RNA–Protein interactions for RNA: ENST00000553659.1

ACTN1-209, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 434 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-209ENST00000553659 SHANK3Q9BYB0 1731 aa22.04■■□□□ 1.12
ACTN1-209ENST00000553659 AKT1S1Q96B36 256 aa22.04■■□□□ 1.12
ACTN1-209ENST00000553659 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
ACTN1-209ENST00000553659 PRIM1P49642 420 aaKnown RBP22.03■■□□□ 1.12
ACTN1-209ENST00000553659 LY75O60449 1722 aa22.03■■□□□ 1.12
ACTN1-209ENST00000553659 ZCRB1Q8TBF4 217 aaKnown RBP22.02■■□□□ 1.12
ACTN1-209ENST00000553659 SLC16A10Q8TF71 515 aa22.02■■□□□ 1.12
ACTN1-209ENST00000553659 MAP3K5Q99683 1374 aa22.01■■□□□ 1.11
ACTN1-209ENST00000553659 COL24A1Q17RW2 1714 aa22.01■■□□□ 1.11
ACTN1-209ENST00000553659 EIF4G2P78344 907 aaKnown RBP eCLIP22.01■■□□□ 1.11
ACTN1-209ENST00000553659 SYTL4Q96C24 671 aaPredicted RBP22.01■■□□□ 1.11
ACTN1-209ENST00000553659 TUBGCP6Q96RT7 1819 aa22.01■■□□□ 1.11
ACTN1-209ENST00000553659 FYB1O15117 783 aa22■■□□□ 1.11
ACTN1-209ENST00000553659 MIER1Q8N108 512 aa22■■□□□ 1.11
ACTN1-209ENST00000553659 RTL1A6NKG5 1358 aa21.99■■□□□ 1.11
ACTN1-209ENST00000553659 TMF1P82094 1093 aa21.99■■□□□ 1.11
ACTN1-209ENST00000553659 MEGF6O75095 1541 aa21.98■■□□□ 1.11
ACTN1-209ENST00000553659 RRS1Q15050 365 aaKnown RBP21.98■■□□□ 1.11
ACTN1-209ENST00000553659 KCNQ4P56696 695 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 NBPF6Q5VWK0 638 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 ZNF784Q8NCA9 323 aaPredicted RBP21.97■■□□□ 1.11
ACTN1-209ENST00000553659 NBPF4Q96M43 638 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 GGNBP2Q9H3C7 697 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 TFCP2L1Q9NZI6 479 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 CGNL1Q0VF96 1302 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 PNPLA7Q6ZV29 1317 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 NSD2O96028 1365 aa21.97■■□□□ 1.11
ACTN1-209ENST00000553659 CENPBP07199 599 aaPredicted RBP21.96■■□□□ 1.11
ACTN1-209ENST00000553659 KIF20BQ96Q89 1820 aa21.96■■□□□ 1.11
ACTN1-209ENST00000553659 POLD1P28340 1107 aa21.95■■□□□ 1.1
ACTN1-209ENST00000553659 USP47Q96K76 1375 aa21.94■■□□□ 1.1
ACTN1-209ENST00000553659 SMG6Q86US8 1419 aaKnown RBP21.93■■□□□ 1.1
ACTN1-209ENST00000553659 RAPGEF4Q8WZA2 1011 aa21.93■■□□□ 1.1
ACTN1-209ENST00000553659 CDCA8Q53HL2 280 aa21.92■■□□□ 1.1
ACTN1-209ENST00000553659 USHBP1Q8N6Y0 703 aa21.92■■□□□ 1.1
ACTN1-209ENST00000553659 CCNL1Q9UK58 526 aaPredicted RBP21.92■■□□□ 1.1
ACTN1-209ENST00000553659 INSRP06213 1382 aa21.91■■□□□ 1.1
ACTN1-209ENST00000553659 HSPA5P11021 654 aaKnown RBP21.91■■□□□ 1.1
ACTN1-209ENST00000553659 TATP17735 454 aaPredicted RBP21.91■■□□□ 1.1
ACTN1-209ENST00000553659 GPR162Q16538 588 aa21.91■■□□□ 1.1
ACTN1-209ENST00000553659 HSP90AB2PQ58FF8 381 aa21.91■■□□□ 1.1
ACTN1-209ENST00000553659 KIF24Q5T7B8 1368 aa21.89■■□□□ 1.1
ACTN1-209ENST00000553659 KLHL34Q8N239 644 aa21.89■■□□□ 1.09
ACTN1-209ENST00000553659 FLT4P35916 1363 aa21.88■■□□□ 1.09
ACTN1-209ENST00000553659 TAF1LQ8IZX4 1826 aa21.87■■□□□ 1.09
ACTN1-209ENST00000553659 PCDH11XQ9BZA7 1347 aa21.86■■□□□ 1.09
ACTN1-209ENST00000553659 PCDH11YQ9BZA8 1340 aa21.86■■□□□ 1.09
ACTN1-209ENST00000553659 C5P01031 1676 aa21.86■■□□□ 1.09
ACTN1-209ENST00000553659 ITGB4P16144 1822 aa21.86■■□□□ 1.09
ACTN1-209ENST00000553659 HMGB2P26583 209 aaKnown RBP21.86■■□□□ 1.09
ACTN1-209ENST00000553659 COL23A1Q86Y22 540 aaPredicted RBP21.86■■□□□ 1.09
ACTN1-209ENST00000553659 DDX10Q13206 875 aaKnown RBP21.85■■□□□ 1.09
ACTN1-209ENST00000553659 CARD14Q9BXL6 1004 aa21.85■■□□□ 1.09
ACTN1-209ENST00000553659 UTRNP46939 3433 aa21.84■■□□□ 1.09
ACTN1-209ENST00000553659 MSH5O43196 834 aa21.84■■□□□ 1.09
ACTN1-209ENST00000553659 MAP2P11137 1827 aaKnown RBP21.84■■□□□ 1.09
ACTN1-209ENST00000553659 NLGN2Q8NFZ4 835 aa21.83■■□□□ 1.09
ACTN1-209ENST00000553659 CYP27B1O15528 508 aa21.82■■□□□ 1.08
ACTN1-209ENST00000553659 PELP1Q8IZL8 1130 aaKnown RBP21.82■■□□□ 1.08
ACTN1-209ENST00000553659 PKD1L3Q7Z443 1732 aa21.82■■□□□ 1.08
ACTN1-209ENST00000553659 MPRIPQ6WCQ1 1025 aa21.81■■□□□ 1.08
ACTN1-209ENST00000553659 EMILIN1Q9Y6C2 1016 aa21.81■■□□□ 1.08
ACTN1-209ENST00000553659 TOGARAM1Q9Y4F4 1720 aa21.8■■□□□ 1.08
ACTN1-209ENST00000553659 PALLDQ8WX93 1383 aa21.8■■□□□ 1.08
ACTN1-209ENST00000553659 FLAD1Q8NFF5 587 aa21.8■■□□□ 1.08
ACTN1-209ENST00000553659 NSD3Q9BZ95 1437 aa21.8■■□□□ 1.08
ACTN1-209ENST00000553659 ANP32CO43423 234 aa21.79■■□□□ 1.08
ACTN1-209ENST00000553659 ANKRD26Q9UPS8 1709 aa21.79■■□□□ 1.08
ACTN1-209ENST00000553659 SMARCC1Q92922 1105 aaPredicted RBP21.78■■□□□ 1.08
ACTN1-209ENST00000553659 NCAPD2Q15021 1401 aa21.78■■□□□ 1.08
ACTN1-209ENST00000553659 PPM1GO15355 546 aaPredicted RBP21.77■■□□□ 1.08
ACTN1-209ENST00000553659 C1QTNF8P60827 252 aa21.77■■□□□ 1.08
ACTN1-209ENST00000553659 NKX1-1Q15270 411 aaPredicted RBP21.77■■□□□ 1.08
ACTN1-209ENST00000553659 MSL1Q68DK7 614 aa21.77■■□□□ 1.08
ACTN1-209ENST00000553659 GRIN3BO60391 1043 aa21.76■■□□□ 1.07
ACTN1-209ENST00000553659 C4BP0C0L5 1744 aa21.76■■□□□ 1.07
ACTN1-209ENST00000553659 WASHC2AQ641Q2 1341 aa21.76■■□□□ 1.07
ACTN1-209ENST00000553659 CCER2I3L3R5 266 aa21.75■■□□□ 1.07
ACTN1-209ENST00000553659 SPG7Q9UQ90 795 aa21.75■■□□□ 1.07
ACTN1-209ENST00000553659 UBR3Q6ZT12 1888 aa21.75■■□□□ 1.07
ACTN1-209ENST00000553659 YBX3P16989 372 aaKnown RBP eCLIP21.74■■□□□ 1.07
ACTN1-209ENST00000553659 PIGBQ92521 554 aa21.74■■□□□ 1.07
ACTN1-209ENST00000553659 EYA1Q99502 592 aa21.73■■□□□ 1.07
ACTN1-209ENST00000553659 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.73■■□□□ 1.07
ACTN1-209ENST00000553659 CD2APQ9Y5K6 639 aa21.73■■□□□ 1.07
ACTN1-209ENST00000553659 AK7Q96M32 723 aa21.72■■□□□ 1.07
ACTN1-209ENST00000553659 POLKQ9UBT6 870 aa21.71■■□□□ 1.07
ACTN1-209ENST00000553659 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
ACTN1-209ENST00000553659 GIGYF1O75420 1035 aaPredicted RBP21.69■■□□□ 1.06
ACTN1-209ENST00000553659 AMIGO3Q86WK7 504 aa21.69■■□□□ 1.06
ACTN1-209ENST00000553659 LOC102724428A0A0B4J2F2 783 aa21.68■■□□□ 1.06
ACTN1-209ENST00000553659 SIK1P57059 783 aa21.68■■□□□ 1.06
ACTN1-209ENST00000553659 IFNL2Q8IZJ0 200 aa21.68■■□□□ 1.06
ACTN1-209ENST00000553659 TMOD3Q9NYL9 352 aa21.68■■□□□ 1.06
ACTN1-209ENST00000553659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.67■■□□□ 1.06
ACTN1-209ENST00000553659 PHF14O94880 888 aa21.66■■□□□ 1.06
ACTN1-209ENST00000553659 PHKG2P15735 406 aa21.66■■□□□ 1.06
ACTN1-209ENST00000553659 SSFA2P28290 1259 aa21.66■■□□□ 1.06
ACTN1-209ENST00000553659 SMIM5Q71RC9 77 aa21.65■■□□□ 1.06
ACTN1-209ENST00000553659 LINC00116Q8NCU8 138 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 1063.4 ms