RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 CCER1Q8TC90 406 aaPredicted RBP12.98□□□□□ -0.33
VIPAS39-207ENST00000555854 NCAPD2Q15021 1401 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 NSD2O96028 1365 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 INSRP06213 1382 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 FLT4P35916 1363 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 AMPHP49418 695 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 NBPF6Q5VWK0 638 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 ACSBG1Q96GR2 724 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 NBPF4Q96M43 638 aa12.97□□□□□ -0.33
VIPAS39-207ENST00000555854 HSP90AB2PQ58FF8 381 aa12.96□□□□□ -0.33
VIPAS39-207ENST00000555854 USHBP1Q8N6Y0 703 aa12.96□□□□□ -0.33
VIPAS39-207ENST00000555854 EMILIN1Q9Y6C2 1016 aa12.96□□□□□ -0.33
VIPAS39-207ENST00000555854 KIF24Q5T7B8 1368 aa12.95□□□□□ -0.34
VIPAS39-207ENST00000555854 PDGFDQ9GZP0 370 aaPredicted RBP12.95□□□□□ -0.34
VIPAS39-207ENST00000555854 PKD1L3Q7Z443 1732 aa12.94□□□□□ -0.34
VIPAS39-207ENST00000555854 TOGARAM1Q9Y4F4 1720 aa12.94□□□□□ -0.34
VIPAS39-207ENST00000555854 EIF4G2P78344 907 aaKnown RBP eCLIP12.94□□□□□ -0.34
VIPAS39-207ENST00000555854 TXNRD1Q16881 649 aa12.94□□□□□ -0.34
VIPAS39-207ENST00000555854 NBPF14Q5TI25 921 aa12.93□□□□□ -0.34
VIPAS39-207ENST00000555854 SMG6Q86US8 1419 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-207ENST00000555854 UTRNP46939 3433 aa12.92□□□□□ -0.34
VIPAS39-207ENST00000555854 CGNL1Q0VF96 1302 aa12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 LY75O60449 1722 aa12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 MAP2P11137 1827 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 TUBGCP6Q96RT7 1819 aa12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 DDX54Q8TDD1 881 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 POLR3GLQ9BT43 218 aa12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 LRRC4BQ9NT99 713 aa12.91□□□□□ -0.34
VIPAS39-207ENST00000555854 ZNF827Q17R98 1081 aa12.9□□□□□ -0.34
VIPAS39-207ENST00000555854 ZCRB1Q8TBF4 217 aaKnown RBP12.89□□□□□ -0.35
VIPAS39-207ENST00000555854 POLKQ9UBT6 870 aa12.89□□□□□ -0.35
VIPAS39-207ENST00000555854 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
VIPAS39-207ENST00000555854 SLC15A2Q16348 729 aa12.88□□□□□ -0.35
VIPAS39-207ENST00000555854 PANK3Q9H999 370 aa12.88□□□□□ -0.35
VIPAS39-207ENST00000555854 KAT6BQ8WYB5 2073 aa12.88□□□□□ -0.35
VIPAS39-207ENST00000555854 QSER1Q2KHR3 1735 aa12.88□□□□□ -0.35
VIPAS39-207ENST00000555854 CYP27B1O15528 508 aa12.87□□□□□ -0.35
VIPAS39-207ENST00000555854 KIF7Q2M1P5 1343 aa12.87□□□□□ -0.35
VIPAS39-207ENST00000555854 TATP17735 454 aaPredicted RBP12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 PTGER2P43116 358 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 PRIM1P49642 420 aaKnown RBP12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 RAPGEF4Q8WZA2 1011 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 SPON1Q9HCB6 807 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 STK32BQ9NY57 414 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 PCDH11XQ9BZA7 1347 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 PCDH11YQ9BZA8 1340 aa12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 GOLGB1Q14789 3259 aaKnown RBP12.86□□□□□ -0.35
VIPAS39-207ENST00000555854 PPM1GO15355 546 aaPredicted RBP12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 ZBTB7AO95365 584 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 KCNQ4P56696 695 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 EIF4A2Q14240 407 aaKnown RBP12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 EYA1Q99502 592 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 SGIP1Q9BQI5 828 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 ITGB4P16144 1822 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 COL24A1Q17RW2 1714 aa12.85□□□□□ -0.35
VIPAS39-207ENST00000555854 TNNT2P45379 298 aaPredicted RBP12.84□□□□□ -0.35
VIPAS39-207ENST00000555854 SYTL4Q96C24 671 aaPredicted RBP12.84□□□□□ -0.35
VIPAS39-207ENST00000555854 IGSF1Q8N6C5 1336 aa12.84□□□□□ -0.35
VIPAS39-207ENST00000555854 PNPLA7Q6ZV29 1317 aa12.83□□□□□ -0.36
VIPAS39-207ENST00000555854 C5P01031 1676 aa12.83□□□□□ -0.36
VIPAS39-207ENST00000555854 AMER1Q5JTC6 1135 aaPredicted RBP12.82□□□□□ -0.36
VIPAS39-207ENST00000555854 SLC27A3Q5K4L6 730 aa12.82□□□□□ -0.36
VIPAS39-207ENST00000555854 U3KPZ7 1027 aaPredicted RBP12.82□□□□□ -0.36
VIPAS39-207ENST00000555854 TAF1LQ8IZX4 1826 aa12.81□□□□□ -0.36
VIPAS39-207ENST00000555854 KCNA4P22459 653 aa12.81□□□□□ -0.36
VIPAS39-207ENST00000555854 ATF5Q9Y2D1 282 aaPredicted RBP12.81□□□□□ -0.36
VIPAS39-207ENST00000555854 NKX1-1Q15270 411 aaPredicted RBP12.8□□□□□ -0.36
VIPAS39-207ENST00000555854 MTFR1LQ9H019 292 aa12.8□□□□□ -0.36
VIPAS39-207ENST00000555854 PALLDQ8WX93 1383 aa12.8□□□□□ -0.36
VIPAS39-207ENST00000555854 PLEKHG2Q9H7P9 1386 aa12.8□□□□□ -0.36
VIPAS39-207ENST00000555854 CCNL1Q9UK58 526 aaPredicted RBP12.79□□□□□ -0.36
VIPAS39-207ENST00000555854 AEBP1Q8IUX7 1158 aa12.78□□□□□ -0.36
VIPAS39-207ENST00000555854 PPP1R1BQ9UD71 204 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-207ENST00000555854 KDM6AO15550 1401 aaPredicted RBP12.78□□□□□ -0.36
VIPAS39-207ENST00000555854 C4BP0C0L5 1744 aa12.77□□□□□ -0.36
VIPAS39-207ENST00000555854 PER1O15534 1290 aaPredicted RBP12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 PHKG2P15735 406 aa12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 AMIGO3Q86WK7 504 aa12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 PIGBQ92521 554 aa12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 KDRP35968 1356 aa12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 COL3A1P02461 1466 aaPredicted RBP12.77□□□□□ -0.37
VIPAS39-207ENST00000555854 MPRIPQ6WCQ1 1025 aa12.76□□□□□ -0.37
VIPAS39-207ENST00000555854 MORC1Q86VD1 984 aa12.76□□□□□ -0.37
VIPAS39-207ENST00000555854 SPINK5Q9NQ38 1064 aaPredicted RBP12.76□□□□□ -0.37
VIPAS39-207ENST00000555854 SPG7Q9UQ90 795 aa12.76□□□□□ -0.37
VIPAS39-207ENST00000555854 UBR3Q6ZT12 1888 aa12.75□□□□□ -0.37
VIPAS39-207ENST00000555854 MAP3K5Q99683 1374 aa12.75□□□□□ -0.37
VIPAS39-207ENST00000555854 FHDC1Q9C0D6 1143 aaPredicted RBP12.75□□□□□ -0.37
VIPAS39-207ENST00000555854 KNSTRNQ9Y448 316 aa12.75□□□□□ -0.37
VIPAS39-207ENST00000555854 IL13P35225 146 aa12.74□□□□□ -0.37
VIPAS39-207ENST00000555854 COL23A1Q86Y22 540 aaPredicted RBP12.73□□□□□ -0.37
VIPAS39-207ENST00000555854 IFNL2Q8IZJ0 200 aa12.73□□□□□ -0.37
VIPAS39-207ENST00000555854 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
VIPAS39-207ENST00000555854 NPC1L1Q9UHC9 1359 aa12.72□□□□□ -0.37
VIPAS39-207ENST00000555854 ARXQ96QS3 562 aa12.72□□□□□ -0.37
VIPAS39-207ENST00000555854 SYT17Q9BSW7 474 aa12.72□□□□□ -0.37
VIPAS39-207ENST00000555854 ASAP1Q9ULH1 1129 aa12.72□□□□□ -0.37
VIPAS39-207ENST00000555854 COL5A3P25940 1745 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms