RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 KCNQ2O43526 872 aa21.37■■□□□ 1.01
CCDC78-216ENST00000544996 RGPD2P0DJD1 1756 aa21.37■■□□□ 1.01
CCDC78-216ENST00000544996 NPC1L1Q9UHC9 1359 aa21.36■■□□□ 1.01
CCDC78-216ENST00000544996 PCDH11XQ9BZA7 1347 aa21.34■■□□□ 1.01
CCDC78-216ENST00000544996 PCDH11YQ9BZA8 1340 aa21.34■■□□□ 1.01
CCDC78-216ENST00000544996 NBPF14Q5TI25 921 aa21.34■■□□□ 1.01
CCDC78-216ENST00000544996 NCAPD2Q15021 1401 aa21.33■■□□□ 1.01
CCDC78-216ENST00000544996 CNGB1Q14028 1251 aaPredicted RBP21.33■■□□□ 1.01
CCDC78-216ENST00000544996 SPG7Q9UQ90 795 aa21.33■■□□□ 1.01
CCDC78-216ENST00000544996 SBF2Q86WG5 1849 aa21.33■■□□□ 1.01
CCDC78-216ENST00000544996 SYTL4Q96C24 671 aaPredicted RBP21.32■■□□□ 1
CCDC78-216ENST00000544996 PSDA5PKW4 1024 aaPredicted RBP21.31■■□□□ 1
CCDC78-216ENST00000544996 MTHFSP49914 203 aa21.31■■□□□ 1
CCDC78-216ENST00000544996 IGSF1Q8N6C5 1336 aa21.3■■□□□ 1
CCDC78-216ENST00000544996 R3HDM1Q15032 1099 aaKnown RBP21.3■■□□□ 1
CCDC78-216ENST00000544996 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.3■■□□□ 1
CCDC78-216ENST00000544996 NHSQ6T4R5 1651 aa21.29■■□□□ 1
CCDC78-216ENST00000544996 PRIM1P49642 420 aaKnown RBP21.29■■□□□ 1
CCDC78-216ENST00000544996 TXNRD1Q16881 649 aa21.29■■□□□ 1
CCDC78-216ENST00000544996 CYP27B1O15528 508 aa21.27■■□□□ 1
CCDC78-216ENST00000544996 PROM2Q8N271 834 aa21.27■■□□□ 1
CCDC78-216ENST00000544996 PLEKHG2Q9H7P9 1386 aa21.26■□□□□ 0.99
CCDC78-216ENST00000544996 RGPD3A6NKT7 1758 aaPredicted RBP21.26■□□□□ 0.99
CCDC78-216ENST00000544996 RGPD4Q7Z3J3 1758 aa21.26■□□□□ 0.99
CCDC78-216ENST00000544996 IL13P35225 146 aa21.26■□□□□ 0.99
CCDC78-216ENST00000544996 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
CCDC78-216ENST00000544996 RREB1Q92766 1687 aa21.25■□□□□ 0.99
CCDC78-216ENST00000544996 SHANK3Q9BYB0 1731 aa21.24■□□□□ 0.99
CCDC78-216ENST00000544996 DIAPH1O60610 1272 aaKnown RBP21.23■□□□□ 0.99
CCDC78-216ENST00000544996 PLEKHO1Q53GL0 409 aaPredicted RBP21.23■□□□□ 0.99
CCDC78-216ENST00000544996 SULT6B1Q6IMI4 303 aa21.23■□□□□ 0.99
CCDC78-216ENST00000544996 IFNL2Q8IZJ0 200 aa21.23■□□□□ 0.99
CCDC78-216ENST00000544996 NUP188Q5SRE5 1749 aa21.22■□□□□ 0.99
CCDC78-216ENST00000544996 NKX1-1Q15270 411 aaPredicted RBP21.22■□□□□ 0.99
CCDC78-216ENST00000544996 AMOTQ4VCS5 1084 aa21.22■□□□□ 0.99
CCDC78-216ENST00000544996 AEBP1Q8IUX7 1158 aa21.21■□□□□ 0.99
CCDC78-216ENST00000544996 PKD1L3Q7Z443 1732 aa21.21■□□□□ 0.99
CCDC78-216ENST00000544996 PHKG2P15735 406 aa21.2■□□□□ 0.98
CCDC78-216ENST00000544996 MPRIPQ6WCQ1 1025 aa21.2■□□□□ 0.98
CCDC78-216ENST00000544996 STK32BQ9NY57 414 aa21.2■□□□□ 0.98
CCDC78-216ENST00000544996 SLC27A3Q5K4L6 730 aa21.19■□□□□ 0.98
CCDC78-216ENST00000544996 CFAP53Q96M91 514 aa21.19■□□□□ 0.98
CCDC78-216ENST00000544996 BTAF1O14981 1849 aa21.19■□□□□ 0.98
CCDC78-216ENST00000544996 KDRP35968 1356 aa21.19■□□□□ 0.98
CCDC78-216ENST00000544996 DOT1LQ8TEK3 1739 aa21.18■□□□□ 0.98
CCDC78-216ENST00000544996 HSP90AB1P08238 724 aaKnown RBP21.18■□□□□ 0.98
CCDC78-216ENST00000544996 ANO8Q9HCE9 1232 aaPredicted RBP21.18■□□□□ 0.98
CCDC78-216ENST00000544996 KAT6BQ8WYB5 2073 aa21.17■□□□□ 0.98
CCDC78-216ENST00000544996 ZNF530Q6P9A1 599 aaPredicted RBP21.17■□□□□ 0.98
CCDC78-216ENST00000544996 SLC15A2Q16348 729 aa21.16■□□□□ 0.98
CCDC78-216ENST00000544996 C1orf141Q5JVX7 400 aa21.16■□□□□ 0.98
CCDC78-216ENST00000544996 HMOX1P09601 288 aa21.15■□□□□ 0.98
CCDC78-216ENST00000544996 PPP2R1AP30153 589 aa21.15■□□□□ 0.98
CCDC78-216ENST00000544996 LRRC4BQ9NT99 713 aa21.15■□□□□ 0.98
CCDC78-216ENST00000544996 TMOD3Q9NYL9 352 aa21.15■□□□□ 0.98
CCDC78-216ENST00000544996 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.97
CCDC78-216ENST00000544996 HMGB2P26583 209 aaKnown RBP21.14■□□□□ 0.97
CCDC78-216ENST00000544996 SMARCC1Q92922 1105 aaPredicted RBP21.14■□□□□ 0.97
CCDC78-216ENST00000544996 DCAF5Q96JK2 942 aa21.14■□□□□ 0.97
CCDC78-216ENST00000544996 CCNL1Q9UK58 526 aaPredicted RBP21.14■□□□□ 0.97
CCDC78-216ENST00000544996 PIGBQ92521 554 aa21.13■□□□□ 0.97
CCDC78-216ENST00000544996 DDX10Q13206 875 aaKnown RBP21.12■□□□□ 0.97
CCDC78-216ENST00000544996 ERVV-2B6SEH9 535 aa21.11■□□□□ 0.97
CCDC78-216ENST00000544996 NUDCQ9Y266 331 aa21.11■□□□□ 0.97
CCDC78-216ENST00000544996 COL3A1P02461 1466 aaPredicted RBP21.11■□□□□ 0.97
CCDC78-216ENST00000544996 PALLDQ8WX93 1383 aa21.1■□□□□ 0.97
CCDC78-216ENST00000544996 KCNQ4P56696 695 aa21.1■□□□□ 0.97
CCDC78-216ENST00000544996 CABP4P57796 275 aa21.08■□□□□ 0.97
CCDC78-216ENST00000544996 SPON1Q9HCB6 807 aa21.08■□□□□ 0.97
CCDC78-216ENST00000544996 TOGARAM1Q9Y4F4 1720 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 SRCAPQ6ZRS2 3230 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 ZNF827Q17R98 1081 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 AKAP4Q5JQC9 854 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 AKT1S1Q96B36 256 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 LRP5O75197 1615 aa21.07■□□□□ 0.96
CCDC78-216ENST00000544996 TFCP2L1Q9NZI6 479 aa21.06■□□□□ 0.96
CCDC78-216ENST00000544996 PAPPAQ13219 1627 aa21.05■□□□□ 0.96
CCDC78-216ENST00000544996 RALBP1Q15311 655 aa21.05■□□□□ 0.96
CCDC78-216ENST00000544996 ASAP1Q9ULH1 1129 aa21.05■□□□□ 0.96
CCDC78-216ENST00000544996 KDM6AO15550 1401 aaPredicted RBP21.04■□□□□ 0.96
CCDC78-216ENST00000544996 MTHFSDQ2M296 383 aaKnown RBP21.04■□□□□ 0.96
CCDC78-216ENST00000544996 PDGFDQ9GZP0 370 aaPredicted RBP21.04■□□□□ 0.96
CCDC78-216ENST00000544996 LY75O60449 1722 aa21.04■□□□□ 0.96
CCDC78-216ENST00000544996 ZBTB7AO95365 584 aa21.03■□□□□ 0.96
CCDC78-216ENST00000544996 U2AF1L5P0DN76 240 aaPredicted RBP21.03■□□□□ 0.96
CCDC78-216ENST00000544996 U2AF1Q01081 240 aaKnown RBP eCLIP21.03■□□□□ 0.96
CCDC78-216ENST00000544996 ATG3Q9NT62 314 aa21.03■□□□□ 0.96
CCDC78-216ENST00000544996 ITGB4P16144 1822 aa21.02■□□□□ 0.96
CCDC78-216ENST00000544996 LOC102724428A0A0B4J2F2 783 aa21.02■□□□□ 0.96
CCDC78-216ENST00000544996 SIK1P57059 783 aa21.02■□□□□ 0.96
CCDC78-216ENST00000544996 NFATC2IPQ8NCF5 419 aa21.01■□□□□ 0.95
CCDC78-216ENST00000544996 GAS2L2Q8NHY3 880 aa21.01■□□□□ 0.95
CCDC78-216ENST00000544996 MTFR1LQ9H019 292 aa21.01■□□□□ 0.95
CCDC78-216ENST00000544996 PPP1R1BQ9UD71 204 aaPredicted RBP21.01■□□□□ 0.95
CCDC78-216ENST00000544996 PRKAR2BP31323 418 aa21■□□□□ 0.95
CCDC78-216ENST00000544996 RSPH6AQ9H0K4 717 aa21■□□□□ 0.95
CCDC78-216ENST00000544996 FCHSD2O94868 740 aa20.99■□□□□ 0.95
CCDC78-216ENST00000544996 ATP6V1AP38606 617 aa20.99■□□□□ 0.95
CCDC78-216ENST00000544996 ATF5Q9Y2D1 282 aaPredicted RBP20.99■□□□□ 0.95
CCDC78-216ENST00000544996 CASZ1Q86V15 1759 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms