RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CGNL1Q0VF96 1302 aa25.2■■□□□ 1.62
SHMT2-206ENST00000553529 KIF7Q2M1P5 1343 aa25.19■■□□□ 1.62
SHMT2-206ENST00000553529 PLSCR1O15162 318 aa25.19■■□□□ 1.62
SHMT2-206ENST00000553529 TXNRD1Q16881 649 aa25.17■■□□□ 1.62
SHMT2-206ENST00000553529 POLKQ9UBT6 870 aa25.17■■□□□ 1.62
SHMT2-206ENST00000553529 SMG6Q86US8 1419 aaKnown RBP25.16■■□□□ 1.62
SHMT2-206ENST00000553529 KCNQ4P56696 695 aa25.15■■□□□ 1.62
SHMT2-206ENST00000553529 KAT6BQ8WYB5 2073 aa25.14■■□□□ 1.62
SHMT2-206ENST00000553529 ZCRB1Q8TBF4 217 aaKnown RBP25.14■■□□□ 1.62
SHMT2-206ENST00000553529 NSD2O96028 1365 aa25.14■■□□□ 1.61
SHMT2-206ENST00000553529 CASZ1Q86V15 1759 aa25.13■■□□□ 1.61
SHMT2-206ENST00000553529 PAPPAQ13219 1627 aa25.12■■□□□ 1.61
SHMT2-206ENST00000553529 TOGARAM1Q9Y4F4 1720 aa25.12■■□□□ 1.61
SHMT2-206ENST00000553529 SYTL4Q96C24 671 aaPredicted RBP25.12■■□□□ 1.61
SHMT2-206ENST00000553529 PRIM1P49642 420 aaKnown RBP25.11■■□□□ 1.61
SHMT2-206ENST00000553529 NBPF14Q5TI25 921 aa25.11■■□□□ 1.61
SHMT2-206ENST00000553529 KIF24Q5T7B8 1368 aa25.1■■□□□ 1.61
SHMT2-206ENST00000553529 EYA1Q99502 592 aa25.1■■□□□ 1.61
SHMT2-206ENST00000553529 LRRC4BQ9NT99 713 aa25.1■■□□□ 1.61
SHMT2-206ENST00000553529 WASHC2AQ641Q2 1341 aa25.1■■□□□ 1.61
SHMT2-206ENST00000553529 EIF4A2Q14240 407 aaKnown RBP25.09■■□□□ 1.61
SHMT2-206ENST00000553529 NCAPD2Q15021 1401 aa25.09■■□□□ 1.61
SHMT2-206ENST00000553529 PKD1L3Q7Z443 1732 aa25.09■■□□□ 1.61
SHMT2-206ENST00000553529 TATP17735 454 aaPredicted RBP25.08■■□□□ 1.61
SHMT2-206ENST00000553529 RAPGEF4Q8WZA2 1011 aa25.08■■□□□ 1.61
SHMT2-206ENST00000553529 CYP27B1O15528 508 aa25.07■■□□□ 1.6
SHMT2-206ENST00000553529 ZNF827Q17R98 1081 aa25.06■■□□□ 1.6
SHMT2-206ENST00000553529 CNGB1Q14028 1251 aaPredicted RBP25.05■■□□□ 1.6
SHMT2-206ENST00000553529 AMER1Q5JTC6 1135 aaPredicted RBP25.04■■□□□ 1.6
SHMT2-206ENST00000553529 ZBTB7AO95365 584 aa25.03■■□□□ 1.6
SHMT2-206ENST00000553529 MORC1Q86VD1 984 aa25.03■■□□□ 1.6
SHMT2-206ENST00000553529 LY75O60449 1722 aa25.02■■□□□ 1.6
SHMT2-206ENST00000553529 TUBGCP6Q96RT7 1819 aa25.02■■□□□ 1.6
SHMT2-206ENST00000553529 SLC15A2Q16348 729 aa25.01■■□□□ 1.59
SHMT2-206ENST00000553529 STK32BQ9NY57 414 aa25■■□□□ 1.59
SHMT2-206ENST00000553529 KNSTRNQ9Y448 316 aa25■■□□□ 1.59
SHMT2-206ENST00000553529 ITGB4P16144 1822 aa25■■□□□ 1.59
SHMT2-206ENST00000553529 AEBP1Q8IUX7 1158 aa24.99■■□□□ 1.59
SHMT2-206ENST00000553529 PCDH11XQ9BZA7 1347 aa24.99■■□□□ 1.59
SHMT2-206ENST00000553529 PCDH11YQ9BZA8 1340 aa24.99■■□□□ 1.59
SHMT2-206ENST00000553529 PER1O15534 1290 aaPredicted RBP24.98■■□□□ 1.59
SHMT2-206ENST00000553529 CC2D1BQ5T0F9 858 aaKnown RBP24.98■■□□□ 1.59
SHMT2-206ENST00000553529 ATF5Q9Y2D1 282 aaPredicted RBP24.98■■□□□ 1.59
SHMT2-206ENST00000553529 IGSF1Q8N6C5 1336 aa24.95■■□□□ 1.58
SHMT2-206ENST00000553529 MPRIPQ6WCQ1 1025 aa24.95■■□□□ 1.58
SHMT2-206ENST00000553529 AKT1S1Q96B36 256 aa24.93■■□□□ 1.58
SHMT2-206ENST00000553529 SPON1Q9HCB6 807 aa24.93■■□□□ 1.58
SHMT2-206ENST00000553529 PTGER2P43116 358 aa24.92■■□□□ 1.58
SHMT2-206ENST00000553529 SMIM5Q71RC9 77 aa24.9■■□□□ 1.58
SHMT2-206ENST00000553529 CCNL1Q9UK58 526 aaPredicted RBP24.9■■□□□ 1.58
SHMT2-206ENST00000553529 PHKG2P15735 406 aa24.89■■□□□ 1.58
SHMT2-206ENST00000553529 PIGBQ92521 554 aa24.89■■□□□ 1.58
SHMT2-206ENST00000553529 PNPLA7Q6ZV29 1317 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 C5P01031 1676 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 IL13P35225 146 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 MTHFSP49914 203 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 SPG7Q9UQ90 795 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 PALLDQ8WX93 1383 aa24.88■■□□□ 1.57
SHMT2-206ENST00000553529 NKX1-1Q15270 411 aaPredicted RBP24.87■■□□□ 1.57
SHMT2-206ENST00000553529 PPP1R1BQ9UD71 204 aaPredicted RBP24.87■■□□□ 1.57
SHMT2-206ENST00000553529 TAF1LQ8IZX4 1826 aa24.86■■□□□ 1.57
SHMT2-206ENST00000553529 SLC27A3Q5K4L6 730 aa24.86■■□□□ 1.57
SHMT2-206ENST00000553529 AMIGO3Q86WK7 504 aa24.86■■□□□ 1.57
SHMT2-206ENST00000553529 SULT6B1Q6IMI4 303 aa24.85■■□□□ 1.57
SHMT2-206ENST00000553529 SGIP1Q9BQI5 828 aa24.85■■□□□ 1.57
SHMT2-206ENST00000553529 QSER1Q2KHR3 1735 aa24.85■■□□□ 1.57
SHMT2-206ENST00000553529 KDM6AO15550 1401 aaPredicted RBP24.85■■□□□ 1.57
SHMT2-206ENST00000553529 ASAP1Q9ULH1 1129 aa24.83■■□□□ 1.57
SHMT2-206ENST00000553529 HMOX1P09601 288 aa24.82■■□□□ 1.56
SHMT2-206ENST00000553529 IFNL2Q8IZJ0 200 aa24.82■■□□□ 1.56
SHMT2-206ENST00000553529 COL3A1P02461 1466 aaPredicted RBP24.82■■□□□ 1.56
SHMT2-206ENST00000553529 MTFR1LQ9H019 292 aa24.81■■□□□ 1.56
SHMT2-206ENST00000553529 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.81■■□□□ 1.56
SHMT2-206ENST00000553529 TFCP2L1Q9NZI6 479 aa24.81■■□□□ 1.56
SHMT2-206ENST00000553529 ZNF530Q6P9A1 599 aaPredicted RBP24.8■■□□□ 1.56
SHMT2-206ENST00000553529 C4BP0C0L5 1744 aa24.8■■□□□ 1.56
SHMT2-206ENST00000553529 COL23A1Q86Y22 540 aaPredicted RBP24.78■■□□□ 1.56
SHMT2-206ENST00000553529 TMOD3Q9NYL9 352 aa24.78■■□□□ 1.56
SHMT2-206ENST00000553529 KDRP35968 1356 aa24.78■■□□□ 1.56
SHMT2-206ENST00000553529 ITPK1Q13572 414 aa24.77■■□□□ 1.56
SHMT2-206ENST00000553529 FHDC1Q9C0D6 1143 aaPredicted RBP24.77■■□□□ 1.56
SHMT2-206ENST00000553529 ATG3Q9NT62 314 aa24.77■■□□□ 1.56
SHMT2-206ENST00000553529 MSL1Q68DK7 614 aa24.76■■□□□ 1.55
SHMT2-206ENST00000553529 LINC00116Q8NCU8 138 aa24.76■■□□□ 1.55
SHMT2-206ENST00000553529 COL24A1Q17RW2 1714 aa24.75■■□□□ 1.55
SHMT2-206ENST00000553529 PLEKHO1Q53GL0 409 aaPredicted RBP24.75■■□□□ 1.55
SHMT2-206ENST00000553529 SLC4A9Q96Q91 983 aa24.75■■□□□ 1.55
SHMT2-206ENST00000553529 UBR3Q6ZT12 1888 aa24.73■■□□□ 1.55
SHMT2-206ENST00000553529 MSH5O43196 834 aa24.73■■□□□ 1.55
SHMT2-206ENST00000553529 NPC1L1Q9UHC9 1359 aa24.72■■□□□ 1.55
SHMT2-206ENST00000553529 LOC102724428A0A0B4J2F2 783 aa24.72■■□□□ 1.55
SHMT2-206ENST00000553529 SIK1P57059 783 aa24.72■■□□□ 1.55
SHMT2-206ENST00000553529 PHF14O94880 888 aa24.71■■□□□ 1.55
SHMT2-206ENST00000553529 VIRMAQ69YN4 1812 aaKnown RBP24.7■■□□□ 1.55
SHMT2-206ENST00000553529 SCN11AQ9UI33 1791 aa24.7■■□□□ 1.55
SHMT2-206ENST00000553529 DIAPH1O60610 1272 aaKnown RBP24.7■■□□□ 1.54
SHMT2-206ENST00000553529 KLHL34Q8N239 644 aa24.7■■□□□ 1.54
SHMT2-206ENST00000553529 SMARCC1Q92922 1105 aaPredicted RBP24.7■■□□□ 1.54
SHMT2-206ENST00000553529 SYT17Q9BSW7 474 aa24.7■■□□□ 1.54
SHMT2-206ENST00000553529 DCAF5Q96JK2 942 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms