RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 NUTM2BA6NNL0 878 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 NUTM2EB1AL46 878 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 NUTM2DQ5VT03 806 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 NUTM2AQ8IVF1 878 aaPredicted RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 RRBP1Q9P2E9 1410 aaKnown RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 RBM25P49756 843 aaKnown RBP11.5□□□□□ -0.57
PTCH1-220ENST00000550136 DONSONQ9NYP3 566 aa11.5□□□□□ -0.57
PTCH1-220ENST00000550136 DUOX2Q9NRD8 1548 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 MAFGO15525 162 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 CDCA8Q53HL2 280 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 ICE2Q659A1 982 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 CADPS2Q86UW7 1296 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 ZNF692Q9BU19 519 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-220ENST00000550136 PRKRIP1Q9H875 184 aaPredicted RBP11.49□□□□□ -0.57
PTCH1-220ENST00000550136 QTRT2Q9H974 415 aaKnown RBP11.49□□□□□ -0.57
PTCH1-220ENST00000550136 ADGRB3O60242 1522 aa11.49□□□□□ -0.57
PTCH1-220ENST00000550136 UPF2Q9HAU5 1272 aaKnown RBP11.49□□□□□ -0.57
PTCH1-220ENST00000550136 SETD5Q9C0A6 1442 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 KIF1CO43896 1103 aaKnown RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 CC2D2BQ6DHV5 1058 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 SGSM3Q96HU1 749 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 RBM28Q9NW13 759 aaKnown RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 USP19O94966 1318 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 DHX16O60231 1041 aaKnown RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 IDI1Q13907 227 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 OTUD6BQ8N6M0 293 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 SPDYE1Q8NFV5 336 aaPredicted RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 NGLY1Q96IV0 654 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 BSDC1Q9NW68 430 aaPredicted RBP11.48□□□□□ -0.57
PTCH1-220ENST00000550136 RSPH14Q9UHP6 348 aa11.48□□□□□ -0.57
PTCH1-220ENST00000550136 GUCY2CP25092 1073 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 SSR1P43307 286 aaKnown RBP11.47□□□□□ -0.57
PTCH1-220ENST00000550136 SKAP1Q86WV1 359 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 TERF2IPQ9NYB0 399 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 KDM2BQ8NHM5 1336 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 RAD50Q92878 1312 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 SP7Q8TDD2 431 aaPredicted RBP11.47□□□□□ -0.57
PTCH1-220ENST00000550136 C19orf44Q9H6X5 657 aa11.47□□□□□ -0.57
PTCH1-220ENST00000550136 PLEKHG1Q9ULL1 1385 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 ATF3P18847 181 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 U2AF2P26368 475 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTCH1-220ENST00000550136 TERF2Q15554 542 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 NBPF6Q5VWK0 638 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 NBPF5PQ86XG9 351 aaPredicted RBP11.46□□□□□ -0.57
PTCH1-220ENST00000550136 CCDC125Q86Z20 511 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 CREBRFQ8IUR6 639 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTCH1-220ENST00000550136 NBPF4Q96M43 638 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 MYOM3Q5VTT5 1437 aa11.46□□□□□ -0.57
PTCH1-220ENST00000550136 ZKSCAN8Q15776 578 aaPredicted RBP11.46□□□□□ -0.58
PTCH1-220ENST00000550136 PDLIM2Q96JY6 352 aa11.46□□□□□ -0.58
PTCH1-220ENST00000550136 SSUH2Q9Y2M2 353 aa11.46□□□□□ -0.58
PTCH1-220ENST00000550136 IBTKQ9P2D0 1353 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-220ENST00000550136 HSP90AB1P08238 724 aaKnown RBP11.45□□□□□ -0.58
PTCH1-220ENST00000550136 BRINP3Q76B58 766 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 LMTK2Q8IWU2 1503 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 RAB3GAP2Q9H2M9 1393 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 SKOR2Q2VWA4 1001 aaPredicted RBP11.45□□□□□ -0.58
PTCH1-220ENST00000550136 ANKRD7Q92527 254 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 CHMP5Q9NZZ3 219 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 TBX22Q9Y458 520 aa11.45□□□□□ -0.58
PTCH1-220ENST00000550136 ERBINQ96RT1 1412 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 LRP5O75197 1615 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 NHSL1Q5SYE7 1610 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 RGL3Q3MIN7 710 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 ZFYVE9O95405 1425 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 NOS1P29475 1434 aa11.44□□□□□ -0.58
PTCH1-220ENST00000550136 ZNF853P0CG23 659 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 CENPQQ7L2Z9 268 aaPredicted RBP11.43□□□□□ -0.58
PTCH1-220ENST00000550136 MNS1Q8NEH6 495 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 C8orf37Q96NL8 207 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 BCL2L12Q9HB09 334 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 ASXL1Q8IXJ9 1541 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 KANK1Q14678 1352 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 TDO2P48775 406 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 RASSF4Q9H2L5 321 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 MED4Q9NPJ6 270 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 DCCP43146 1447 aa11.43□□□□□ -0.58
PTCH1-220ENST00000550136 PIK3R4Q99570 1358 aa11.42□□□□□ -0.58
PTCH1-220ENST00000550136 ZNF526Q8TF50 670 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-220ENST00000550136 TSC1Q92574 1164 aa11.42□□□□□ -0.58
PTCH1-220ENST00000550136 JARID2Q92833 1246 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-220ENST00000550136 LRRC59Q96AG4 307 aaKnown RBP11.42□□□□□ -0.58
PTCH1-220ENST00000550136 HAX1O00165 279 aa11.42□□□□□ -0.58
PTCH1-220ENST00000550136 PNISRQ8TF01 805 aaKnown RBP11.42□□□□□ -0.58
PTCH1-220ENST00000550136 PNPLA6Q8IY17 1366 aa11.41□□□□□ -0.58
PTCH1-220ENST00000550136 HDGFP51858 240 aaKnown RBP11.41□□□□□ -0.58
PTCH1-220ENST00000550136 RAD51AP2Q09MP3 1159 aa11.41□□□□□ -0.58
PTCH1-220ENST00000550136 RCAN3Q9UKA8 241 aa11.41□□□□□ -0.58
PTCH1-220ENST00000550136 CLEC11AQ9Y240 323 aa11.41□□□□□ -0.58
PTCH1-220ENST00000550136 CCDC39Q9UFE4 941 aa11.41□□□□□ -0.58
PTCH1-220ENST00000550136 CASC1Q6TDU7 716 aa11.4□□□□□ -0.58
PTCH1-220ENST00000550136 KIF15Q9NS87 1388 aa11.4□□□□□ -0.58
PTCH1-220ENST00000550136 RIMS2Q9UQ26 1411 aa11.4□□□□□ -0.58
PTCH1-220ENST00000550136 CCDC189A1A4V9 331 aa11.4□□□□□ -0.58
PTCH1-220ENST00000550136 BORCS6Q96GS4 357 aa11.4□□□□□ -0.58
PTCH1-220ENST00000550136 KIAA2012Q0VF49 1180 aa11.39□□□□□ -0.59
PTCH1-220ENST00000550136 TBC1D2Q9BYX2 928 aa11.39□□□□□ -0.59
PTCH1-220ENST00000550136 TRPC5Q9UL62 973 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms