RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 PPM1GO15355 546 aaPredicted RBP29.58■■■□□ 2.33
SYNE2-218ENST00000555241 KCNQ2O43526 872 aa29.58■■■□□ 2.33
SYNE2-218ENST00000555241 USHBP1Q8N6Y0 703 aa29.58■■■□□ 2.33
SYNE2-218ENST00000555241 DDX54Q8TDD1 881 aaKnown RBP29.58■■■□□ 2.33
SYNE2-218ENST00000555241 ACSBG1Q96GR2 724 aa29.58■■■□□ 2.33
SYNE2-218ENST00000555241 POLKQ9UBT6 870 aa29.58■■■□□ 2.33
SYNE2-218ENST00000555241 ZCRB1Q8TBF4 217 aaKnown RBP29.57■■■□□ 2.32
SYNE2-218ENST00000555241 RAPGEF4Q8WZA2 1011 aa29.57■■■□□ 2.32
SYNE2-218ENST00000555241 NCAPD2Q15021 1401 aa29.55■■■□□ 2.32
SYNE2-218ENST00000555241 KNSTRNQ9Y448 316 aa29.54■■■□□ 2.32
SYNE2-218ENST00000555241 PKD1L3Q7Z443 1732 aa29.54■■■□□ 2.32
SYNE2-218ENST00000555241 TATP17735 454 aaPredicted RBP29.53■■■□□ 2.32
SYNE2-218ENST00000555241 TNNT2P45379 298 aaPredicted RBP29.53■■■□□ 2.32
SYNE2-218ENST00000555241 PROM2Q8N271 834 aa29.52■■■□□ 2.32
SYNE2-218ENST00000555241 TXNRD1Q16881 649 aa29.5■■■□□ 2.31
SYNE2-218ENST00000555241 MORC1Q86VD1 984 aa29.48■■■□□ 2.31
SYNE2-218ENST00000555241 PCDH11XQ9BZA7 1347 aa29.46■■■□□ 2.31
SYNE2-218ENST00000555241 PCDH11YQ9BZA8 1340 aa29.46■■■□□ 2.31
SYNE2-218ENST00000555241 EYA1Q99502 592 aa29.46■■■□□ 2.31
SYNE2-218ENST00000555241 AMER1Q5JTC6 1135 aaPredicted RBP29.45■■■□□ 2.31
SYNE2-218ENST00000555241 ANO8Q9HCE9 1232 aaPredicted RBP29.45■■■□□ 2.31
SYNE2-218ENST00000555241 LY75O60449 1722 aa29.45■■■□□ 2.3
SYNE2-218ENST00000555241 CASZ1Q86V15 1759 aa29.44■■■□□ 2.3
SYNE2-218ENST00000555241 PAPPAQ13219 1627 aa29.44■■■□□ 2.3
SYNE2-218ENST00000555241 EIF4A2Q14240 407 aaKnown RBP29.43■■■□□ 2.3
SYNE2-218ENST00000555241 PRIM1P49642 420 aaKnown RBP29.42■■■□□ 2.3
SYNE2-218ENST00000555241 SYTL4Q96C24 671 aaPredicted RBP29.42■■■□□ 2.3
SYNE2-218ENST00000555241 ITGB4P16144 1822 aa29.42■■■□□ 2.3
SYNE2-218ENST00000555241 PER1O15534 1290 aaPredicted RBP29.4■■■□□ 2.3
SYNE2-218ENST00000555241 TOGARAM1Q9Y4F4 1720 aa29.4■■■□□ 2.3
SYNE2-218ENST00000555241 STK32BQ9NY57 414 aa29.39■■■□□ 2.3
SYNE2-218ENST00000555241 PLEKHG2Q9H7P9 1386 aa29.39■■■□□ 2.29
SYNE2-218ENST00000555241 CYP27B1O15528 508 aa29.37■■■□□ 2.29
SYNE2-218ENST00000555241 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.37■■■□□ 2.29
SYNE2-218ENST00000555241 SPG7Q9UQ90 795 aa29.37■■■□□ 2.29
SYNE2-218ENST00000555241 IGSF1Q8N6C5 1336 aa29.37■■■□□ 2.29
SYNE2-218ENST00000555241 SLC15A2Q16348 729 aa29.36■■■□□ 2.29
SYNE2-218ENST00000555241 SLC27A3Q5K4L6 730 aa29.34■■■□□ 2.29
SYNE2-218ENST00000555241 QSER1Q2KHR3 1735 aa29.34■■■□□ 2.29
SYNE2-218ENST00000555241 NPC1L1Q9UHC9 1359 aa29.32■■■□□ 2.28
SYNE2-218ENST00000555241 LRRC4BQ9NT99 713 aa29.32■■■□□ 2.28
SYNE2-218ENST00000555241 NKX1-1Q15270 411 aaPredicted RBP29.31■■■□□ 2.28
SYNE2-218ENST00000555241 SPON1Q9HCB6 807 aa29.31■■■□□ 2.28
SYNE2-218ENST00000555241 CC2D1BQ5T0F9 858 aaKnown RBP29.28■■■□□ 2.28
SYNE2-218ENST00000555241 TUBGCP6Q96RT7 1819 aa29.28■■■□□ 2.28
SYNE2-218ENST00000555241 IFNL2Q8IZJ0 200 aa29.27■■■□□ 2.28
SYNE2-218ENST00000555241 TAF1LQ8IZX4 1826 aa29.27■■■□□ 2.28
SYNE2-218ENST00000555241 PDGFDQ9GZP0 370 aaPredicted RBP29.26■■■□□ 2.27
SYNE2-218ENST00000555241 PHKG2P15735 406 aa29.25■■■□□ 2.27
SYNE2-218ENST00000555241 MPRIPQ6WCQ1 1025 aa29.25■■■□□ 2.27
SYNE2-218ENST00000555241 C5P01031 1676 aa29.25■■■□□ 2.27
SYNE2-218ENST00000555241 IL13P35225 146 aa29.24■■■□□ 2.27
SYNE2-218ENST00000555241 MTHFSP49914 203 aa29.24■■■□□ 2.27
SYNE2-218ENST00000555241 ZNF827Q17R98 1081 aa29.24■■■□□ 2.27
SYNE2-218ENST00000555241 CCNL1Q9UK58 526 aaPredicted RBP29.23■■■□□ 2.27
SYNE2-218ENST00000555241 KDRP35968 1356 aa29.23■■■□□ 2.27
SYNE2-218ENST00000555241 AKT1S1Q96B36 256 aa29.22■■■□□ 2.27
SYNE2-218ENST00000555241 PLEKHO1Q53GL0 409 aaPredicted RBP29.21■■■□□ 2.27
SYNE2-218ENST00000555241 ZBTB7AO95365 584 aa29.2■■■□□ 2.26
SYNE2-218ENST00000555241 KCNQ4P56696 695 aa29.2■■■□□ 2.26
SYNE2-218ENST00000555241 AMOTQ4VCS5 1084 aa29.2■■■□□ 2.26
SYNE2-218ENST00000555241 AEBP1Q8IUX7 1158 aa29.2■■■□□ 2.26
SYNE2-218ENST00000555241 PALLDQ8WX93 1383 aa29.2■■■□□ 2.26
SYNE2-218ENST00000555241 SULT6B1Q6IMI4 303 aa29.19■■■□□ 2.26
SYNE2-218ENST00000555241 PIGBQ92521 554 aa29.18■■■□□ 2.26
SYNE2-218ENST00000555241 SMARCC1Q92922 1105 aaPredicted RBP29.18■■■□□ 2.26
SYNE2-218ENST00000555241 PPP1R1BQ9UD71 204 aaPredicted RBP29.18■■■□□ 2.26
SYNE2-218ENST00000555241 HMGB2P26583 209 aaKnown RBP29.17■■■□□ 2.26
SYNE2-218ENST00000555241 MTFR1LQ9H019 292 aa29.17■■■□□ 2.26
SYNE2-218ENST00000555241 HSP90AB1P08238 724 aaKnown RBP29.16■■■□□ 2.26
SYNE2-218ENST00000555241 TMOD3Q9NYL9 352 aa29.16■■■□□ 2.26
SYNE2-218ENST00000555241 VIRMAQ69YN4 1812 aaKnown RBP29.15■■■□□ 2.26
SYNE2-218ENST00000555241 COL24A1Q17RW2 1714 aa29.14■■■□□ 2.26
SYNE2-218ENST00000555241 ZNF530Q6P9A1 599 aaPredicted RBP29.14■■■□□ 2.26
SYNE2-218ENST00000555241 SCN11AQ9UI33 1791 aa29.13■■■□□ 2.25
SYNE2-218ENST00000555241 COL3A1P02461 1466 aaPredicted RBP29.13■■■□□ 2.25
SYNE2-218ENST00000555241 DIAPH1O60610 1272 aaKnown RBP29.13■■■□□ 2.25
SYNE2-218ENST00000555241 PTGER2P43116 358 aa29.13■■■□□ 2.25
SYNE2-218ENST00000555241 CNGB1Q14028 1251 aaPredicted RBP29.13■■■□□ 2.25
SYNE2-218ENST00000555241 DCAF5Q96JK2 942 aa29.13■■■□□ 2.25
SYNE2-218ENST00000555241 TFCP2L1Q9NZI6 479 aa29.13■■■□□ 2.25
SYNE2-218ENST00000555241 ATF5Q9Y2D1 282 aaPredicted RBP29.13■■■□□ 2.25
SYNE2-218ENST00000555241 PNPLA7Q6ZV29 1317 aa29.12■■■□□ 2.25
SYNE2-218ENST00000555241 C4BP0C0L5 1744 aa29.11■■■□□ 2.25
SYNE2-218ENST00000555241 ERVV-2B6SEH9 535 aa29.11■■■□□ 2.25
SYNE2-218ENST00000555241 KDM6AO15550 1401 aaPredicted RBP29.11■■■□□ 2.25
SYNE2-218ENST00000555241 SLC16A10Q8TF71 515 aa29.1■■■□□ 2.25
SYNE2-218ENST00000555241 C1orf141Q5JVX7 400 aa29.09■■■□□ 2.25
SYNE2-218ENST00000555241 SGIP1Q9BQI5 828 aa29.08■■■□□ 2.25
SYNE2-218ENST00000555241 ZNF831Q5JPB2 1677 aa29.08■■■□□ 2.25
SYNE2-218ENST00000555241 UBR3Q6ZT12 1888 aa29.08■■■□□ 2.25
SYNE2-218ENST00000555241 HMOX1P09601 288 aa29.06■■■□□ 2.24
SYNE2-218ENST00000555241 ASAP1Q9ULH1 1129 aa29.06■■■□□ 2.24
SYNE2-218ENST00000555241 LOC102724428A0A0B4J2F2 783 aa29.05■■■□□ 2.24
SYNE2-218ENST00000555241 SIK1P57059 783 aa29.05■■■□□ 2.24
SYNE2-218ENST00000555241 ATG3Q9NT62 314 aa29.04■■■□□ 2.24
SYNE2-218ENST00000555241 CABP4P57796 275 aa29.01■■■□□ 2.23
SYNE2-218ENST00000555241 AKAP4Q5JQC9 854 aa29.01■■■□□ 2.23
SYNE2-218ENST00000555241 COL5A3P25940 1745 aaPredicted RBP29■■■□□ 2.23
SYNE2-218ENST00000555241 ADAMTS7Q9UKP4 1686 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms