RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	ADGRB1	O14514	1584 aa		13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	HAP1	P54257	671 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	XPC	Q01831	940 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	MROH1	Q8NDA8	1641 aa		13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	IQSEC2	Q5JU85	1478 aa		13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	NUCB2	P80303	420 aa		13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.99	□□□□□ -0.17
PTPN21-205	ENST00000554270	MLH3	Q9UHC1	1453 aa		13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	RAB3GAP1	Q15042	981 aa		13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	MTHFSD	Q2M296	383 aa	Known RBP	13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	KIAA1211	Q6ZU35	1233 aa		13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	ABTB2	Q8N961	1025 aa		13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	CCDC9	Q9Y3X0	531 aa	Known RBP	13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	RBM25	P49756	843 aa	Known RBP	13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	NUTM1	Q86Y26	1132 aa		13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	ZNF692	Q9BU19	519 aa	Predicted RBP	13.98	□□□□□ -0.17
PTPN21-205	ENST00000554270	ABCA9	Q8IUA7	1624 aa		13.97	□□□□□ -0.17
PTPN21-205	ENST00000554270	TTC21B	Q7Z4L5	1316 aa		13.97	□□□□□ -0.17
PTPN21-205	ENST00000554270	TTC22	Q5TAA0	569 aa		13.97	□□□□□ -0.17
PTPN21-205	ENST00000554270	CEP85	Q6P2H3	762 aa		13.96	□□□□□ -0.17
PTPN21-205	ENST00000554270	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPN21-205	ENST00000554270	ARAP3	Q8WWN8	1544 aa		13.96	□□□□□ -0.18
PTPN21-205	ENST00000554270	SURF6	O75683	361 aa	Known RBP	13.96	□□□□□ -0.18
PTPN21-205	ENST00000554270	ARHGAP45	Q92619	1136 aa		13.96	□□□□□ -0.18
PTPN21-205	ENST00000554270	VWDE	Q8N2E2	1590 aa		13.96	□□□□□ -0.18
PTPN21-205	ENST00000554270	PRR36	Q9H6K5	1346 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	AMOTL2	Q9Y2J4	779 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	CLCN1	P35523	988 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	DCTPP1	Q9H773	170 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	MSH6	P52701	1360 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	NRXN1	Q9ULB1	1477 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	SNX21	Q969T3	373 aa		13.95	□□□□□ -0.18
PTPN21-205	ENST00000554270	ERC2	O15083	957 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	GNAI2	P04899	355 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	ANKRD44	Q8N8A2	993 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	PTMS	P20962	102 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	LRRFIP2	Q9Y608	721 aa	Known RBP	13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	DEPDC5	O75140	1603 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	FSD2	A1L4K1	749 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	ERBB4	Q15303	1308 aa		13.94	□□□□□ -0.18
PTPN21-205	ENST00000554270	TRH	P20396	242 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	HECW2	Q9P2P5	1572 aa		13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	MAP3K19	Q56UN5	1328 aa		13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	HDGFL1	Q5TGJ6	251 aa		13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	PRIM1	P49642	420 aa	Known RBP	13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	AIMP1	Q12904	312 aa	Known RBP	13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	CAMSAP1	Q5T5Y3	1602 aa		13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	UBTFL1	P0CB47	393 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPN21-205	ENST00000554270	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	ABCC4	O15439	1325 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	NLRP1	Q9C000	1473 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	EYA1	Q99502	592 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	KIF2C	Q99661	725 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	LTK	P29376	864 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	CCDC173	Q0VFZ6	552 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	FLII	Q13045	1269 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	ZSCAN23	Q3MJ62	389 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	LRRCC1	Q9C099	1032 aa		13.92	□□□□□ -0.18
PTPN21-205	ENST00000554270	FRMPD1	Q5SYB0	1578 aa		13.91	□□□□□ -0.18
PTPN21-205	ENST00000554270	USP26	Q9BXU7	913 aa		13.91	□□□□□ -0.18
PTPN21-205	ENST00000554270	FIBP	O43427	364 aa		13.91	□□□□□ -0.18
PTPN21-205	ENST00000554270	ZNF853	P0CG23	659 aa		13.91	□□□□□ -0.18
PTPN21-205	ENST00000554270	PNMA6E	A0A0J9YXQ4	647 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	ZFYVE9	O95405	1425 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	NEXMIF	Q5QGS0	1516 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	LRRC7	Q96NW7	1537 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	CHL1	O00533	1208 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	PDE1A	P54750	535 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	TEF	Q10587	303 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	PHAX	Q9H814	394 aa	Known RBP	13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	PTPRM	P28827	1452 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	SETBP1	Q9Y6X0	1596 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	CCDC30	Q5VVM6	783 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	FAM135B	Q49AJ0	1406 aa		13.9	□□□□□ -0.18
PTPN21-205	ENST00000554270	VPS37C	A5D8V6	355 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	SHPRH	Q149N8	1683 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	KLHL40	Q2TBA0	621 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	KIAA1210	Q9ULL0	1709 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	ZMYM3	Q14202	1370 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	SRGAP3	O43295	1099 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	ZSCAN30	Q86W11	494 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	ZNF830	Q96NB3	372 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	RBSN	Q9H1K0	784 aa		13.89	□□□□□ -0.19
PTPN21-205	ENST00000554270	MX1	P20591	662 aa		13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	CCT4	P50991	539 aa	Known RBP	13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	TMX3	Q96JJ7	454 aa		13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	PNPLA6	Q8IY17	1366 aa		13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	CWC27	Q6UX04	472 aa	Known RBP	13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	EDC4	Q6P2E9	1401 aa	Known RBP	13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	LMTK2	Q8IWU2	1503 aa		13.88	□□□□□ -0.19
PTPN21-205	ENST00000554270	FOSB	P53539	338 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	MPRIP	Q6WCQ1	1025 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	CD163L1	Q9NR16	1453 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	GNAT3	A8MTJ3	354 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	PSME1	Q06323	249 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	GNAI3	P08754	354 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	ESCO1	Q5FWF5	840 aa		13.87	□□□□□ -0.19
PTPN21-205	ENST00000554270	SPG7	Q9UQ90	795 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms