RNA–Protein interactions for RNA: ENST00000546626.1

PRPF40B-205, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 630 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-205ENST00000546626 USHBP1Q8N6Y0 703 aa18.91■□□□□ 0.62
PRPF40B-205ENST00000546626 SYTL4Q96C24 671 aaPredicted RBP18.91■□□□□ 0.62
PRPF40B-205ENST00000546626 EMILIN1Q9Y6C2 1016 aa18.91■□□□□ 0.62
PRPF40B-205ENST00000546626 PPM1GO15355 546 aaPredicted RBP18.9■□□□□ 0.62
PRPF40B-205ENST00000546626 MEGF6O75095 1541 aa18.9■□□□□ 0.62
PRPF40B-205ENST00000546626 WASHC2AQ641Q2 1341 aa18.89■□□□□ 0.61
PRPF40B-205ENST00000546626 ZBTB7AO95365 584 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 MYOM1P52179 1685 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 KIF20BQ96Q89 1820 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 PCDH11XQ9BZA7 1347 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 PCDH11YQ9BZA8 1340 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 PANK3Q9H999 370 aa18.87■□□□□ 0.61
PRPF40B-205ENST00000546626 HMGB2P26583 209 aaKnown RBP18.86■□□□□ 0.61
PRPF40B-205ENST00000546626 MTFR1LQ9H019 292 aa18.86■□□□□ 0.61
PRPF40B-205ENST00000546626 LRRC4BQ9NT99 713 aa18.86■□□□□ 0.61
PRPF40B-205ENST00000546626 POLKQ9UBT6 870 aa18.86■□□□□ 0.61
PRPF40B-205ENST00000546626 DCAF8L1A6NGE4 600 aa18.85■□□□□ 0.61
PRPF40B-205ENST00000546626 PDGFDQ9GZP0 370 aaPredicted RBP18.85■□□□□ 0.61
PRPF40B-205ENST00000546626 ATF5Q9Y2D1 282 aaPredicted RBP18.84■□□□□ 0.61
PRPF40B-205ENST00000546626 NSD2O96028 1365 aa18.83■□□□□ 0.61
PRPF40B-205ENST00000546626 SPG7Q9UQ90 795 aa18.83■□□□□ 0.6
PRPF40B-205ENST00000546626 PTGER2P43116 358 aa18.82■□□□□ 0.6
PRPF40B-205ENST00000546626 TNNT2P45379 298 aaPredicted RBP18.82■□□□□ 0.6
PRPF40B-205ENST00000546626 AKT1S1Q96B36 256 aa18.82■□□□□ 0.6
PRPF40B-205ENST00000546626 EYA1Q99502 592 aa18.82■□□□□ 0.6
PRPF40B-205ENST00000546626 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.82■□□□□ 0.6
PRPF40B-205ENST00000546626 BTAF1O14981 1849 aa18.81■□□□□ 0.6
PRPF40B-205ENST00000546626 ZNF827Q17R98 1081 aa18.81■□□□□ 0.6
PRPF40B-205ENST00000546626 SLC16A10Q8TF71 515 aa18.81■□□□□ 0.6
PRPF40B-205ENST00000546626 CYP27B1O15528 508 aa18.8■□□□□ 0.6
PRPF40B-205ENST00000546626 CCNL1Q9UK58 526 aaPredicted RBP18.8■□□□□ 0.6
PRPF40B-205ENST00000546626 KNSTRNQ9Y448 316 aa18.8■□□□□ 0.6
PRPF40B-205ENST00000546626 NCAPD2Q15021 1401 aa18.8■□□□□ 0.6
PRPF40B-205ENST00000546626 CASZ1Q86V15 1759 aa18.8■□□□□ 0.6
PRPF40B-205ENST00000546626 RGPD2P0DJD1 1756 aa18.79■□□□□ 0.6
PRPF40B-205ENST00000546626 TFCP2L1Q9NZI6 479 aa18.79■□□□□ 0.6
PRPF40B-205ENST00000546626 KAT6BQ8WYB5 2073 aa18.78■□□□□ 0.6
PRPF40B-205ENST00000546626 EIF4A2Q14240 407 aaKnown RBP18.78■□□□□ 0.6
PRPF40B-205ENST00000546626 NKX1-1Q15270 411 aaPredicted RBP18.78■□□□□ 0.6
PRPF40B-205ENST00000546626 MORC1Q86VD1 984 aa18.78■□□□□ 0.6
PRPF40B-205ENST00000546626 MPRIPQ6WCQ1 1025 aa18.77■□□□□ 0.6
PRPF40B-205ENST00000546626 SMARCC1Q92922 1105 aaPredicted RBP18.77■□□□□ 0.6
PRPF40B-205ENST00000546626 PAPPAQ13219 1627 aa18.77■□□□□ 0.6
PRPF40B-205ENST00000546626 SGIP1Q9BQI5 828 aa18.76■□□□□ 0.59
PRPF40B-205ENST00000546626 PLEKHG2Q9H7P9 1386 aa18.76■□□□□ 0.59
PRPF40B-205ENST00000546626 KCNQ4P56696 695 aa18.75■□□□□ 0.59
PRPF40B-205ENST00000546626 IFNL2Q8IZJ0 200 aa18.75■□□□□ 0.59
PRPF40B-205ENST00000546626 ARXQ96QS3 562 aa18.75■□□□□ 0.59
PRPF40B-205ENST00000546626 DOT1LQ8TEK3 1739 aa18.74■□□□□ 0.59
PRPF40B-205ENST00000546626 SHANK3Q9BYB0 1731 aa18.74■□□□□ 0.59
PRPF40B-205ENST00000546626 PNPLA7Q6ZV29 1317 aa18.74■□□□□ 0.59
PRPF40B-205ENST00000546626 POLD1P28340 1107 aa18.73■□□□□ 0.59
PRPF40B-205ENST00000546626 FHDC1Q9C0D6 1143 aaPredicted RBP18.73■□□□□ 0.59
PRPF40B-205ENST00000546626 ANKRD26Q9UPS8 1709 aa18.73■□□□□ 0.59
PRPF40B-205ENST00000546626 IGSF1Q8N6C5 1336 aa18.73■□□□□ 0.59
PRPF40B-205ENST00000546626 PALLDQ8WX93 1383 aa18.72■□□□□ 0.59
PRPF40B-205ENST00000546626 PHKG2P15735 406 aa18.72■□□□□ 0.59
PRPF40B-205ENST00000546626 PIGBQ92521 554 aa18.72■□□□□ 0.59
PRPF40B-205ENST00000546626 SYT17Q9BSW7 474 aa18.72■□□□□ 0.59
PRPF40B-205ENST00000546626 KIF7Q2M1P5 1343 aa18.72■□□□□ 0.59
PRPF40B-205ENST00000546626 FLAD1Q8NFF5 587 aa18.71■□□□□ 0.59
PRPF40B-205ENST00000546626 MAP2P11137 1827 aaKnown RBP18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 HSP90AB1P08238 724 aaKnown RBP18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 AMOTQ4VCS5 1084 aa18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 PLEKHO1Q53GL0 409 aaPredicted RBP18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 AMER1Q5JTC6 1135 aaPredicted RBP18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 TMOD3Q9NYL9 352 aa18.7■□□□□ 0.58
PRPF40B-205ENST00000546626 MAP3K5Q99683 1374 aa18.68■□□□□ 0.58
PRPF40B-205ENST00000546626 MSH5O43196 834 aa18.68■□□□□ 0.58
PRPF40B-205ENST00000546626 YY1P25490 414 aa18.68■□□□□ 0.58
PRPF40B-205ENST00000546626 LY75O60449 1722 aa18.68■□□□□ 0.58
PRPF40B-205ENST00000546626 PKD1L3Q7Z443 1732 aa18.67■□□□□ 0.58
PRPF40B-205ENST00000546626 ERVV-2B6SEH9 535 aa18.66■□□□□ 0.58
PRPF40B-205ENST00000546626 COL23A1Q86Y22 540 aaPredicted RBP18.66■□□□□ 0.58
PRPF40B-205ENST00000546626 DCAF5Q96JK2 942 aa18.66■□□□□ 0.58
PRPF40B-205ENST00000546626 LOC102724428A0A0B4J2F2 783 aa18.65■□□□□ 0.58
PRPF40B-205ENST00000546626 SIK1P57059 783 aa18.65■□□□□ 0.58
PRPF40B-205ENST00000546626 AK7Q96M32 723 aa18.65■□□□□ 0.58
PRPF40B-205ENST00000546626 PER1O15534 1290 aaPredicted RBP18.64■□□□□ 0.57
PRPF40B-205ENST00000546626 QSER1Q2KHR3 1735 aa18.63■□□□□ 0.57
PRPF40B-205ENST00000546626 IL13P35225 146 aa18.63■□□□□ 0.57
PRPF40B-205ENST00000546626 SULT6B1Q6IMI4 303 aa18.63■□□□□ 0.57
PRPF40B-205ENST00000546626 ZNF530Q6P9A1 599 aaPredicted RBP18.63■□□□□ 0.57
PRPF40B-205ENST00000546626 ASAP1Q9ULH1 1129 aa18.63■□□□□ 0.57
PRPF40B-205ENST00000546626 C1orf141Q5JVX7 400 aa18.62■□□□□ 0.57
PRPF40B-205ENST00000546626 MTHFSP49914 203 aa18.61■□□□□ 0.57
PRPF40B-205ENST00000546626 ATG3Q9NT62 314 aa18.61■□□□□ 0.57
PRPF40B-205ENST00000546626 ATP6V1AP38606 617 aa18.6■□□□□ 0.57
PRPF40B-205ENST00000546626 CABP4P57796 275 aa18.6■□□□□ 0.57
PRPF40B-205ENST00000546626 AEBP1Q8IUX7 1158 aa18.6■□□□□ 0.57
PRPF40B-205ENST00000546626 KLHL34Q8N239 644 aa18.6■□□□□ 0.57
PRPF40B-205ENST00000546626 KDRP35968 1356 aa18.59■□□□□ 0.57
PRPF40B-205ENST00000546626 SSFA2P28290 1259 aa18.59■□□□□ 0.57
PRPF40B-205ENST00000546626 CC2D1BQ5T0F9 858 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-205ENST00000546626 NPC1L1Q9UHC9 1359 aa18.58■□□□□ 0.57
PRPF40B-205ENST00000546626 TOGARAM1Q9Y4F4 1720 aa18.58■□□□□ 0.57
PRPF40B-205ENST00000546626 LINC00116Q8NCU8 138 aa18.58■□□□□ 0.56
PRPF40B-205ENST00000546626 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.57■□□□□ 0.56
PRPF40B-205ENST00000546626 GPR162Q16538 588 aa18.57■□□□□ 0.56
PRPF40B-205ENST00000546626 MSL1Q68DK7 614 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms