RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 R3HDM1Q15032 1099 aaKnown RBP16.09■□□□□ 0.17
HDAC4-216ENST00000544989 AMER1Q5JTC6 1135 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-216ENST00000544989 PCDH11XQ9BZA7 1347 aa16.08■□□□□ 0.16
HDAC4-216ENST00000544989 PCDH11YQ9BZA8 1340 aa16.08■□□□□ 0.16
HDAC4-216ENST00000544989 NCAPD2Q15021 1401 aa16.08■□□□□ 0.16
HDAC4-216ENST00000544989 MEGF6O75095 1541 aa16.08■□□□□ 0.16
HDAC4-216ENST00000544989 RREB1Q92766 1687 aa16.08■□□□□ 0.16
HDAC4-216ENST00000544989 USHBP1Q8N6Y0 703 aa16.07■□□□□ 0.16
HDAC4-216ENST00000544989 NPC1L1Q9UHC9 1359 aa16.07■□□□□ 0.16
HDAC4-216ENST00000544989 NHSQ6T4R5 1651 aa16.07■□□□□ 0.16
HDAC4-216ENST00000544989 RGPD2P0DJD1 1756 aa16.07■□□□□ 0.16
HDAC4-216ENST00000544989 PER1O15534 1290 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-216ENST00000544989 ACSBG1Q96GR2 724 aa16.06■□□□□ 0.16
HDAC4-216ENST00000544989 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.06■□□□□ 0.163e-6■□□□□ 8.1
HDAC4-216ENST00000544989 HMGB2P26583 209 aaKnown RBP16.05■□□□□ 0.16
HDAC4-216ENST00000544989 EIF4A2Q14240 407 aaKnown RBP16.05■□□□□ 0.16
HDAC4-216ENST00000544989 EYA1Q99502 592 aa16.05■□□□□ 0.16
HDAC4-216ENST00000544989 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
HDAC4-216ENST00000544989 KCNQ2O43526 872 aa16.04■□□□□ 0.16
HDAC4-216ENST00000544989 YY1P25490 414 aa16.04■□□□□ 0.16
HDAC4-216ENST00000544989 KAT6BQ8WYB5 2073 aa16.04■□□□□ 0.16
HDAC4-216ENST00000544989 NUP188Q5SRE5 1749 aa16.02■□□□□ 0.16
HDAC4-216ENST00000544989 IGSF1Q8N6C5 1336 aa16.02■□□□□ 0.16
HDAC4-216ENST00000544989 TXNRD1Q16881 649 aa16.02■□□□□ 0.16
HDAC4-216ENST00000544989 PTF1AQ7RTS3 328 aa16.02■□□□□ 0.16
HDAC4-216ENST00000544989 SYTL4Q96C24 671 aaPredicted RBP16.01■□□□□ 0.15
HDAC4-216ENST00000544989 PRIM1P49642 420 aaKnown RBP16■□□□□ 0.15
HDAC4-216ENST00000544989 SLC27A3Q5K4L6 730 aa16■□□□□ 0.15
HDAC4-216ENST00000544989 CC2D1BQ5T0F9 858 aaKnown RBP16■□□□□ 0.15
HDAC4-216ENST00000544989 SHANK3Q9BYB0 1731 aa15.99■□□□□ 0.15
HDAC4-216ENST00000544989 PROM2Q8N271 834 aa15.99■□□□□ 0.15
HDAC4-216ENST00000544989 STK32BQ9NY57 414 aa15.99■□□□□ 0.15
HDAC4-216ENST00000544989 PKD1L3Q7Z443 1732 aa15.99■□□□□ 0.15
HDAC4-216ENST00000544989 BTAF1O14981 1849 aa15.98■□□□□ 0.15
HDAC4-216ENST00000544989 CYP27B1O15528 508 aa15.98■□□□□ 0.15
HDAC4-216ENST00000544989 NKX1-1Q15270 411 aaPredicted RBP15.98■□□□□ 0.15
HDAC4-216ENST00000544989 AMOTQ4VCS5 1084 aa15.98■□□□□ 0.15
HDAC4-216ENST00000544989 IFNL2Q8IZJ0 200 aa15.98■□□□□ 0.15
HDAC4-216ENST00000544989 HSP90AB1P08238 724 aaKnown RBP15.97■□□□□ 0.15
HDAC4-216ENST00000544989 MTHFSP49914 203 aa15.97■□□□□ 0.15
HDAC4-216ENST00000544989 PLEKHO1Q53GL0 409 aaPredicted RBP15.97■□□□□ 0.15
HDAC4-216ENST00000544989 IL13P35225 146 aa15.96■□□□□ 0.15
HDAC4-216ENST00000544989 DOT1LQ8TEK3 1739 aa15.96■□□□□ 0.15
HDAC4-216ENST00000544989 CEP350Q5VT06 3117 aa15.96■□□□□ 0.14
HDAC4-216ENST00000544989 SLC15A2Q16348 729 aa15.95■□□□□ 0.14
HDAC4-216ENST00000544989 SMARCC1Q92922 1105 aaPredicted RBP15.95■□□□□ 0.14
HDAC4-216ENST00000544989 DIAPH1O60610 1272 aaKnown RBP15.94■□□□□ 0.14
HDAC4-216ENST00000544989 PHKG2P15735 406 aa15.94■□□□□ 0.14
HDAC4-216ENST00000544989 ANO8Q9HCE9 1232 aaPredicted RBP15.94■□□□□ 0.14
HDAC4-216ENST00000544989 KDRP35968 1356 aa15.94■□□□□ 0.14
HDAC4-216ENST00000544989 SULT6B1Q6IMI4 303 aa15.93■□□□□ 0.14
HDAC4-216ENST00000544989 CFAP53Q96M91 514 aa15.92■□□□□ 0.14
HDAC4-216ENST00000544989 SPON1Q9HCB6 807 aa15.92■□□□□ 0.14
HDAC4-216ENST00000544989 ZEB1P37275 1124 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-216ENST00000544989 C1orf141Q5JVX7 400 aa15.91■□□□□ 0.14
HDAC4-216ENST00000544989 MPRIPQ6WCQ1 1025 aa15.91■□□□□ 0.14
HDAC4-216ENST00000544989 DCAF5Q96JK2 942 aa15.91■□□□□ 0.14
HDAC4-216ENST00000544989 TMOD3Q9NYL9 352 aa15.91■□□□□ 0.14
HDAC4-216ENST00000544989 CCNL1Q9UK58 526 aaPredicted RBP15.91■□□□□ 0.14
HDAC4-216ENST00000544989 ERVV-2B6SEH9 535 aa15.9■□□□□ 0.14
HDAC4-216ENST00000544989 ZNF530Q6P9A1 599 aaPredicted RBP15.9■□□□□ 0.14
HDAC4-216ENST00000544989 LRRC4BQ9NT99 713 aa15.9■□□□□ 0.14
HDAC4-216ENST00000544989 CASZ1Q86V15 1759 aa15.9■□□□□ 0.14
HDAC4-216ENST00000544989 AEBP1Q8IUX7 1158 aa15.89■□□□□ 0.13
HDAC4-216ENST00000544989 PALLDQ8WX93 1383 aa15.88■□□□□ 0.13
HDAC4-216ENST00000544989 LY75O60449 1722 aa15.88■□□□□ 0.13
HDAC4-216ENST00000544989 CHD4Q14839 1912 aa15.88■□□□□ 0.13
HDAC4-216ENST00000544989 PAPPAQ13219 1627 aa15.88■□□□□ 0.13
HDAC4-216ENST00000544989 PIGBQ92521 554 aa15.88■□□□□ 0.13
HDAC4-216ENST00000544989 CNGB1Q14028 1251 aaPredicted RBP15.87■□□□□ 0.13
HDAC4-216ENST00000544989 AKT1S1Q96B36 256 aa15.87■□□□□ 0.13
HDAC4-216ENST00000544989 NUDCQ9Y266 331 aa15.87■□□□□ 0.13
HDAC4-216ENST00000544989 GOLGB1Q14789 3259 aaKnown RBP15.86■□□□□ 0.13
HDAC4-216ENST00000544989 AKAP4Q5JQC9 854 aa15.86■□□□□ 0.13
HDAC4-216ENST00000544989 SLC16A10Q8TF71 515 aa15.86■□□□□ 0.13
HDAC4-216ENST00000544989 MTFR1LQ9H019 292 aa15.86■□□□□ 0.13
HDAC4-216ENST00000544989 TFCP2L1Q9NZI6 479 aa15.86■□□□□ 0.13
HDAC4-216ENST00000544989 PPP1R1BQ9UD71 204 aaPredicted RBP15.86■□□□□ 0.13
HDAC4-216ENST00000544989 ITGB4P16144 1822 aa15.85■□□□□ 0.13
HDAC4-216ENST00000544989 DCAF8L1A6NGE4 600 aa15.85■□□□□ 0.13
HDAC4-216ENST00000544989 ZNF827Q17R98 1081 aa15.85■□□□□ 0.13
HDAC4-216ENST00000544989 TOGARAM1Q9Y4F4 1720 aa15.85■□□□□ 0.13
HDAC4-216ENST00000544989 COL3A1P02461 1466 aaPredicted RBP15.84■□□□□ 0.13
HDAC4-216ENST00000544989 U2SURPO15042 1029 aaKnown RBP15.84■□□□□ 0.13
HDAC4-216ENST00000544989 HMOX1P09601 288 aa15.84■□□□□ 0.13
HDAC4-216ENST00000544989 PPP2R1AP30153 589 aa15.84■□□□□ 0.13
HDAC4-216ENST00000544989 CABP4P57796 275 aa15.84■□□□□ 0.13
HDAC4-216ENST00000544989 ZNF784Q8NCA9 323 aaPredicted RBP15.84■□□□□ 0.13
HDAC4-216ENST00000544989 FLAD1Q8NFF5 587 aa15.84■□□□□ 0.13
HDAC4-216ENST00000544989 LOC102724428A0A0B4J2F2 783 aa15.82■□□□□ 0.12
HDAC4-216ENST00000544989 ZBTB7AO95365 584 aa15.82■□□□□ 0.12
HDAC4-216ENST00000544989 SIK1P57059 783 aa15.82■□□□□ 0.12
HDAC4-216ENST00000544989 QSER1Q2KHR3 1735 aa15.82■□□□□ 0.12
HDAC4-216ENST00000544989 KDM6AO15550 1401 aaPredicted RBP15.81■□□□□ 0.12
HDAC4-216ENST00000544989 GAS2L2Q8NHY3 880 aa15.81■□□□□ 0.12
HDAC4-216ENST00000544989 ASAP1Q9ULH1 1129 aa15.81■□□□□ 0.12
HDAC4-216ENST00000544989 KCNQ4P56696 695 aa15.8■□□□□ 0.12
HDAC4-216ENST00000544989 RALBP1Q15311 655 aa15.8■□□□□ 0.12
HDAC4-216ENST00000544989 AK7Q96M32 723 aa15.8■□□□□ 0.12
HDAC4-216ENST00000544989 ATG3Q9NT62 314 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms