RNA–Protein interactions for RNA: ENST00000554607.1

FOXA1-204, Transcript of forkhead box A1, humanhuman

TSL 3

Gene FOXA1, Length 789 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-204ENST00000554607 FBLN1P23142 703 aa33.98■■■■□ 3.03
FOXA1-204ENST00000554607 PNPLA7Q6ZV29 1317 aa33.98■■■■□ 3.03
FOXA1-204ENST00000554607 RTL1A6NKG5 1358 aa33.98■■■■□ 3.03
FOXA1-204ENST00000554607 GPR162Q16538 588 aa33.96■■■■□ 3.03
FOXA1-204ENST00000554607 CGNL1Q0VF96 1302 aa33.96■■■■□ 3.03
FOXA1-204ENST00000554607 KCNQ4P56696 695 aa33.93■■■■□ 3.02
FOXA1-204ENST00000554607 KLHL34Q8N239 644 aa33.93■■■■□ 3.02
FOXA1-204ENST00000554607 NSD2O96028 1365 aa33.93■■■■□ 3.02
FOXA1-204ENST00000554607 DOT1LQ8TEK3 1739 aa33.93■■■■□ 3.02
FOXA1-204ENST00000554607 TMF1P82094 1093 aa33.92■■■■□ 3.02
FOXA1-204ENST00000554607 NBPF6Q5VWK0 638 aa33.92■■■■□ 3.02
FOXA1-204ENST00000554607 NBPF4Q96M43 638 aa33.92■■■■□ 3.02
FOXA1-204ENST00000554607 CCNL1Q9UK58 526 aaPredicted RBP33.92■■■■□ 3.02
FOXA1-204ENST00000554607 MEGF6O75095 1541 aa33.92■■■■□ 3.02
FOXA1-204ENST00000554607 FYB1O15117 783 aa33.91■■■■□ 3.02
FOXA1-204ENST00000554607 RRS1Q15050 365 aaKnown RBP33.91■■■■□ 3.02
FOXA1-204ENST00000554607 RAPGEF4Q8WZA2 1011 aa33.91■■■■□ 3.02
FOXA1-204ENST00000554607 RGPD2P0DJD1 1756 aa33.9■■■■□ 3.02
FOXA1-204ENST00000554607 LY75O60449 1722 aa33.9■■■■□ 3.02
FOXA1-204ENST00000554607 SMG6Q86US8 1419 aaKnown RBP33.9■■■■□ 3.02
FOXA1-204ENST00000554607 USP47Q96K76 1375 aa33.89■■■■□ 3.02
FOXA1-204ENST00000554607 GGNBP2Q9H3C7 697 aa33.89■■■■□ 3.02
FOXA1-204ENST00000554607 COL24A1Q17RW2 1714 aa33.89■■■■□ 3.02
FOXA1-204ENST00000554607 HMGB2P26583 209 aaKnown RBP33.88■■■■□ 3.01
FOXA1-204ENST00000554607 SHANK3Q9BYB0 1731 aa33.87■■■■□ 3.01
FOXA1-204ENST00000554607 TATP17735 454 aaPredicted RBP33.86■■■■□ 3.01
FOXA1-204ENST00000554607 TUBGCP6Q96RT7 1819 aa33.84■■■■□ 3.01
FOXA1-204ENST00000554607 CDCA8Q53HL2 280 aa33.84■■■■□ 3.01
FOXA1-204ENST00000554607 USHBP1Q8N6Y0 703 aa33.84■■■■□ 3.01
FOXA1-204ENST00000554607 MSH5O43196 834 aa33.83■■■■□ 3.01
FOXA1-204ENST00000554607 PELP1Q8IZL8 1130 aaKnown RBP33.82■■■■□ 3
FOXA1-204ENST00000554607 INSRP06213 1382 aa33.82■■■■□ 3
FOXA1-204ENST00000554607 PCDH11XQ9BZA7 1347 aa33.8■■■■□ 3
FOXA1-204ENST00000554607 PCDH11YQ9BZA8 1340 aa33.8■■■■□ 3
FOXA1-204ENST00000554607 KIF24Q5T7B8 1368 aa33.8■■■■□ 3
FOXA1-204ENST00000554607 C1QTNF8P60827 252 aa33.79■■■■□ 3
FOXA1-204ENST00000554607 HSP90AB2PQ58FF8 381 aa33.79■■■■□ 3
FOXA1-204ENST00000554607 COL23A1Q86Y22 540 aaPredicted RBP33.79■■■■□ 3
FOXA1-204ENST00000554607 FLT4P35916 1363 aa33.78■■■■□ 3
FOXA1-204ENST00000554607 NLGN2Q8NFZ4 835 aa33.77■■■■□ 3
FOXA1-204ENST00000554607 FLAD1Q8NFF5 587 aa33.75■■■□□ 2.99
FOXA1-204ENST00000554607 GRIN3BO60391 1043 aa33.74■■■□□ 2.99
FOXA1-204ENST00000554607 SENP3-EIF4A1A0A087X0R7 540 aa33.72■■■□□ 2.99
FOXA1-204ENST00000554607 MPRIPQ6WCQ1 1025 aa33.71■■■□□ 2.99
FOXA1-204ENST00000554607 KIF20BQ96Q89 1820 aa33.71■■■□□ 2.99
FOXA1-204ENST00000554607 PALLDQ8WX93 1383 aa33.7■■■□□ 2.98
FOXA1-204ENST00000554607 SMARCC1Q92922 1105 aaPredicted RBP33.69■■■□□ 2.98
FOXA1-204ENST00000554607 CYP27B1O15528 508 aa33.68■■■□□ 2.98
FOXA1-204ENST00000554607 GOLGB1Q14789 3259 aaKnown RBP33.68■■■□□ 2.98
FOXA1-204ENST00000554607 GIGYF1O75420 1035 aaPredicted RBP33.67■■■□□ 2.98
FOXA1-204ENST00000554607 MSL1Q68DK7 614 aa33.67■■■□□ 2.98
FOXA1-204ENST00000554607 C5P01031 1676 aa33.67■■■□□ 2.98
FOXA1-204ENST00000554607 CARD14Q9BXL6 1004 aa33.65■■■□□ 2.98
FOXA1-204ENST00000554607 CD2APQ9Y5K6 639 aa33.65■■■□□ 2.98
FOXA1-204ENST00000554607 YBX3P16989 372 aaKnown RBP eCLIP33.64■■■□□ 2.98
FOXA1-204ENST00000554607 EMILIN1Q9Y6C2 1016 aa33.64■■■□□ 2.98
FOXA1-204ENST00000554607 AK7Q96M32 723 aa33.62■■■□□ 2.97
FOXA1-204ENST00000554607 SPG7Q9UQ90 795 aa33.62■■■□□ 2.97
FOXA1-204ENST00000554607 NSD3Q9BZ95 1437 aa33.62■■■□□ 2.97
FOXA1-204ENST00000554607 NKX1-1Q15270 411 aaPredicted RBP33.61■■■□□ 2.97
FOXA1-204ENST00000554607 TAF1LQ8IZX4 1826 aa33.6■■■□□ 2.97
FOXA1-204ENST00000554607 PPM1GO15355 546 aaPredicted RBP33.6■■■□□ 2.97
FOXA1-204ENST00000554607 PIGBQ92521 554 aa33.58■■■□□ 2.97
FOXA1-204ENST00000554607 WASHC2AQ641Q2 1341 aa33.57■■■□□ 2.97
FOXA1-204ENST00000554607 PKD1L3Q7Z443 1732 aa33.57■■■□□ 2.96
FOXA1-204ENST00000554607 NCAPD2Q15021 1401 aa33.57■■■□□ 2.96
FOXA1-204ENST00000554607 ITGB4P16144 1822 aa33.57■■■□□ 2.96
FOXA1-204ENST00000554607 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.56■■■□□ 2.96
FOXA1-204ENST00000554607 C4BP0C0L5 1744 aa33.56■■■□□ 2.96
FOXA1-204ENST00000554607 TOGARAM1Q9Y4F4 1720 aa33.54■■■□□ 2.96
FOXA1-204ENST00000554607 TRIM26Q12899 539 aaPredicted RBP33.53■■■□□ 2.96
FOXA1-204ENST00000554607 EYA1Q99502 592 aa33.52■■■□□ 2.96
FOXA1-204ENST00000554607 TIMELESSQ9UNS1 1208 aa33.52■■■□□ 2.96
FOXA1-204ENST00000554607 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.51■■■□□ 2.95
FOXA1-204ENST00000554607 LOC102724428A0A0B4J2F2 783 aa33.51■■■□□ 2.95
FOXA1-204ENST00000554607 SIK1P57059 783 aa33.51■■■□□ 2.95
FOXA1-204ENST00000554607 TMOD3Q9NYL9 352 aa33.51■■■□□ 2.95
FOXA1-204ENST00000554607 PHF14O94880 888 aa33.5■■■□□ 2.95
FOXA1-204ENST00000554607 SSFA2P28290 1259 aa33.5■■■□□ 2.95
FOXA1-204ENST00000554607 IFNL2Q8IZJ0 200 aa33.49■■■□□ 2.95
FOXA1-204ENST00000554607 ANKRD26Q9UPS8 1709 aa33.48■■■□□ 2.95
FOXA1-204ENST00000554607 AMIGO3Q86WK7 504 aa33.48■■■□□ 2.95
FOXA1-204ENST00000554607 MAP2P11137 1827 aaKnown RBP33.46■■■□□ 2.95
FOXA1-204ENST00000554607 UBR3Q6ZT12 1888 aa33.46■■■□□ 2.95
FOXA1-204ENST00000554607 POLKQ9UBT6 870 aa33.46■■■□□ 2.95
FOXA1-204ENST00000554607 LINC00116Q8NCU8 138 aa33.45■■■□□ 2.95
FOXA1-204ENST00000554607 PHKG2P15735 406 aa33.44■■■□□ 2.94
FOXA1-204ENST00000554607 ATP10DQ9P241 1426 aa33.44■■■□□ 2.94
FOXA1-204ENST00000554607 ASAP1Q9ULH1 1129 aa33.43■■■□□ 2.94
FOXA1-204ENST00000554607 ATP6V1AP38606 617 aa33.42■■■□□ 2.94
FOXA1-204ENST00000554607 SMIM5Q71RC9 77 aa33.42■■■□□ 2.94
FOXA1-204ENST00000554607 IGSF1Q8N6C5 1336 aa33.42■■■□□ 2.94
FOXA1-204ENST00000554607 GPBP1L1Q9HC44 474 aaPredicted RBP33.41■■■□□ 2.94
FOXA1-204ENST00000554607 PLEKHG2Q9H7P9 1386 aa33.41■■■□□ 2.94
FOXA1-204ENST00000554607 GNPATO15228 680 aa33.4■■■□□ 2.94
FOXA1-204ENST00000554607 ITPK1Q13572 414 aa33.39■■■□□ 2.94
FOXA1-204ENST00000554607 EIF4A2Q14240 407 aaKnown RBP33.38■■■□□ 2.93
FOXA1-204ENST00000554607 ATG3Q9NT62 314 aa33.38■■■□□ 2.93
FOXA1-204ENST00000554607 POLR3GLQ9BT43 218 aa33.36■■■□□ 2.93
FOXA1-204ENST00000554607 TNNT2P45379 298 aaPredicted RBP33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms