RNA–Protein interactions for RNA: ENST00000550519.5

SMARCC2-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, humanhuman

TSL 3

Gene SMARCC2, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC2-210ENST00000550519 AKT1S1Q96B36 256 aa30.34■■■□□ 2.45
SMARCC2-210ENST00000550519 CDCA8Q53HL2 280 aa30.33■■■□□ 2.45
SMARCC2-210ENST00000550519 SYTL4Q96C24 671 aaPredicted RBP30.32■■■□□ 2.44
SMARCC2-210ENST00000550519 NSD2O96028 1365 aa30.3■■■□□ 2.44
SMARCC2-210ENST00000550519 RGPD2P0DJD1 1756 aa30.3■■■□□ 2.44
SMARCC2-210ENST00000550519 CGNL1Q0VF96 1302 aa30.29■■■□□ 2.44
SMARCC2-210ENST00000550519 ARXQ96QS3 562 aa30.29■■■□□ 2.44
SMARCC2-210ENST00000550519 SHANK3Q9BYB0 1731 aa30.27■■■□□ 2.44
SMARCC2-210ENST00000550519 USHBP1Q8N6Y0 703 aa30.27■■■□□ 2.44
SMARCC2-210ENST00000550519 SLC16A10Q8TF71 515 aa30.27■■■□□ 2.44
SMARCC2-210ENST00000550519 SMG6Q86US8 1419 aaKnown RBP30.27■■■□□ 2.44
SMARCC2-210ENST00000550519 INSRP06213 1382 aa30.27■■■□□ 2.44
SMARCC2-210ENST00000550519 HSP90AB2PQ58FF8 381 aa30.26■■■□□ 2.43
SMARCC2-210ENST00000550519 KIF24Q5T7B8 1368 aa30.26■■■□□ 2.43
SMARCC2-210ENST00000550519 KCNQ4P56696 695 aa30.25■■■□□ 2.43
SMARCC2-210ENST00000550519 RAPGEF4Q8WZA2 1011 aa30.25■■■□□ 2.43
SMARCC2-210ENST00000550519 CARD14Q9BXL6 1004 aa30.25■■■□□ 2.43
SMARCC2-210ENST00000550519 MAP3K5Q99683 1374 aa30.25■■■□□ 2.43
SMARCC2-210ENST00000550519 DOT1LQ8TEK3 1739 aa30.25■■■□□ 2.43
SMARCC2-210ENST00000550519 PNPLA7Q6ZV29 1317 aa30.24■■■□□ 2.43
SMARCC2-210ENST00000550519 TIMELESSQ9UNS1 1208 aa30.24■■■□□ 2.43
SMARCC2-210ENST00000550519 FLT4P35916 1363 aa30.24■■■□□ 2.43
SMARCC2-210ENST00000550519 TFCP2L1Q9NZI6 479 aa30.22■■■□□ 2.43
SMARCC2-210ENST00000550519 TATP17735 454 aaPredicted RBP30.21■■■□□ 2.43
SMARCC2-210ENST00000550519 LY75O60449 1722 aa30.19■■■□□ 2.42
SMARCC2-210ENST00000550519 QSER1Q2KHR3 1735 aa30.19■■■□□ 2.42
SMARCC2-210ENST00000550519 CCNL1Q9UK58 526 aaPredicted RBP30.19■■■□□ 2.42
SMARCC2-210ENST00000550519 KIF20BQ96Q89 1820 aa30.19■■■□□ 2.42
SMARCC2-210ENST00000550519 NSD3Q9BZ95 1437 aa30.18■■■□□ 2.42
SMARCC2-210ENST00000550519 EMILIN1Q9Y6C2 1016 aa30.17■■■□□ 2.42
SMARCC2-210ENST00000550519 PCDH11XQ9BZA7 1347 aa30.17■■■□□ 2.42
SMARCC2-210ENST00000550519 PCDH11YQ9BZA8 1340 aa30.17■■■□□ 2.42
SMARCC2-210ENST00000550519 POLD1P28340 1107 aa30.15■■■□□ 2.42
SMARCC2-210ENST00000550519 UTRNP46939 3433 aa30.14■■■□□ 2.42
SMARCC2-210ENST00000550519 COL24A1Q17RW2 1714 aa30.13■■■□□ 2.41
SMARCC2-210ENST00000550519 CYP27B1O15528 508 aa30.12■■■□□ 2.41
SMARCC2-210ENST00000550519 CLSPNQ9HAW4 1339 aa30.12■■■□□ 2.41
SMARCC2-210ENST00000550519 TUBGCP6Q96RT7 1819 aa30.11■■■□□ 2.41
SMARCC2-210ENST00000550519 NCAPD2Q15021 1401 aa30.1■■■□□ 2.41
SMARCC2-210ENST00000550519 ZNF784Q8NCA9 323 aaPredicted RBP30.09■■■□□ 2.41
SMARCC2-210ENST00000550519 WASHC2AQ641Q2 1341 aa30.08■■■□□ 2.41
SMARCC2-210ENST00000550519 COL23A1Q86Y22 540 aaPredicted RBP30.08■■■□□ 2.41
SMARCC2-210ENST00000550519 PPM1GO15355 546 aaPredicted RBP30.06■■■□□ 2.4
SMARCC2-210ENST00000550519 MPRIPQ6WCQ1 1025 aa30.06■■■□□ 2.4
SMARCC2-210ENST00000550519 PALLDQ8WX93 1383 aa30.05■■■□□ 2.4
SMARCC2-210ENST00000550519 KLHL34Q8N239 644 aa30.05■■■□□ 2.4
SMARCC2-210ENST00000550519 HMGB2P26583 209 aaKnown RBP30.04■■■□□ 2.4
SMARCC2-210ENST00000550519 GPR162Q16538 588 aa30.04■■■□□ 2.4
SMARCC2-210ENST00000550519 MSH5O43196 834 aa30.03■■■□□ 2.4
SMARCC2-210ENST00000550519 NKX1-1Q15270 411 aaPredicted RBP30.03■■■□□ 2.4
SMARCC2-210ENST00000550519 ANKRD26Q9UPS8 1709 aa30.02■■■□□ 2.4
SMARCC2-210ENST00000550519 EYA1Q99502 592 aa30.02■■■□□ 2.4
SMARCC2-210ENST00000550519 POLKQ9UBT6 870 aa30.02■■■□□ 2.4
SMARCC2-210ENST00000550519 PKD1L3Q7Z443 1732 aa30.02■■■□□ 2.4
SMARCC2-210ENST00000550519 PCGF6Q9BYE7 350 aa30.01■■■□□ 2.39
SMARCC2-210ENST00000550519 SPG7Q9UQ90 795 aa30.01■■■□□ 2.39
SMARCC2-210ENST00000550519 NLGN2Q8NFZ4 835 aa30■■■□□ 2.39
SMARCC2-210ENST00000550519 SMARCC1Q92922 1105 aaPredicted RBP30■■■□□ 2.39
SMARCC2-210ENST00000550519 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30■■■□□ 2.391e-6■■■□□ 17.4
SMARCC2-210ENST00000550519 PIGBQ92521 554 aa29.99■■■□□ 2.39
SMARCC2-210ENST00000550519 TOGARAM1Q9Y4F4 1720 aa29.99■■■□□ 2.39
SMARCC2-210ENST00000550519 CHD4Q14839 1912 aa29.98■■■□□ 2.39
SMARCC2-210ENST00000550519 FLAD1Q8NFF5 587 aa29.98■■■□□ 2.39
SMARCC2-210ENST00000550519 C5P01031 1676 aa29.98■■■□□ 2.39
SMARCC2-210ENST00000550519 POLR3GLQ9BT43 218 aa29.96■■■□□ 2.39
SMARCC2-210ENST00000550519 MSL1Q68DK7 614 aa29.95■■■□□ 2.39
SMARCC2-210ENST00000550519 MAP2P11137 1827 aaKnown RBP29.94■■■□□ 2.38
SMARCC2-210ENST00000550519 ITGB4P16144 1822 aa29.94■■■□□ 2.38
SMARCC2-210ENST00000550519 PELP1Q8IZL8 1130 aaKnown RBP29.93■■■□□ 2.38
SMARCC2-210ENST00000550519 TAF1LQ8IZX4 1826 aa29.92■■■□□ 2.38
SMARCC2-210ENST00000550519 EIF4A2Q14240 407 aaKnown RBP29.92■■■□□ 2.38
SMARCC2-210ENST00000550519 PHKG2P15735 406 aa29.91■■■□□ 2.38
SMARCC2-210ENST00000550519 EIF4G2P78344 907 aaKnown RBP eCLIP29.91■■■□□ 2.38
SMARCC2-210ENST00000550519 AMIGO3Q86WK7 504 aa29.91■■■□□ 2.38
SMARCC2-210ENST00000550519 IFNL2Q8IZJ0 200 aa29.91■■■□□ 2.38
SMARCC2-210ENST00000550519 TNNT2P45379 298 aaPredicted RBP29.9■■■□□ 2.38
SMARCC2-210ENST00000550519 AK7Q96M32 723 aa29.9■■■□□ 2.38
SMARCC2-210ENST00000550519 C4BP0C0L5 1744 aa29.9■■■□□ 2.38
SMARCC2-210ENST00000550519 GOLGB1Q14789 3259 aaKnown RBP29.9■■■□□ 2.38
SMARCC2-210ENST00000550519 LOC102724428A0A0B4J2F2 783 aa29.89■■■□□ 2.38
SMARCC2-210ENST00000550519 HSPA5P11021 654 aaKnown RBP29.89■■■□□ 2.38
SMARCC2-210ENST00000550519 SIK1P57059 783 aa29.89■■■□□ 2.38
SMARCC2-210ENST00000550519 TMOD3Q9NYL9 352 aa29.89■■■□□ 2.38
SMARCC2-210ENST00000550519 PLEKHG2Q9H7P9 1386 aa29.89■■■□□ 2.37
SMARCC2-210ENST00000550519 YBX3P16989 372 aaKnown RBP eCLIP29.87■■■□□ 2.377e-7■□□□□ 11
SMARCC2-210ENST00000550519 PANK3Q9H999 370 aa29.87■■■□□ 2.37
SMARCC2-210ENST00000550519 CD2APQ9Y5K6 639 aa29.87■■■□□ 2.37
SMARCC2-210ENST00000550519 ASAP1Q9ULH1 1129 aa29.86■■■□□ 2.37
SMARCC2-210ENST00000550519 GRIN3BO60391 1043 aa29.85■■■□□ 2.37
SMARCC2-210ENST00000550519 LINC00116Q8NCU8 138 aa29.85■■■□□ 2.37
SMARCC2-210ENST00000550519 IGSF1Q8N6C5 1336 aa29.85■■■□□ 2.37
SMARCC2-210ENST00000550519 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.84■■■□□ 2.37
SMARCC2-210ENST00000550519 SMIM5Q71RC9 77 aa29.84■■■□□ 2.37
SMARCC2-210ENST00000550519 SSFA2P28290 1259 aa29.83■■■□□ 2.37
SMARCC2-210ENST00000550519 PHF14O94880 888 aa29.82■■■□□ 2.36
SMARCC2-210ENST00000550519 ITPK1Q13572 414 aa29.82■■■□□ 2.36
SMARCC2-210ENST00000550519 ATG3Q9NT62 314 aa29.82■■■□□ 2.36
SMARCC2-210ENST00000550519 UBR3Q6ZT12 1888 aa29.8■■■□□ 2.36
SMARCC2-210ENST00000550519 ATP6V1AP38606 617 aa29.79■■■□□ 2.36
SMARCC2-210ENST00000550519 C1QTNF8P60827 252 aa29.79■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms