RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 PTF1AQ7RTS3 328 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 PROM2Q8N271 834 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 STK32BQ9NY57 414 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 EMILIN1Q9Y6C2 1016 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 NHSQ6T4R5 1651 aa9.89□□□□□ -0.83
PTCH1-219ENST00000549678 HMGB2P26583 209 aaKnown RBP9.88□□□□□ -0.83
PTCH1-219ENST00000549678 HSP90AB2PQ58FF8 381 aa9.88□□□□□ -0.83
PTCH1-219ENST00000549678 RAPGEF4Q8WZA2 1011 aa9.88□□□□□ -0.83
PTCH1-219ENST00000549678 ANO8Q9HCE9 1232 aaPredicted RBP9.88□□□□□ -0.83
PTCH1-219ENST00000549678 PPP1R1BQ9UD71 204 aaPredicted RBP9.88□□□□□ -0.83
PTCH1-219ENST00000549678 INSRP06213 1382 aa9.88□□□□□ -0.83
PTCH1-219ENST00000549678 SLC15A2Q16348 729 aa9.87□□□□□ -0.83
PTCH1-219ENST00000549678 DCAF8L1A6NGE4 600 aa9.86□□□□□ -0.83
PTCH1-219ENST00000549678 TATP17735 454 aaPredicted RBP9.86□□□□□ -0.83
PTCH1-219ENST00000549678 SLC27A3Q5K4L6 730 aa9.86□□□□□ -0.83
PTCH1-219ENST00000549678 USHBP1Q8N6Y0 703 aa9.86□□□□□ -0.83
PTCH1-219ENST00000549678 ZCRB1Q8TBF4 217 aaKnown RBP9.86□□□□□ -0.83
PTCH1-219ENST00000549678 ACSBG1Q96GR2 724 aa9.85□□□□□ -0.83
PTCH1-219ENST00000549678 CASZ1Q86V15 1759 aa9.85□□□□□ -0.83
PTCH1-219ENST00000549678 GOLGB1Q14789 3259 aaKnown RBP9.85□□□□□ -0.83
PTCH1-219ENST00000549678 NBPF6Q5VWK0 638 aa9.84□□□□□ -0.83
PTCH1-219ENST00000549678 DDX54Q8TDD1 881 aaKnown RBP9.84□□□□□ -0.83
PTCH1-219ENST00000549678 NBPF4Q96M43 638 aa9.84□□□□□ -0.83
PTCH1-219ENST00000549678 MTFR1LQ9H019 292 aa9.84□□□□□ -0.83
PTCH1-219ENST00000549678 POLKQ9UBT6 870 aa9.84□□□□□ -0.83
PTCH1-219ENST00000549678 BTAF1O14981 1849 aa9.84□□□□□ -0.83
PTCH1-219ENST00000549678 AMER1Q5JTC6 1135 aaPredicted RBP9.83□□□□□ -0.84
PTCH1-219ENST00000549678 MEGF6O75095 1541 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 PAPPAQ13219 1627 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 DOT1LQ8TEK3 1739 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 SLC16A10Q8TF71 515 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 SYTL4Q96C24 671 aaPredicted RBP9.82□□□□□ -0.84
PTCH1-219ENST00000549678 PLEKHG2Q9H7P9 1386 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 PCDH11XQ9BZA7 1347 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 PCDH11YQ9BZA8 1340 aa9.82□□□□□ -0.84
PTCH1-219ENST00000549678 ZBTB7AO95365 584 aa9.81□□□□□ -0.84
PTCH1-219ENST00000549678 PTGER2P43116 358 aa9.81□□□□□ -0.84
PTCH1-219ENST00000549678 PRIM1P49642 420 aaKnown RBP9.81□□□□□ -0.84
PTCH1-219ENST00000549678 EIF4A2Q14240 407 aaKnown RBP9.81□□□□□ -0.84
PTCH1-219ENST00000549678 CFAP53Q96M91 514 aa9.81□□□□□ -0.84
PTCH1-219ENST00000549678 PDGFDQ9GZP0 370 aaPredicted RBP9.81□□□□□ -0.84
PTCH1-219ENST00000549678 SHANK3Q9BYB0 1731 aa9.81□□□□□ -0.84
PTCH1-219ENST00000549678 NPC1L1Q9UHC9 1359 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 PER1O15534 1290 aaPredicted RBP9.8□□□□□ -0.84
PTCH1-219ENST00000549678 MTHFSP49914 203 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 AKT1S1Q96B36 256 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 EYA1Q99502 592 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 LRRC4BQ9NT99 713 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.8□□□□□ -0.84
PTCH1-219ENST00000549678 SPG7Q9UQ90 795 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 NCAPD2Q15021 1401 aa9.8□□□□□ -0.84
PTCH1-219ENST00000549678 PKD1L3Q7Z443 1732 aa9.79□□□□□ -0.84
PTCH1-219ENST00000549678 MAP3K5Q99683 1374 aa9.79□□□□□ -0.84
PTCH1-219ENST00000549678 DDX10Q13206 875 aaKnown RBP9.79□□□□□ -0.84
PTCH1-219ENST00000549678 SGIP1Q9BQI5 828 aa9.79□□□□□ -0.84
PTCH1-219ENST00000549678 ATF5Q9Y2D1 282 aaPredicted RBP9.79□□□□□ -0.84
PTCH1-219ENST00000549678 QSER1Q2KHR3 1735 aa9.79□□□□□ -0.84
PTCH1-219ENST00000549678 U2SURPO15042 1029 aaKnown RBP9.78□□□□□ -0.84
PTCH1-219ENST00000549678 DIAPH1O60610 1272 aaKnown RBP9.78□□□□□ -0.84
PTCH1-219ENST00000549678 ZNF827Q17R98 1081 aa9.78□□□□□ -0.84
PTCH1-219ENST00000549678 CCNL1Q9UK58 526 aaPredicted RBP9.78□□□□□ -0.84
PTCH1-219ENST00000549678 LY75O60449 1722 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 POLD1P28340 1107 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 NKX1-1Q15270 411 aaPredicted RBP9.77□□□□□ -0.85
PTCH1-219ENST00000549678 SULT6B1Q6IMI4 303 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 SMARCC1Q92922 1105 aaPredicted RBP9.77□□□□□ -0.85
PTCH1-219ENST00000549678 ARXQ96QS3 562 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 TFCP2L1Q9NZI6 479 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 IGSF1Q8N6C5 1336 aa9.77□□□□□ -0.85
PTCH1-219ENST00000549678 CYP27B1O15528 508 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 YY1P25490 414 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 PLEKHO1Q53GL0 409 aaPredicted RBP9.76□□□□□ -0.85
PTCH1-219ENST00000549678 C1orf141Q5JVX7 400 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 FLAD1Q8NFF5 587 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 SYT17Q9BSW7 474 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 FHDC1Q9C0D6 1143 aaPredicted RBP9.76□□□□□ -0.85
PTCH1-219ENST00000549678 NUDCQ9Y266 331 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 PNPLA7Q6ZV29 1317 aa9.76□□□□□ -0.85
PTCH1-219ENST00000549678 HMOX1P09601 288 aa9.75□□□□□ -0.85
PTCH1-219ENST00000549678 IFNL2Q8IZJ0 200 aa9.75□□□□□ -0.85
PTCH1-219ENST00000549678 ITGB4P16144 1822 aa9.75□□□□□ -0.85
PTCH1-219ENST00000549678 NEFMP07197 916 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 PPP2R1AP30153 589 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 IL13P35225 146 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 AMOTQ4VCS5 1084 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 ZNF530Q6P9A1 599 aaPredicted RBP9.74□□□□□ -0.85
PTCH1-219ENST00000549678 AEBP1Q8IUX7 1158 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 PALLDQ8WX93 1383 aa9.74□□□□□ -0.85
PTCH1-219ENST00000549678 HSP90AB1P08238 724 aaKnown RBP9.73□□□□□ -0.85
PTCH1-219ENST00000549678 MPRIPQ6WCQ1 1025 aa9.73□□□□□ -0.85
PTCH1-219ENST00000549678 COL24A1Q17RW2 1714 aa9.73□□□□□ -0.85
PTCH1-219ENST00000549678 TOGARAM1Q9Y4F4 1720 aa9.73□□□□□ -0.85
PTCH1-219ENST00000549678 VIRMAQ69YN4 1812 aaKnown RBP9.72□□□□□ -0.85
PTCH1-219ENST00000549678 PHKG2P15735 406 aa9.72□□□□□ -0.85
PTCH1-219ENST00000549678 TMOD3Q9NYL9 352 aa9.72□□□□□ -0.85
PTCH1-219ENST00000549678 ZNF316A6NFI3 1004 aaPredicted RBP9.71□□□□□ -0.86
PTCH1-219ENST00000549678 U2AF1L5P0DN76 240 aaPredicted RBP9.71□□□□□ -0.86
PTCH1-219ENST00000549678 U2AF1Q01081 240 aaKnown RBP eCLIP9.71□□□□□ -0.86
PTCH1-219ENST00000549678 RALBP1Q15311 655 aa9.71□□□□□ -0.86
PTCH1-219ENST00000549678 PIGBQ92521 554 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms