RNA–Protein interactions for RNA: ENST00000550477.5

SMARCD1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 911 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-209ENST00000550477 LRRC4BQ9NT99 713 aa32.16■■■□□ 2.74
SMARCD1-209ENST00000550477 HMGB2P26583 209 aaKnown RBP32.15■■■□□ 2.74
SMARCD1-209ENST00000550477 ZNF827Q17R98 1081 aa32.13■■■□□ 2.73
SMARCD1-209ENST00000550477 SGIP1Q9BQI5 828 aa32.13■■■□□ 2.73
SMARCD1-209ENST00000550477 TFCP2L1Q9NZI6 479 aa32.13■■■□□ 2.73
SMARCD1-209ENST00000550477 POLD1P28340 1107 aa32.12■■■□□ 2.73
SMARCD1-209ENST00000550477 AKT1S1Q96B36 256 aa32.12■■■□□ 2.73
SMARCD1-209ENST00000550477 PAPPAQ13219 1627 aa32.11■■■□□ 2.73
SMARCD1-209ENST00000550477 TATP17735 454 aaPredicted RBP32.11■■■□□ 2.73
SMARCD1-209ENST00000550477 NBPF6Q5VWK0 638 aa32.11■■■□□ 2.73
SMARCD1-209ENST00000550477 NBPF4Q96M43 638 aa32.11■■■□□ 2.73
SMARCD1-209ENST00000550477 TIMELESSQ9UNS1 1208 aa32.09■■■□□ 2.73
SMARCD1-209ENST00000550477 RGPD2P0DJD1 1756 aa32.07■■■□□ 2.72
SMARCD1-209ENST00000550477 KIF24Q5T7B8 1368 aa32.07■■■□□ 2.72
SMARCD1-209ENST00000550477 CCNL1Q9UK58 526 aaPredicted RBP32.06■■■□□ 2.72
SMARCD1-209ENST00000550477 INSRP06213 1382 aa32.06■■■□□ 2.72
SMARCD1-209ENST00000550477 USHBP1Q8N6Y0 703 aa32.05■■■□□ 2.72
SMARCD1-209ENST00000550477 FLT4P35916 1363 aa32.05■■■□□ 2.72
SMARCD1-209ENST00000550477 MEGF6O75095 1541 aa32.05■■■□□ 2.72
SMARCD1-209ENST00000550477 MAP3K5Q99683 1374 aa32.04■■■□□ 2.72
SMARCD1-209ENST00000550477 HSP90AB2PQ58FF8 381 aa32.03■■■□□ 2.72
SMARCD1-209ENST00000550477 DOT1LQ8TEK3 1739 aa32.03■■■□□ 2.72
SMARCD1-209ENST00000550477 PNPLA7Q6ZV29 1317 aa32.01■■■□□ 2.72
SMARCD1-209ENST00000550477 PCDH11XQ9BZA7 1347 aa32.01■■■□□ 2.72
SMARCD1-209ENST00000550477 PCDH11YQ9BZA8 1340 aa32.01■■■□□ 2.72
SMARCD1-209ENST00000550477 QSER1Q2KHR3 1735 aa32■■■□□ 2.71
SMARCD1-209ENST00000550477 KCNQ4P56696 695 aa32■■■□□ 2.71
SMARCD1-209ENST00000550477 KLHL34Q8N239 644 aa32■■■□□ 2.71
SMARCD1-209ENST00000550477 KIF20BQ96Q89 1820 aa32■■■□□ 2.71
SMARCD1-209ENST00000550477 GPR162Q16538 588 aa31.99■■■□□ 2.71
SMARCD1-209ENST00000550477 MSH5O43196 834 aa31.98■■■□□ 2.71
SMARCD1-209ENST00000550477 NSD2O96028 1365 aa31.97■■■□□ 2.71
SMARCD1-209ENST00000550477 LY75O60449 1722 aa31.96■■■□□ 2.71
SMARCD1-209ENST00000550477 SHANK3Q9BYB0 1731 aa31.95■■■□□ 2.71
SMARCD1-209ENST00000550477 PPM1GO15355 546 aaPredicted RBP31.95■■■□□ 2.71
SMARCD1-209ENST00000550477 NSD3Q9BZ95 1437 aa31.94■■■□□ 2.7
SMARCD1-209ENST00000550477 CARD14Q9BXL6 1004 aa31.94■■■□□ 2.7
SMARCD1-209ENST00000550477 CHD4Q14839 1912 aa31.94■■■□□ 2.7
SMARCD1-209ENST00000550477 MPRIPQ6WCQ1 1025 aa31.92■■■□□ 2.7
SMARCD1-209ENST00000550477 ZNF784Q8NCA9 323 aaPredicted RBP31.92■■■□□ 2.7
SMARCD1-209ENST00000550477 CLSPNQ9HAW4 1339 aa31.92■■■□□ 2.7
SMARCD1-209ENST00000550477 FLAD1Q8NFF5 587 aa31.91■■■□□ 2.7
SMARCD1-209ENST00000550477 SMARCC1Q92922 1105 aaPredicted RBP31.91■■■□□ 2.7
SMARCD1-209ENST00000550477 SPG7Q9UQ90 795 aa31.9■■■□□ 2.7
SMARCD1-209ENST00000550477 EMILIN1Q9Y6C2 1016 aa31.9■■■□□ 2.7
SMARCD1-209ENST00000550477 PELP1Q8IZL8 1130 aaKnown RBP31.88■■■□□ 2.69
SMARCD1-209ENST00000550477 PALLDQ8WX93 1383 aa31.86■■■□□ 2.69
SMARCD1-209ENST00000550477 WASHC2AQ641Q2 1341 aa31.86■■■□□ 2.69
SMARCD1-209ENST00000550477 COL23A1Q86Y22 540 aaPredicted RBP31.86■■■□□ 2.69
SMARCD1-209ENST00000550477 POLR3GLQ9BT43 218 aa31.86■■■□□ 2.69
SMARCD1-209ENST00000550477 CYP27B1O15528 508 aa31.85■■■□□ 2.69
SMARCD1-209ENST00000550477 TUBGCP6Q96RT7 1819 aa31.84■■■□□ 2.69
SMARCD1-209ENST00000550477 PCGF6Q9BYE7 350 aa31.84■■■□□ 2.69
SMARCD1-209ENST00000550477 COL24A1Q17RW2 1714 aa31.83■■■□□ 2.69
SMARCD1-209ENST00000550477 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.81■■■□□ 2.687e-6■■□□□ 12.8
SMARCD1-209ENST00000550477 NKX1-1Q15270 411 aaPredicted RBP31.8■■■□□ 2.68
SMARCD1-209ENST00000550477 AK7Q96M32 723 aa31.8■■■□□ 2.68
SMARCD1-209ENST00000550477 GRIN3BO60391 1043 aa31.79■■■□□ 2.68
SMARCD1-209ENST00000550477 MAP2P11137 1827 aaKnown RBP31.79■■■□□ 2.68
SMARCD1-209ENST00000550477 EYA1Q99502 592 aa31.78■■■□□ 2.68
SMARCD1-209ENST00000550477 C5P01031 1676 aa31.77■■■□□ 2.68
SMARCD1-209ENST00000550477 IFNL2Q8IZJ0 200 aa31.76■■■□□ 2.67
SMARCD1-209ENST00000550477 PIGBQ92521 554 aa31.76■■■□□ 2.67
SMARCD1-209ENST00000550477 TMOD3Q9NYL9 352 aa31.76■■■□□ 2.67
SMARCD1-209ENST00000550477 POLKQ9UBT6 870 aa31.76■■■□□ 2.67
SMARCD1-209ENST00000550477 EIF4G2P78344 907 aaKnown RBP eCLIP31.75■■■□□ 2.67
SMARCD1-209ENST00000550477 MSL1Q68DK7 614 aa31.75■■■□□ 2.67
SMARCD1-209ENST00000550477 NLGN2Q8NFZ4 835 aa31.75■■■□□ 2.67
SMARCD1-209ENST00000550477 ITGB4P16144 1822 aa31.74■■■□□ 2.67
SMARCD1-209ENST00000550477 PKD1L3Q7Z443 1732 aa31.74■■■□□ 2.67
SMARCD1-209ENST00000550477 NCAPD2Q15021 1401 aa31.74■■■□□ 2.67
SMARCD1-209ENST00000550477 UTRNP46939 3433 aa31.73■■■□□ 2.67
SMARCD1-209ENST00000550477 TNNT2P45379 298 aaPredicted RBP31.72■■■□□ 2.67
SMARCD1-209ENST00000550477 CD2APQ9Y5K6 639 aa31.72■■■□□ 2.67
SMARCD1-209ENST00000550477 TAF1LQ8IZX4 1826 aa31.71■■■□□ 2.67
SMARCD1-209ENST00000550477 ANKRD26Q9UPS8 1709 aa31.7■■■□□ 2.67
SMARCD1-209ENST00000550477 LOC102724428A0A0B4J2F2 783 aa31.69■■■□□ 2.66
SMARCD1-209ENST00000550477 SIK1P57059 783 aa31.69■■■□□ 2.66
SMARCD1-209ENST00000550477 PHKG2P15735 406 aa31.68■■■□□ 2.66
SMARCD1-209ENST00000550477 PHF14O94880 888 aa31.67■■■□□ 2.66
SMARCD1-209ENST00000550477 EIF4A2Q14240 407 aaKnown RBP31.67■■■□□ 2.66
SMARCD1-209ENST00000550477 C4BP0C0L5 1744 aa31.66■■■□□ 2.66
SMARCD1-209ENST00000550477 SSFA2P28290 1259 aa31.66■■■□□ 2.66
SMARCD1-209ENST00000550477 PLEKHG2Q9H7P9 1386 aa31.66■■■□□ 2.66
SMARCD1-209ENST00000550477 TOGARAM1Q9Y4F4 1720 aa31.66■■■□□ 2.66
SMARCD1-209ENST00000550477 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.65■■■□□ 2.66
SMARCD1-209ENST00000550477 HSP90AB1P08238 724 aaKnown RBP31.65■■■□□ 2.66
SMARCD1-209ENST00000550477 ATP6V1AP38606 617 aa31.64■■■□□ 2.66
SMARCD1-209ENST00000550477 C1QTNF8P60827 252 aa31.64■■■□□ 2.66
SMARCD1-209ENST00000550477 PANK3Q9H999 370 aa31.64■■■□□ 2.66
SMARCD1-209ENST00000550477 GIGYF1O75420 1035 aaPredicted RBP31.62■■■□□ 2.65
SMARCD1-209ENST00000550477 HSPA5P11021 654 aaKnown RBP31.62■■■□□ 2.65
SMARCD1-209ENST00000550477 ASAP1Q9ULH1 1129 aa31.62■■■□□ 2.65
SMARCD1-209ENST00000550477 YBX3P16989 372 aaKnown RBP eCLIP31.61■■■□□ 2.65
SMARCD1-209ENST00000550477 PLEKHO1Q53GL0 409 aaPredicted RBP31.61■■■□□ 2.65
SMARCD1-209ENST00000550477 ERVV-2B6SEH9 535 aa31.59■■■□□ 2.65
SMARCD1-209ENST00000550477 LINC00116Q8NCU8 138 aa31.59■■■□□ 2.65
SMARCD1-209ENST00000550477 GNPATO15228 680 aa31.58■■■□□ 2.65
SMARCD1-209ENST00000550477 AMOTQ4VCS5 1084 aa31.58■■■□□ 2.65
SMARCD1-209ENST00000550477 MORC1Q86VD1 984 aa31.58■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms