RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 CICQ96RK0 1608 aaPredicted RBP24.52■■□□□ 1.52
NEK9-204ENST00000554258 DDX54Q8TDD1 881 aaKnown RBP24.51■■□□□ 1.51
NEK9-204ENST00000554258 DOT1LQ8TEK3 1739 aa24.51■■□□□ 1.51
NEK9-204ENST00000554258 ERBB3P21860 1342 aa24.51■■□□□ 1.51
NEK9-204ENST00000554258 PRIM1P49642 420 aaKnown RBP24.5■■□□□ 1.51
NEK9-204ENST00000554258 C16orf71Q8IYS4 520 aaPredicted RBP24.5■■□□□ 1.51
NEK9-204ENST00000554258 ANKRD36BQ8N2N9 1353 aa24.48■■□□□ 1.51
NEK9-204ENST00000554258 TTC21BQ7Z4L5 1316 aa24.47■■□□□ 1.51
NEK9-204ENST00000554258 FSTL1Q12841 308 aa24.47■■□□□ 1.51
NEK9-204ENST00000554258 TRIM26Q12899 539 aaPredicted RBP24.47■■□□□ 1.51
NEK9-204ENST00000554258 C5P01031 1676 aa24.46■■□□□ 1.51
NEK9-204ENST00000554258 FLAD1Q8NFF5 587 aa24.45■■□□□ 1.5
NEK9-204ENST00000554258 NSD2O96028 1365 aa24.44■■□□□ 1.5
NEK9-204ENST00000554258 HSPA1AP0DMV8 641 aaKnown RBP24.44■■□□□ 1.5
NEK9-204ENST00000554258 HSPA1BP0DMV9 641 aaKnown RBP24.44■■□□□ 1.5
NEK9-204ENST00000554258 PCDH10Q9P2E7 1040 aa24.44■■□□□ 1.5
NEK9-204ENST00000554258 LTN1O94822 1766 aa24.44■■□□□ 1.5
NEK9-204ENST00000554258 TTC21AQ8NDW8 1320 aa24.42■■□□□ 1.5
NEK9-204ENST00000554258 CENPJQ9HC77 1338 aaPredicted RBP24.42■■□□□ 1.5
NEK9-204ENST00000554258 ANKRD24Q8TF21 1146 aa24.42■■□□□ 1.5
NEK9-204ENST00000554258 USP47Q96K76 1375 aa24.42■■□□□ 1.5
NEK9-204ENST00000554258 USP54Q70EL1 1684 aa24.41■■□□□ 1.5
NEK9-204ENST00000554258 KIAA1210Q9ULL0 1709 aa24.41■■□□□ 1.5
NEK9-204ENST00000554258 ZNF692Q9BU19 519 aaPredicted RBP24.39■■□□□ 1.49
NEK9-204ENST00000554258 TAF1LQ8IZX4 1826 aa24.39■■□□□ 1.49
NEK9-204ENST00000554258 HMGB2P26583 209 aaKnown RBP24.35■■□□□ 1.49
NEK9-204ENST00000554258 ARHGAP27Q6ZUM4 889 aa24.35■■□□□ 1.49
NEK9-204ENST00000554258 BCS1LQ9Y276 419 aa24.33■■□□□ 1.49
NEK9-204ENST00000554258 N4BP2Q86UW6 1770 aaPredicted RBP24.32■■□□□ 1.48
NEK9-204ENST00000554258 FAM208AQ9UK61 1670 aaKnown RBP24.31■■□□□ 1.48
NEK9-204ENST00000554258 NBPF1Q3BBV0 1214 aa24.31■■□□□ 1.48
NEK9-204ENST00000554258 AK7Q96M32 723 aa24.31■■□□□ 1.48
NEK9-204ENST00000554258 PLEKHG2Q9H7P9 1386 aa24.3■■□□□ 1.48
NEK9-204ENST00000554258 UBR3Q6ZT12 1888 aa24.3■■□□□ 1.48
NEK9-204ENST00000554258 C4BP0C0L5 1744 aa24.3■■□□□ 1.48
NEK9-204ENST00000554258 KDM2BQ8NHM5 1336 aa24.3■■□□□ 1.48
NEK9-204ENST00000554258 TOGARAM1Q9Y4F4 1720 aa24.3■■□□□ 1.48
NEK9-204ENST00000554258 PHF14O94880 888 aa24.29■■□□□ 1.48
NEK9-204ENST00000554258 SMC1BQ8NDV3 1235 aa24.29■■□□□ 1.48
NEK9-204ENST00000554258 PXDNLA1KZ92 1463 aa24.29■■□□□ 1.48
NEK9-204ENST00000554258 PKD1L3Q7Z443 1732 aa24.29■■□□□ 1.48
NEK9-204ENST00000554258 KCPQ6ZWJ8 1503 aa24.29■■□□□ 1.48
NEK9-204ENST00000554258 KTN1Q86UP2 1357 aaKnown RBP24.29■■□□□ 1.48
NEK9-204ENST00000554258 KIF13BQ9NQT8 1826 aa24.28■■□□□ 1.48
NEK9-204ENST00000554258 EVC2Q86UK5 1308 aa24.28■■□□□ 1.48
NEK9-204ENST00000554258 TNRC6CQ9HCJ0 1690 aaKnown RBP24.27■■□□□ 1.48
NEK9-204ENST00000554258 KIAA1551Q9HCM1 1747 aa24.27■■□□□ 1.48
NEK9-204ENST00000554258 C9orf131Q5VYM1 1079 aa24.27■■□□□ 1.48
NEK9-204ENST00000554258 ZCRB1Q8TBF4 217 aaKnown RBP24.27■■□□□ 1.48
NEK9-204ENST00000554258 C10orf71Q711Q0 1435 aa24.27■■□□□ 1.48
NEK9-204ENST00000554258 AMIGO3Q86WK7 504 aa24.26■■□□□ 1.47
NEK9-204ENST00000554258 RRAGCQ9HB90 399 aa24.26■■□□□ 1.47
NEK9-204ENST00000554258 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.25■■□□□ 1.47
NEK9-204ENST00000554258 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.25■■□□□ 1.47
NEK9-204ENST00000554258 LTV1Q96GA3 475 aaPredicted RBP24.25■■□□□ 1.47
NEK9-204ENST00000554258 USP31Q70CQ4 1352 aa24.25■■□□□ 1.47
NEK9-204ENST00000554258 NSD3Q9BZ95 1437 aa24.25■■□□□ 1.47
NEK9-204ENST00000554258 MON2Q7Z3U7 1717 aa24.24■■□□□ 1.47
NEK9-204ENST00000554258 PALLDQ8WX93 1383 aa24.24■■□□□ 1.47
NEK9-204ENST00000554258 A0A0G2JLW4 131 aa24.23■■□□□ 1.47
NEK9-204ENST00000554258 SMIM5Q71RC9 77 aa24.23■■□□□ 1.47
NEK9-204ENST00000554258 FCHSD2O94868 740 aa24.22■■□□□ 1.47
NEK9-204ENST00000554258 TGFB2P61812 414 aa24.22■■□□□ 1.47
NEK9-204ENST00000554258 BRCA1P38398 1863 aaKnown RBP24.2■■□□□ 1.46
NEK9-204ENST00000554258 NME9Q86XW9 330 aa24.2■■□□□ 1.46
NEK9-204ENST00000554258 ARFGEF1Q9Y6D6 1849 aa24.19■■□□□ 1.46
NEK9-204ENST00000554258 RGPD2P0DJD1 1756 aa24.19■■□□□ 1.46
NEK9-204ENST00000554258 MMP10P09238 476 aa24.18■■□□□ 1.46
NEK9-204ENST00000554258 SSFA2P28290 1259 aa24.18■■□□□ 1.46
NEK9-204ENST00000554258 FAM161AQ3B820 660 aa24.18■■□□□ 1.46
NEK9-204ENST00000554258 MEGF6O75095 1541 aa24.18■■□□□ 1.46
NEK9-204ENST00000554258 IP6K1Q92551 441 aa24.17■■□□□ 1.46
NEK9-204ENST00000554258 RNF181Q9P0P0 153 aa24.16■■□□□ 1.46
NEK9-204ENST00000554258 DPEP1P16444 411 aa24.14■■□□□ 1.45
NEK9-204ENST00000554258 MPRIPQ6WCQ1 1025 aa24.14■■□□□ 1.45
NEK9-204ENST00000554258 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.45
NEK9-204ENST00000554258 RAB3GAP2Q9H2M9 1393 aa24.14■■□□□ 1.45
NEK9-204ENST00000554258 SBF1O95248 1867 aa24.13■■□□□ 1.45
NEK9-204ENST00000554258 SMARCC1Q92922 1105 aaPredicted RBP24.12■■□□□ 1.45
NEK9-204ENST00000554258 ITGB4P16144 1822 aa24.12■■□□□ 1.45
NEK9-204ENST00000554258 PRDM10Q9NQV6 1147 aa24.11■■□□□ 1.45
NEK9-204ENST00000554258 SBNO2Q9Y2G9 1366 aa24.09■■□□□ 1.45
NEK9-204ENST00000554258 GNPATO15228 680 aa24.08■■□□□ 1.45
NEK9-204ENST00000554258 FOXN1O15353 648 aa24.08■■□□□ 1.45
NEK9-204ENST00000554258 CCDC87Q9NVE4 849 aa24.08■■□□□ 1.45
NEK9-204ENST00000554258 LINC00116Q8NCU8 138 aa24.07■■□□□ 1.44
NEK9-204ENST00000554258 CGNL1Q0VF96 1302 aa24.07■■□□□ 1.44
NEK9-204ENST00000554258 VEGFAP15692 232 aaPredicted RBP24.06■■□□□ 1.44
NEK9-204ENST00000554258 MAP2P11137 1827 aaKnown RBP24.05■■□□□ 1.44
NEK9-204ENST00000554258 DCAF5Q96JK2 942 aa24.05■■□□□ 1.44
NEK9-204ENST00000554258 PIM2Q9P1W9 311 aa24.05■■□□□ 1.44
NEK9-204ENST00000554258 C4AP0C0L4 1744 aa24.04■■□□□ 1.44
NEK9-204ENST00000554258 RAPGEF4Q8WZA2 1011 aa24.04■■□□□ 1.44
NEK9-204ENST00000554258 MKRN1Q9UHC7 482 aaKnown RBP24.04■■□□□ 1.44
NEK9-204ENST00000554258 PCDH11XQ9BZA7 1347 aa24.04■■□□□ 1.44
NEK9-204ENST00000554258 PCDH11YQ9BZA8 1340 aa24.04■■□□□ 1.44
NEK9-204ENST00000554258 DALRD3Q5D0E6 543 aaKnown RBP24.03■■□□□ 1.44
NEK9-204ENST00000554258 NLGN1Q8N2Q7 840 aa24.03■■□□□ 1.44
NEK9-204ENST00000554258 KCNA3P22001 575 aa24.02■■□□□ 1.44
NEK9-204ENST00000554258 HOXC9P31274 260 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms