2P54296 1465 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 PDE1AP54750 535 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 ANKLE2Q86XL3 938 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 SMC3Q9UQE7 1217 aa17.98■□□□□ 0.47
CUX1-215ENST00000556210 TAF7LQ5H9L4 462 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 FBXW7Q969H0 707 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 PKNOX2Q96KN3 472 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 MSH6P52701 1360 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 AACSQ86V21 672 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 FSD1Q9BTV5 496 aa17.97■□□□□ 0.47
CUX1-215ENST00000556210 GSPT1P15170 499 aaKnown RBP17.97■□□□□ 0.47
CUX1-215ENST00000556210 CLCN1P35523 988 aa17.96■□□□□ 0.47
CUX1-215ENST00000556210 CHRNA2Q15822 529 aa17.96■□□□□ 0.47
CUX1-215ENST00000556210 PNMA6EA0A0J9YXQ4 647 aa17.96■□□□□ 0.47
CUX1-215ENST00000556210 PHF23Q9BUL5 403 aaPredicted RBP17.96■□□□□ 0.47
CUX1-215ENST00000556210 LGR6Q9HBX8 967 aa17.96■□□□□ 0.47
CUX1-215ENST00000556210 PA2G4Q9UQ80 394 aaKnown RBP17.96■□□□□ 0.47
CUX1-215ENST00000556210 MAP3K4Q9Y6R4 1608 aa17.96■□□□□ 0.47
CUX1-215ENST00000556210 ZKSCAN1P17029 563 aaPredicted RBP17.95■□□□□ 0.46
CUX1-215ENST00000556210 CABLES1Q8TDN4 633 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 TCEANC2Q96MN5 208 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 EFCAB6Q5THR3 1501 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 SYCE3A1L190 88 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 CNTROBQ8N137 903 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 STRN4Q9NRL3 753 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 CHL1O00533 1208 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 FERMT3Q86UX7 667 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 BOLA2Q9H3K6 86 aa17.95■□□□□ 0.46
CUX1-215ENST00000556210 PTCD1O75127 700 aaKnown RBP17.95■□□□□ 0.46
CUX1-215ENST00000556210 DDX58O95786 925 aaKnown RBP17.95■□□□□ 0.46
CUX1-215ENST00000556210 BAG4O95429 457 aaKnown RBP17.94■□□□□ 0.46
CUX1-215ENST00000556210 ATF3P18847 181 aa17.94■□□□□ 0.46
CUX1-215ENST00000556210 FAM177BA6PVY3 158 aa17.94■□□□□ 0.46
CUX1-215ENST00000556210 R3HCC1Q9Y3T6 440 aaKnown RBP17.94■□□□□ 0.46
CUX1-215ENST00000556210 RBM10P98175 930 aaKnown RBP17.94■□□□□ 0.46
CUX1-215ENST00000556210 TET3O43151 1660 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms