RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 ANKRD26Q9UPS8 1709 aa14.82□□□□□ -0.04
SHMT2-215ENST00000554656 AMPHP49418 695 aa14.81□□□□□ -0.04
SHMT2-215ENST00000554656 TMF1P82094 1093 aa14.81□□□□□ -0.04
SHMT2-215ENST00000554656 SLC24A1O60721 1099 aa14.8□□□□□ -0.04
SHMT2-215ENST00000554656 TOGARAM1Q9Y4F4 1720 aa14.8□□□□□ -0.04
SHMT2-215ENST00000554656 NBPF6Q5VWK0 638 aa14.79□□□□□ -0.04
SHMT2-215ENST00000554656 USHBP1Q8N6Y0 703 aa14.79□□□□□ -0.04
SHMT2-215ENST00000554656 NBPF4Q96M43 638 aa14.79□□□□□ -0.04
SHMT2-215ENST00000554656 CARD14Q9BXL6 1004 aa14.79□□□□□ -0.04
SHMT2-215ENST00000554656 PKD1L3Q7Z443 1732 aa14.78□□□□□ -0.04
SHMT2-215ENST00000554656 KCNQ4P56696 695 aa14.78□□□□□ -0.04
SHMT2-215ENST00000554656 AKT1S1Q96B36 256 aa14.78□□□□□ -0.04
SHMT2-215ENST00000554656 MTFR1LQ9H019 292 aa14.78□□□□□ -0.04
SHMT2-215ENST00000554656 NSD3Q9BZ95 1437 aa14.77□□□□□ -0.04
SHMT2-215ENST00000554656 YY1P25490 414 aa14.77□□□□□ -0.05
SHMT2-215ENST00000554656 PRIM1P49642 420 aaKnown RBP14.77□□□□□ -0.05
SHMT2-215ENST00000554656 ZCRB1Q8TBF4 217 aaKnown RBP14.77□□□□□ -0.05
SHMT2-215ENST00000554656 FHDC1Q9C0D6 1143 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-215ENST00000554656 INSRP06213 1382 aa14.76□□□□□ -0.05
SHMT2-215ENST00000554656 MAP2P11137 1827 aaKnown RBP14.76□□□□□ -0.05
SHMT2-215ENST00000554656 ITGB4P16144 1822 aa14.76□□□□□ -0.05
SHMT2-215ENST00000554656 HSP90AB2PQ58FF8 381 aa14.76□□□□□ -0.05
SHMT2-215ENST00000554656 TAF1LQ8IZX4 1826 aa14.76□□□□□ -0.05
SHMT2-215ENST00000554656 NCAPD2Q15021 1401 aa14.75□□□□□ -0.05
SHMT2-215ENST00000554656 FLT4P35916 1363 aa14.75□□□□□ -0.05
SHMT2-215ENST00000554656 C5P01031 1676 aa14.75□□□□□ -0.05
SHMT2-215ENST00000554656 SMG6Q86US8 1419 aaKnown RBP14.75□□□□□ -0.05
SHMT2-215ENST00000554656 PNPLA7Q6ZV29 1317 aa14.74□□□□□ -0.05
SHMT2-215ENST00000554656 SLC27A3Q5K4L6 730 aa14.74□□□□□ -0.05
SHMT2-215ENST00000554656 SYTL4Q96C24 671 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-215ENST00000554656 SYT17Q9BSW7 474 aa14.74□□□□□ -0.05
SHMT2-215ENST00000554656 CHD4Q14839 1912 aa14.74□□□□□ -0.05
SHMT2-215ENST00000554656 KIF24Q5T7B8 1368 aa14.73□□□□□ -0.05
SHMT2-215ENST00000554656 UTRNP46939 3433 aa14.73□□□□□ -0.05
SHMT2-215ENST00000554656 EMILIN1Q9Y6C2 1016 aa14.73□□□□□ -0.05
SHMT2-215ENST00000554656 MAP3K5Q99683 1374 aa14.73□□□□□ -0.05
SHMT2-215ENST00000554656 CDCA8Q53HL2 280 aa14.72□□□□□ -0.05
SHMT2-215ENST00000554656 ARXQ96QS3 562 aa14.72□□□□□ -0.05
SHMT2-215ENST00000554656 CGNL1Q0VF96 1302 aa14.71□□□□□ -0.05
SHMT2-215ENST00000554656 RAPGEF4Q8WZA2 1011 aa14.71□□□□□ -0.05
SHMT2-215ENST00000554656 CYP27B1O15528 508 aa14.69□□□□□ -0.06
SHMT2-215ENST00000554656 TATP17735 454 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-215ENST00000554656 CCNL1Q9UK58 526 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-215ENST00000554656 PCDH11XQ9BZA7 1347 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 PCDH11YQ9BZA8 1340 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 DCAF8L1A6NGE4 600 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 SLC16A10Q8TF71 515 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 TFCP2L1Q9NZI6 479 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 TIMELESSQ9UNS1 1208 aa14.68□□□□□ -0.06
SHMT2-215ENST00000554656 UBR3Q6ZT12 1888 aa14.67□□□□□ -0.06
SHMT2-215ENST00000554656 C4BP0C0L5 1744 aa14.67□□□□□ -0.06
SHMT2-215ENST00000554656 PALLDQ8WX93 1383 aa14.65□□□□□ -0.06
SHMT2-215ENST00000554656 COL23A1Q86Y22 540 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-215ENST00000554656 GOLGB1Q14789 3259 aaKnown RBP14.65□□□□□ -0.06
SHMT2-215ENST00000554656 WASHC2AQ641Q2 1341 aa14.65□□□□□ -0.06
SHMT2-215ENST00000554656 PPM1GO15355 546 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-215ENST00000554656 EYA1Q99502 592 aa14.64□□□□□ -0.07
SHMT2-215ENST00000554656 POLKQ9UBT6 870 aa14.64□□□□□ -0.07
SHMT2-215ENST00000554656 MPRIPQ6WCQ1 1025 aa14.63□□□□□ -0.07
SHMT2-215ENST00000554656 AMIGO3Q86WK7 504 aa14.63□□□□□ -0.07
SHMT2-215ENST00000554656 NLGN2Q8NFZ4 835 aa14.63□□□□□ -0.07
SHMT2-215ENST00000554656 POLD1P28340 1107 aa14.62□□□□□ -0.07
SHMT2-215ENST00000554656 NKX1-1Q15270 411 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-215ENST00000554656 ZNF784Q8NCA9 323 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-215ENST00000554656 POLR3GLQ9BT43 218 aa14.62□□□□□ -0.07
SHMT2-215ENST00000554656 HSPA5P11021 654 aaKnown RBP14.61□□□□□ -0.07
SHMT2-215ENST00000554656 MSL1Q68DK7 614 aa14.61□□□□□ -0.07
SHMT2-215ENST00000554656 KLHL34Q8N239 644 aa14.61□□□□□ -0.07
SHMT2-215ENST00000554656 PIGBQ92521 554 aa14.61□□□□□ -0.07
SHMT2-215ENST00000554656 TNNT2P45379 298 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-215ENST00000554656 EIF4A2Q14240 407 aaKnown RBP14.6□□□□□ -0.07
SHMT2-215ENST00000554656 MSH5O43196 834 aa14.59□□□□□ -0.07
SHMT2-215ENST00000554656 SMIM5Q71RC9 77 aa14.59□□□□□ -0.07
SHMT2-215ENST00000554656 GPR162Q16538 588 aa14.58□□□□□ -0.08
SHMT2-215ENST00000554656 SPG7Q9UQ90 795 aa14.58□□□□□ -0.08
SHMT2-215ENST00000554656 PHKG2P15735 406 aa14.57□□□□□ -0.08
SHMT2-215ENST00000554656 EIF4G2P78344 907 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHMT2-215ENST00000554656 SMARCC1Q92922 1105 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-215ENST00000554656 PANK3Q9H999 370 aa14.57□□□□□ -0.08
SHMT2-215ENST00000554656 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHMT2-215ENST00000554656 ZNF831Q5JPB2 1677 aa14.57□□□□□ -0.08
SHMT2-215ENST00000554656 IGSF1Q8N6C5 1336 aa14.57□□□□□ -0.08
SHMT2-215ENST00000554656 COL5A3P25940 1745 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-215ENST00000554656 YBX3P16989 372 aaKnown RBP eCLIP14.56□□□□□ -0.089e-9■□□□□ 9.1
SHMT2-215ENST00000554656 LINC00116Q8NCU8 138 aa14.56□□□□□ -0.08
SHMT2-215ENST00000554656 ASAP1Q9ULH1 1129 aa14.56□□□□□ -0.08
SHMT2-215ENST00000554656 LOC102724428A0A0B4J2F2 783 aa14.55□□□□□ -0.08
SHMT2-215ENST00000554656 SIK1P57059 783 aa14.55□□□□□ -0.08
SHMT2-215ENST00000554656 ITPK1Q13572 414 aa14.55□□□□□ -0.08
SHMT2-215ENST00000554656 PELP1Q8IZL8 1130 aaKnown RBP14.55□□□□□ -0.08
SHMT2-215ENST00000554656 KDRP35968 1356 aa14.55□□□□□ -0.08
SHMT2-215ENST00000554656 PLEKHG2Q9H7P9 1386 aa14.55□□□□□ -0.08
SHMT2-215ENST00000554656 KDM6AO15550 1401 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-215ENST00000554656 IFNL2Q8IZJ0 200 aa14.54□□□□□ -0.08
SHMT2-215ENST00000554656 AK7Q96M32 723 aa14.54□□□□□ -0.08
SHMT2-215ENST00000554656 TMOD3Q9NYL9 352 aa14.54□□□□□ -0.08
SHMT2-215ENST00000554656 KIAA1551Q9HCM1 1747 aa14.53□□□□□ -0.08
SHMT2-215ENST00000554656 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.53□□□□□ -0.08
SHMT2-215ENST00000554656 PHF14O94880 888 aa14.53□□□□□ -0.08
SHMT2-215ENST00000554656 FLAD1Q8NFF5 587 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms