RNA–Protein interactions for RNA: ENST00000544754.1

LMO3-231, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 555 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-231ENST00000544754 CCDC27Q2M243 656 aa16.43■□□□□ 0.22
LMO3-231ENST00000544754 MTHFSDQ2M296 383 aaKnown RBP16.43■□□□□ 0.22
LMO3-231ENST00000544754 MEX3CQ5U5Q3 659 aaKnown RBP16.43■□□□□ 0.22
LMO3-231ENST00000544754 RAPGEF4Q8WZA2 1011 aa16.43■□□□□ 0.22
LMO3-231ENST00000544754 TATP17735 454 aaPredicted RBP16.42■□□□□ 0.22
LMO3-231ENST00000544754 FNBP4Q8N3X1 1017 aaPredicted RBP16.42■□□□□ 0.22
LMO3-231ENST00000544754 TRIM35Q9UPQ4 493 aa16.42■□□□□ 0.22
LMO3-231ENST00000544754 PLEKHG2Q9H7P9 1386 aa16.41■□□□□ 0.22
LMO3-231ENST00000544754 UNC5CLQ8IV45 518 aa16.41■□□□□ 0.22
LMO3-231ENST00000544754 WWC1Q8IX03 1113 aa16.41■□□□□ 0.22
LMO3-231ENST00000544754 GAS2L2Q8NHY3 880 aa16.41■□□□□ 0.22
LMO3-231ENST00000544754 SHANK3Q9BYB0 1731 aa16.41■□□□□ 0.22
LMO3-231ENST00000544754 OVOS2A0A0G2JMS6 1433 aa16.4■□□□□ 0.22
LMO3-231ENST00000544754 PLEKHO1Q53GL0 409 aaPredicted RBP16.4■□□□□ 0.22
LMO3-231ENST00000544754 USP35Q9P2H5 1018 aa16.4■□□□□ 0.22
LMO3-231ENST00000544754 DISP2A7MBM2 1401 aa16.39■□□□□ 0.21
LMO3-231ENST00000544754 AMOTQ4VCS5 1084 aa16.39■□□□□ 0.21
LMO3-231ENST00000544754 SPATA31A1Q5TZJ5 1347 aa16.39■□□□□ 0.21
LMO3-231ENST00000544754 IL2RBP14784 551 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 USP21Q9UK80 565 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 AFF2P51816 1311 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 SPATA31A5Q5VU36 1347 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 SPATA31A7Q8IWB4 1347 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 MAP3K5Q99683 1374 aa16.38■□□□□ 0.21
LMO3-231ENST00000544754 LRRC37A3O60309 1634 aa16.37■□□□□ 0.21
LMO3-231ENST00000544754 CENPBP07199 599 aaPredicted RBP16.37■□□□□ 0.21
LMO3-231ENST00000544754 LMOD3Q0VAK6 560 aa16.37■□□□□ 0.21
LMO3-231ENST00000544754 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
LMO3-231ENST00000544754 VPS72Q15906 364 aa16.37■□□□□ 0.21
LMO3-231ENST00000544754 ZNF530Q6P9A1 599 aaPredicted RBP16.37■□□□□ 0.21
LMO3-231ENST00000544754 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.37■□□□□ 0.21
LMO3-231ENST00000544754 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 WDR63Q8IWG1 891 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 CDCA7LQ96GN5 454 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 SPG7Q9UQ90 795 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 ADAMTS7Q9UKP4 1686 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 SCN11AQ9UI33 1791 aa16.36■□□□□ 0.21
LMO3-231ENST00000544754 GNAT3A8MTJ3 354 aa16.35■□□□□ 0.21
LMO3-231ENST00000544754 DCTN1Q14203 1278 aa16.35■□□□□ 0.21
LMO3-231ENST00000544754 THUMPD2Q9BTF0 503 aaKnown RBP16.35■□□□□ 0.21
LMO3-231ENST00000544754 THRAP3Q9Y2W1 955 aaKnown RBP16.35■□□□□ 0.21
LMO3-231ENST00000544754 CCDC9Q9Y3X0 531 aaKnown RBP16.35■□□□□ 0.21
LMO3-231ENST00000544754 GLI3P10071 1580 aa16.34■□□□□ 0.21
LMO3-231ENST00000544754 HTATSF1O43719 755 aaKnown RBP16.34■□□□□ 0.21
LMO3-231ENST00000544754 AKAP4Q5JQC9 854 aa16.34■□□□□ 0.21
LMO3-231ENST00000544754 SPINK5Q9NQ38 1064 aaPredicted RBP16.34■□□□□ 0.21
LMO3-231ENST00000544754 ATRNO75882 1429 aa16.34■□□□□ 0.21
LMO3-231ENST00000544754 SLFN5Q08AF3 891 aa16.33■□□□□ 0.2
LMO3-231ENST00000544754 C1orf141Q5JVX7 400 aa16.33■□□□□ 0.2
LMO3-231ENST00000544754 MCM10Q7L590 875 aa16.33■□□□□ 0.2
LMO3-231ENST00000544754 ZCRB1Q8TBF4 217 aaKnown RBP16.33■□□□□ 0.2
LMO3-231ENST00000544754 RTF1Q92541 710 aaKnown RBP16.33■□□□□ 0.2
LMO3-231ENST00000544754 CYP27B1O15528 508 aa16.32■□□□□ 0.2
LMO3-231ENST00000544754 PHKG2P15735 406 aa16.32■□□□□ 0.2
LMO3-231ENST00000544754 IL16Q14005 1332 aa16.32■□□□□ 0.2
LMO3-231ENST00000544754 BARGINQ6ZT62 677 aa16.32■□□□□ 0.2
LMO3-231ENST00000544754 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
LMO3-231ENST00000544754 SIPA1L3O60292 1781 aaPredicted RBP16.31■□□□□ 0.2
LMO3-231ENST00000544754 THSD7AQ9UPZ6 1657 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 TNS2Q63HR2 1409 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 PCDH11XQ9BZA7 1347 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 PCDH11YQ9BZA8 1340 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 E9PSI1 815 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 TRMT2AQ8IZ69 625 aaKnown RBP16.31■□□□□ 0.2
LMO3-231ENST00000544754 IL17REQ8NFR9 667 aa16.31■□□□□ 0.2
LMO3-231ENST00000544754 CDCA7Q9BWT1 371 aaPredicted RBP16.31■□□□□ 0.2
LMO3-231ENST00000544754 CEMIPQ8WUJ3 1361 aa16.3■□□□□ 0.2
LMO3-231ENST00000544754 CALD1Q05682 793 aaKnown RBP16.3■□□□□ 0.2
LMO3-231ENST00000544754 DUSP27Q5VZP5 1158 aa16.3■□□□□ 0.2
LMO3-231ENST00000544754 IFNL2Q8IZJ0 200 aa16.3■□□□□ 0.2
LMO3-231ENST00000544754 TRPC5Q9UL62 973 aaPredicted RBP16.3■□□□□ 0.2
LMO3-231ENST00000544754 KDM6AO15550 1401 aaPredicted RBP16.29■□□□□ 0.2
LMO3-231ENST00000544754 RNMTO43148 476 aaKnown RBP16.29■□□□□ 0.2
LMO3-231ENST00000544754 MPRIPQ6WCQ1 1025 aa16.29■□□□□ 0.2
LMO3-231ENST00000544754 LGR6Q9HBX8 967 aa16.29■□□□□ 0.2
LMO3-231ENST00000544754 TOGARAM1Q9Y4F4 1720 aa16.28■□□□□ 0.2
LMO3-231ENST00000544754 FAM98CQ17RN3 349 aaKnown RBP16.28■□□□□ 0.2
LMO3-231ENST00000544754 GJD4Q96KN9 370 aaPredicted RBP16.28■□□□□ 0.2
LMO3-231ENST00000544754 EXOC5O00471 708 aa16.27■□□□□ 0.2
LMO3-231ENST00000544754 NPM3O75607 178 aaKnown RBP16.27■□□□□ 0.2
LMO3-231ENST00000544754 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
LMO3-231ENST00000544754 DDX54Q8TDD1 881 aaKnown RBP16.27■□□□□ 0.2
LMO3-231ENST00000544754 MYH16Q9H6N6 1097 aa16.27■□□□□ 0.2
LMO3-231ENST00000544754 IFT57Q9NWB7 429 aa16.27■□□□□ 0.2
LMO3-231ENST00000544754 KDM3BQ7LBC6 1761 aa16.27■□□□□ 0.2
LMO3-231ENST00000544754 FANCIQ9NVI1 1328 aa16.26■□□□□ 0.19
LMO3-231ENST00000544754 HSP90AB1P08238 724 aaKnown RBP16.26■□□□□ 0.19
LMO3-231ENST00000544754 GNAI1P63096 354 aa16.26■□□□□ 0.19
LMO3-231ENST00000544754 TSR2Q969E8 191 aaKnown RBP16.26■□□□□ 0.19
LMO3-231ENST00000544754 CFAP44Q96MT7 982 aa16.26■□□□□ 0.19
LMO3-231ENST00000544754 QTRT2Q9H974 415 aaKnown RBP16.26■□□□□ 0.19
LMO3-231ENST00000544754 LAS1LQ9Y4W2 734 aaKnown RBP16.26■□□□□ 0.19
LMO3-231ENST00000544754 MRC1P22897 1456 aa16.26■□□□□ 0.19
LMO3-231ENST00000544754 ITGB4P16144 1822 aa16.25■□□□□ 0.19
LMO3-231ENST00000544754 NKX1-1Q15270 411 aaPredicted RBP16.25■□□□□ 0.19
LMO3-231ENST00000544754 DDB1Q16531 1140 aa16.25■□□□□ 0.19
LMO3-231ENST00000544754 DCAF5Q96JK2 942 aa16.25■□□□□ 0.19
LMO3-231ENST00000544754 CHL1O00533 1208 aa16.24■□□□□ 0.19
LMO3-231ENST00000544754 TEFQ10587 303 aa16.24■□□□□ 0.19
LMO3-231ENST00000544754 ZNF772Q68DY9 489 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms