RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 TRIM37O94972 964 aa22.58■■□□□ 1.21
LTBR-215ENST00000546296 SPG7Q9UQ90 795 aa22.58■■□□□ 1.21
LTBR-215ENST00000546296 NUDCQ9Y266 331 aa22.58■■□□□ 1.21
LTBR-215ENST00000546296 NCAPD2Q15021 1401 aa22.57■■□□□ 1.2
LTBR-215ENST00000546296 AEBP1Q8IUX7 1158 aa22.57■■□□□ 1.2
LTBR-215ENST00000546296 HMOX1P09601 288 aa22.56■■□□□ 1.2
LTBR-215ENST00000546296 MYBBP1AQ9BQG0 1328 aaKnown RBP22.55■■□□□ 1.2
LTBR-215ENST00000546296 EP400Q96L91 3159 aa22.54■■□□□ 1.2
LTBR-215ENST00000546296 PRKRIP1Q9H875 184 aaPredicted RBP22.54■■□□□ 1.2
LTBR-215ENST00000546296 PCDH11XQ9BZA7 1347 aa22.54■■□□□ 1.2
LTBR-215ENST00000546296 PCDH11YQ9BZA8 1340 aa22.54■■□□□ 1.2
LTBR-215ENST00000546296 PLEKHO1Q53GL0 409 aaPredicted RBP22.53■■□□□ 1.2
LTBR-215ENST00000546296 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.53■■□□□ 1.2
LTBR-215ENST00000546296 COL3A1P02461 1466 aaPredicted RBP22.53■■□□□ 1.2
LTBR-215ENST00000546296 ACSBG1Q96GR2 724 aa22.52■■□□□ 1.2
LTBR-215ENST00000546296 U2AF1L5P0DN76 240 aaPredicted RBP22.51■■□□□ 1.19
LTBR-215ENST00000546296 U2AF1Q01081 240 aaKnown RBP eCLIP22.51■■□□□ 1.19
LTBR-215ENST00000546296 AMOTQ4VCS5 1084 aa22.51■■□□□ 1.19
LTBR-215ENST00000546296 APBA3O96018 575 aa22.5■■□□□ 1.19
LTBR-215ENST00000546296 KDRP35968 1356 aa22.5■■□□□ 1.19
LTBR-215ENST00000546296 BCL9O00512 1426 aa22.49■■□□□ 1.19
LTBR-215ENST00000546296 CYP27B1O15528 508 aa22.49■■□□□ 1.19
LTBR-215ENST00000546296 ANP32CO43423 234 aa22.49■■□□□ 1.19
LTBR-215ENST00000546296 BAG6P46379 1132 aa22.49■■□□□ 1.19
LTBR-215ENST00000546296 BCL11BQ9C0K0 894 aaPredicted RBP22.49■■□□□ 1.19
LTBR-215ENST00000546296 DEFB132Q7Z7B7 95 aa22.48■■□□□ 1.19
LTBR-215ENST00000546296 IFNL2Q8IZJ0 200 aa22.48■■□□□ 1.19
LTBR-215ENST00000546296 KCNQ2O43526 872 aa22.47■■□□□ 1.19
LTBR-215ENST00000546296 ZNF530Q6P9A1 599 aaPredicted RBP22.47■■□□□ 1.19
LTBR-215ENST00000546296 SYTL4Q96C24 671 aaPredicted RBP22.47■■□□□ 1.19
LTBR-215ENST00000546296 RGPD1P0DJD0 1748 aa22.47■■□□□ 1.19
LTBR-215ENST00000546296 PLEKHG2Q9H7P9 1386 aa22.47■■□□□ 1.19
LTBR-215ENST00000546296 PHKG2P15735 406 aa22.45■■□□□ 1.18
LTBR-215ENST00000546296 PRIM1P49642 420 aaKnown RBP22.45■■□□□ 1.18
LTBR-215ENST00000546296 C1orf141Q5JVX7 400 aa22.45■■□□□ 1.18
LTBR-215ENST00000546296 PTF1AQ7RTS3 328 aa22.45■■□□□ 1.18
LTBR-215ENST00000546296 EN1Q05925 392 aaPredicted RBP22.44■■□□□ 1.18
LTBR-215ENST00000546296 FCHSD2O94868 740 aa22.42■■□□□ 1.18
LTBR-215ENST00000546296 HSP90AB1P08238 724 aaKnown RBP22.42■■□□□ 1.18
LTBR-215ENST00000546296 PRKAR2BP31323 418 aa22.42■■□□□ 1.18
LTBR-215ENST00000546296 NKX1-1Q15270 411 aaPredicted RBP22.42■■□□□ 1.18
LTBR-215ENST00000546296 PKD1L3Q7Z443 1732 aa22.41■■□□□ 1.18
LTBR-215ENST00000546296 RSPH6AQ9H0K4 717 aa22.41■■□□□ 1.18
LTBR-215ENST00000546296 MTHFSDQ2M296 383 aaKnown RBP22.4■■□□□ 1.18
LTBR-215ENST00000546296 SHANK3Q9BYB0 1731 aa22.4■■□□□ 1.18
LTBR-215ENST00000546296 NEFMP07197 916 aa22.39■■□□□ 1.17
LTBR-215ENST00000546296 WDR43Q15061 677 aaKnown RBP eCLIP22.38■■□□□ 1.17
LTBR-215ENST00000546296 EZH2Q15910 746 aaKnown RBP22.38■■□□□ 1.17
LTBR-215ENST00000546296 AKAP4Q5JQC9 854 aa22.38■■□□□ 1.17
LTBR-215ENST00000546296 MPRIPQ6WCQ1 1025 aa22.38■■□□□ 1.17
LTBR-215ENST00000546296 DCAF5Q96JK2 942 aa22.38■■□□□ 1.17
LTBR-215ENST00000546296 PNNQ9H307 717 aaKnown RBP22.38■■□□□ 1.17
LTBR-215ENST00000546296 PLSCR1O15162 318 aa22.37■■□□□ 1.17
LTBR-215ENST00000546296 GAS2L2Q8NHY3 880 aa22.37■■□□□ 1.17
LTBR-215ENST00000546296 CAMKK2Q96RR4 588 aa22.37■■□□□ 1.17
LTBR-215ENST00000546296 PHACTR3Q96KR7 559 aa22.36■■□□□ 1.17
LTBR-215ENST00000546296 TNS1Q9HBL0 1735 aaKnown RBP22.36■■□□□ 1.17
LTBR-215ENST00000546296 SBF2Q86WG5 1849 aa22.36■■□□□ 1.17
LTBR-215ENST00000546296 TMOD3Q9NYL9 352 aa22.35■■□□□ 1.17
LTBR-215ENST00000546296 NHSQ6T4R5 1651 aa22.34■■□□□ 1.17
LTBR-215ENST00000546296 KAT6BQ8WYB5 2073 aa22.34■■□□□ 1.17
LTBR-215ENST00000546296 ERVV-2B6SEH9 535 aa22.33■■□□□ 1.17
LTBR-215ENST00000546296 CABP4P57796 275 aa22.32■■□□□ 1.16
LTBR-215ENST00000546296 PIGBQ92521 554 aa22.32■■□□□ 1.16
LTBR-215ENST00000546296 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
LTBR-215ENST00000546296 DOT1LQ8TEK3 1739 aa22.31■■□□□ 1.16
LTBR-215ENST00000546296 GNAT3A8MTJ3 354 aa22.31■■□□□ 1.16
LTBR-215ENST00000546296 LGR6Q9HBX8 967 aa22.3■■□□□ 1.16
LTBR-215ENST00000546296 RNMTO43148 476 aaKnown RBP22.29■■□□□ 1.16
LTBR-215ENST00000546296 TXNRD1Q16881 649 aa22.29■■□□□ 1.16
LTBR-215ENST00000546296 CCDC184Q52MB2 194 aa22.29■■□□□ 1.16
LTBR-215ENST00000546296 PLEKHF1Q96S99 279 aa22.29■■□□□ 1.16
LTBR-215ENST00000546296 MRS2Q9HD23 443 aa22.29■■□□□ 1.16
LTBR-215ENST00000546296 ADAMTS8Q9UP79 889 aa22.29■■□□□ 1.16
LTBR-215ENST00000546296 MAP3K5Q99683 1374 aa22.28■■□□□ 1.16
LTBR-215ENST00000546296 SMARCC1Q92922 1105 aaPredicted RBP22.28■■□□□ 1.16
LTBR-215ENST00000546296 KDM6AO15550 1401 aaPredicted RBP22.28■■□□□ 1.16
LTBR-215ENST00000546296 PROM2Q8N271 834 aa22.27■■□□□ 1.16
LTBR-215ENST00000546296 NFATC2IPQ8NCF5 419 aa22.27■■□□□ 1.16
LTBR-215ENST00000546296 RTF1Q92541 710 aaKnown RBP22.27■■□□□ 1.16
LTBR-215ENST00000546296 NBPF14Q5TI25 921 aa22.26■■□□□ 1.15
LTBR-215ENST00000546296 CCDC146Q8IYE0 955 aa22.26■■□□□ 1.15
LTBR-215ENST00000546296 BTAF1O14981 1849 aa22.26■■□□□ 1.15
LTBR-215ENST00000546296 TOGARAM1Q9Y4F4 1720 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 NFE2L2Q16236 605 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 IL17REQ8NFR9 667 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 RUNDC1Q96C34 613 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 SLC52A2Q9HAB3 445 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 ASAP1Q9ULH1 1129 aa22.24■■□□□ 1.15
LTBR-215ENST00000546296 TEFQ10587 303 aa22.23■■□□□ 1.15
LTBR-215ENST00000546296 SLC27A3Q5K4L6 730 aa22.23■■□□□ 1.15
LTBR-215ENST00000546296 DIEXFQ68CQ4 756 aaKnown RBP22.23■■□□□ 1.15
LTBR-215ENST00000546296 ATG3Q9NT62 314 aa22.23■■□□□ 1.15
LTBR-215ENST00000546296 CCNL1Q9UK58 526 aaPredicted RBP22.23■■□□□ 1.15
LTBR-215ENST00000546296 PALLDQ8WX93 1383 aa22.23■■□□□ 1.15
LTBR-215ENST00000546296 HTATSF1O43719 755 aaKnown RBP22.21■■□□□ 1.15
LTBR-215ENST00000546296 KCNQ4P56696 695 aa22.21■■□□□ 1.15
LTBR-215ENST00000546296 MCM10Q7L590 875 aa22.21■■□□□ 1.15
LTBR-215ENST00000546296 PNISRQ8TF01 805 aaKnown RBP22.2■■□□□ 1.14
LTBR-215ENST00000546296 LRRC4BQ9NT99 713 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms