RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 ZNF827Q17R98 1081 aa12.38□□□□□ -0.43
TDP1-208ENST00000553989 ARXQ96QS3 562 aa12.38□□□□□ -0.43
TDP1-208ENST00000553989 SYT17Q9BSW7 474 aa12.38□□□□□ -0.43
TDP1-208ENST00000553989 FAM208AQ9UK61 1670 aaKnown RBP12.38□□□□□ -0.43
TDP1-208ENST00000553989 MAP3K19Q56UN5 1328 aa12.37□□□□□ -0.43
TDP1-208ENST00000553989 HOXC9P31274 260 aa12.37□□□□□ -0.43
TDP1-208ENST00000553989 U3KPZ7 1027 aaPredicted RBP12.37□□□□□ -0.43
TDP1-208ENST00000553989 PAPPAQ13219 1627 aa12.37□□□□□ -0.43
TDP1-208ENST00000553989 SLC24A1O60721 1099 aa12.36□□□□□ -0.43
TDP1-208ENST00000553989 SLC27A3Q5K4L6 730 aa12.36□□□□□ -0.43
TDP1-208ENST00000553989 LRRC4BQ9NT99 713 aa12.36□□□□□ -0.43
TDP1-208ENST00000553989 FBLN1P23142 703 aa12.35□□□□□ -0.43
TDP1-208ENST00000553989 POLD1P28340 1107 aa12.35□□□□□ -0.43
TDP1-208ENST00000553989 TESK2Q96S53 571 aa12.35□□□□□ -0.43
TDP1-208ENST00000553989 TFCP2L1Q9NZI6 479 aa12.35□□□□□ -0.43
TDP1-208ENST00000553989 SMG6Q86US8 1419 aaKnown RBP12.35□□□□□ -0.43
TDP1-208ENST00000553989 ANKRD36BQ8N2N9 1353 aa12.34□□□□□ -0.43
TDP1-208ENST00000553989 PRIM1P49642 420 aaKnown RBP12.34□□□□□ -0.43
TDP1-208ENST00000553989 RRS1Q15050 365 aaKnown RBP12.34□□□□□ -0.43
TDP1-208ENST00000553989 PELP1Q8IZL8 1130 aaKnown RBP12.34□□□□□ -0.43
TDP1-208ENST00000553989 ZCRB1Q8TBF4 217 aaKnown RBP12.34□□□□□ -0.43
TDP1-208ENST00000553989 SGIP1Q9BQI5 828 aa12.34□□□□□ -0.43
TDP1-208ENST00000553989 DOT1LQ8TEK3 1739 aa12.34□□□□□ -0.43
TDP1-208ENST00000553989 RTL1A6NKG5 1358 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 KCNQ4P56696 695 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 TMF1P82094 1093 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 GPR162Q16538 588 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 ZNF784Q8NCA9 323 aaPredicted RBP12.33□□□□□ -0.44
TDP1-208ENST00000553989 AKT1S1Q96B36 256 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 GGNBP2Q9H3C7 697 aa12.33□□□□□ -0.44
TDP1-208ENST00000553989 MEGF6O75095 1541 aa12.32□□□□□ -0.44
TDP1-208ENST00000553989 USHBP1Q8N6Y0 703 aa12.32□□□□□ -0.44
TDP1-208ENST00000553989 SLC16A10Q8TF71 515 aa12.32□□□□□ -0.44
TDP1-208ENST00000553989 RAPGEF4Q8WZA2 1011 aa12.32□□□□□ -0.44
TDP1-208ENST00000553989 CCNL1Q9UK58 526 aaPredicted RBP12.32□□□□□ -0.44
TDP1-208ENST00000553989 PNPLA7Q6ZV29 1317 aa12.32□□□□□ -0.44
TDP1-208ENST00000553989 USP47Q96K76 1375 aa12.31□□□□□ -0.44
TDP1-208ENST00000553989 MAP3K5Q99683 1374 aa12.3□□□□□ -0.44
TDP1-208ENST00000553989 TATP17735 454 aaPredicted RBP12.3□□□□□ -0.44
TDP1-208ENST00000553989 NBPF6Q5VWK0 638 aa12.3□□□□□ -0.44
TDP1-208ENST00000553989 NBPF4Q96M43 638 aa12.3□□□□□ -0.44
TDP1-208ENST00000553989 RGPD2P0DJD1 1756 aa12.3□□□□□ -0.44
TDP1-208ENST00000553989 FYB1O15117 783 aa12.29□□□□□ -0.44
TDP1-208ENST00000553989 CDCA8Q53HL2 280 aa12.29□□□□□ -0.44
TDP1-208ENST00000553989 CGNL1Q0VF96 1302 aa12.29□□□□□ -0.44
TDP1-208ENST00000553989 NSD2O96028 1365 aa12.29□□□□□ -0.44
TDP1-208ENST00000553989 PCDH11XQ9BZA7 1347 aa12.28□□□□□ -0.44
TDP1-208ENST00000553989 PCDH11YQ9BZA8 1340 aa12.28□□□□□ -0.44
TDP1-208ENST00000553989 QSER1Q2KHR3 1735 aa12.28□□□□□ -0.44
TDP1-208ENST00000553989 SHANK3Q9BYB0 1731 aa12.28□□□□□ -0.44
TDP1-208ENST00000553989 HSP90AB2PQ58FF8 381 aa12.27□□□□□ -0.45
TDP1-208ENST00000553989 FLT4P35916 1363 aa12.27□□□□□ -0.45
TDP1-208ENST00000553989 CHD4Q14839 1912 aa12.27□□□□□ -0.45
TDP1-208ENST00000553989 LY75O60449 1722 aa12.26□□□□□ -0.45
TDP1-208ENST00000553989 KIF20BQ96Q89 1820 aa12.26□□□□□ -0.45
TDP1-208ENST00000553989 TUBGCP6Q96RT7 1819 aa12.26□□□□□ -0.45
TDP1-208ENST00000553989 PPM1GO15355 546 aaPredicted RBP12.26□□□□□ -0.45
TDP1-208ENST00000553989 MSL1Q68DK7 614 aa12.26□□□□□ -0.45
TDP1-208ENST00000553989 INSRP06213 1382 aa12.26□□□□□ -0.45
TDP1-208ENST00000553989 MPRIPQ6WCQ1 1025 aa12.25□□□□□ -0.45
TDP1-208ENST00000553989 NLGN2Q8NFZ4 835 aa12.25□□□□□ -0.45
TDP1-208ENST00000553989 PALLDQ8WX93 1383 aa12.25□□□□□ -0.45
TDP1-208ENST00000553989 NSD3Q9BZ95 1437 aa12.25□□□□□ -0.45
TDP1-208ENST00000553989 SENP3-EIF4A1A0A087X0R7 540 aa12.24□□□□□ -0.45
TDP1-208ENST00000553989 HMGB2P26583 209 aaKnown RBP12.24□□□□□ -0.45
TDP1-208ENST00000553989 COL23A1Q86Y22 540 aaPredicted RBP12.24□□□□□ -0.45
TDP1-208ENST00000553989 KIF24Q5T7B8 1368 aa12.23□□□□□ -0.45
TDP1-208ENST00000553989 POLR3GLQ9BT43 218 aa12.23□□□□□ -0.45
TDP1-208ENST00000553989 EMILIN1Q9Y6C2 1016 aa12.23□□□□□ -0.45
TDP1-208ENST00000553989 GIGYF1O75420 1035 aaPredicted RBP12.22□□□□□ -0.45
TDP1-208ENST00000553989 AK7Q96M32 723 aa12.22□□□□□ -0.45
TDP1-208ENST00000553989 UTRNP46939 3433 aa12.22□□□□□ -0.45
TDP1-208ENST00000553989 C5P01031 1676 aa12.22□□□□□ -0.45
TDP1-208ENST00000553989 CYP27B1O15528 508 aa12.21□□□□□ -0.45
TDP1-208ENST00000553989 PHF14O94880 888 aa12.21□□□□□ -0.45
TDP1-208ENST00000553989 C1QTNF8P60827 252 aa12.21□□□□□ -0.45
TDP1-208ENST00000553989 FLAD1Q8NFF5 587 aa12.21□□□□□ -0.45
TDP1-208ENST00000553989 SMARCC1Q92922 1105 aaPredicted RBP12.21□□□□□ -0.45
TDP1-208ENST00000553989 COL24A1Q17RW2 1714 aa12.2□□□□□ -0.46
TDP1-208ENST00000553989 GRIN3BO60391 1043 aa12.2□□□□□ -0.46
TDP1-208ENST00000553989 CARD14Q9BXL6 1004 aa12.2□□□□□ -0.46
TDP1-208ENST00000553989 SPG7Q9UQ90 795 aa12.2□□□□□ -0.46
TDP1-208ENST00000553989 YBX3P16989 372 aaKnown RBP eCLIP12.19□□□□□ -0.46
TDP1-208ENST00000553989 CCER1Q8TC90 406 aaPredicted RBP12.18□□□□□ -0.46
TDP1-208ENST00000553989 TMOD3Q9NYL9 352 aa12.18□□□□□ -0.46
TDP1-208ENST00000553989 ZNF219Q9P2Y4 722 aaPredicted RBP12.18□□□□□ -0.46
TDP1-208ENST00000553989 C4BP0C0L5 1744 aa12.17□□□□□ -0.46
TDP1-208ENST00000553989 PKD1L3Q7Z443 1732 aa12.17□□□□□ -0.46
TDP1-208ENST00000553989 TOGARAM1Q9Y4F4 1720 aa12.17□□□□□ -0.46
TDP1-208ENST00000553989 TNNT2P45379 298 aaPredicted RBP12.17□□□□□ -0.46
TDP1-208ENST00000553989 PIGBQ92521 554 aa12.17□□□□□ -0.46
TDP1-208ENST00000553989 WASHC2AQ641Q2 1341 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.16□□□□□ -0.46
TDP1-208ENST00000553989 EYA1Q99502 592 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 WWC3Q9ULE0 1092 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 CD2APQ9Y5K6 639 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 ITGB4P16144 1822 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 TAF1LQ8IZX4 1826 aa12.16□□□□□ -0.46
TDP1-208ENST00000553989 LOC102724428A0A0B4J2F2 783 aa12.15□□□□□ -0.46
TDP1-208ENST00000553989 SIK1P57059 783 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms