RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 NEUROD1Q13562 356 aa18.27■□□□□ 0.52
USP28-212ENST00000544750 PUS7Q96PZ0 661 aaKnown RBP18.27■□□□□ 0.52
USP28-212ENST00000544750 TFCP2L1Q9NZI6 479 aa18.27■□□□□ 0.52
USP28-212ENST00000544750 GIGYF1O75420 1035 aaPredicted RBP18.26■□□□□ 0.51
USP28-212ENST00000544750 KLHL34Q8N239 644 aa18.26■□□□□ 0.51
USP28-212ENST00000544750 TERF2IPQ9NYB0 399 aa18.26■□□□□ 0.51
USP28-212ENST00000544750 MEGF6O75095 1541 aa18.26■□□□□ 0.51
USP28-212ENST00000544750 C5P01031 1676 aa18.25■□□□□ 0.51
USP28-212ENST00000544750 MAP3K19Q56UN5 1328 aa18.24■□□□□ 0.51
USP28-212ENST00000544750 YBX3P16989 372 aaKnown RBP eCLIP18.24■□□□□ 0.51
USP28-212ENST00000544750 LTV1Q96GA3 475 aaPredicted RBP18.24■□□□□ 0.51
USP28-212ENST00000544750 CARD11Q9BXL7 1154 aa18.24■□□□□ 0.51
USP28-212ENST00000544750 HOXC9P31274 260 aa18.23■□□□□ 0.51
USP28-212ENST00000544750 SYTL4Q96C24 671 aaPredicted RBP18.23■□□□□ 0.51
USP28-212ENST00000544750 FBLN1P23142 703 aa18.22■□□□□ 0.51
USP28-212ENST00000544750 COL23A1Q86Y22 540 aaPredicted RBP18.22■□□□□ 0.51
USP28-212ENST00000544750 PELP1Q8IZL8 1130 aaKnown RBP18.22■□□□□ 0.51
USP28-212ENST00000544750 ZCRB1Q8TBF4 217 aaKnown RBP18.22■□□□□ 0.51
USP28-212ENST00000544750 CCNL1Q9UK58 526 aaPredicted RBP18.21■□□□□ 0.51
USP28-212ENST00000544750 ITGB4P16144 1822 aa18.21■□□□□ 0.51
USP28-212ENST00000544750 GRIN3BO60391 1043 aa18.2■□□□□ 0.5
USP28-212ENST00000544750 TOGARAM1Q9Y4F4 1720 aa18.19■□□□□ 0.5
USP28-212ENST00000544750 RTL1A6NKG5 1358 aa18.18■□□□□ 0.5
USP28-212ENST00000544750 UBR3Q6ZT12 1888 aa18.18■□□□□ 0.5
USP28-212ENST00000544750 IFFO2Q5TF58 517 aa18.18■□□□□ 0.5
USP28-212ENST00000544750 COG3Q96JB2 828 aa18.18■□□□□ 0.5
USP28-212ENST00000544750 TESK2Q96S53 571 aa18.18■□□□□ 0.5
USP28-212ENST00000544750 USP47Q96K76 1375 aa18.17■□□□□ 0.5
USP28-212ENST00000544750 AMPHP49418 695 aa18.17■□□□□ 0.5
USP28-212ENST00000544750 NBPF6Q5VWK0 638 aa18.17■□□□□ 0.5
USP28-212ENST00000544750 NBPF4Q96M43 638 aa18.17■□□□□ 0.5
USP28-212ENST00000544750 ATP10DQ9P241 1426 aa18.16■□□□□ 0.5
USP28-212ENST00000544750 CGNL1Q0VF96 1302 aa18.16■□□□□ 0.5
USP28-212ENST00000544750 ADCY9O60503 1353 aa18.16■□□□□ 0.5
USP28-212ENST00000544750 C4BP0C0L5 1744 aa18.15■□□□□ 0.5
USP28-212ENST00000544750 MAP2P11137 1827 aaKnown RBP18.15■□□□□ 0.5
USP28-212ENST00000544750 MSL1Q68DK7 614 aa18.14■□□□□ 0.49
USP28-212ENST00000544750 CD2APQ9Y5K6 639 aa18.14■□□□□ 0.49
USP28-212ENST00000544750 PKD1L3Q7Z443 1732 aa18.14■□□□□ 0.49
USP28-212ENST00000544750 RRS1Q15050 365 aaKnown RBP18.13■□□□□ 0.49
USP28-212ENST00000544750 KIF20BQ96Q89 1820 aa18.13■□□□□ 0.49
USP28-212ENST00000544750 MSH5O43196 834 aa18.12■□□□□ 0.49
USP28-212ENST00000544750 USHBP1Q8N6Y0 703 aa18.12■□□□□ 0.49
USP28-212ENST00000544750 FYB1O15117 783 aa18.11■□□□□ 0.49
USP28-212ENST00000544750 PALLDQ8WX93 1383 aa18.11■□□□□ 0.49
USP28-212ENST00000544750 ST20-MTHFSA0A0A6YYL1 179 aa18.1■□□□□ 0.49
USP28-212ENST00000544750 AMIGO3Q86WK7 504 aa18.1■□□□□ 0.49
USP28-212ENST00000544750 FLAD1Q8NFF5 587 aa18.1■□□□□ 0.49
USP28-212ENST00000544750 INSRP06213 1382 aa18.09■□□□□ 0.49
USP28-212ENST00000544750 PCDH11XQ9BZA7 1347 aa18.09■□□□□ 0.49
USP28-212ENST00000544750 PCDH11YQ9BZA8 1340 aa18.09■□□□□ 0.49
USP28-212ENST00000544750 RAPGEF4Q8WZA2 1011 aa18.09■□□□□ 0.49
USP28-212ENST00000544750 CYP27B1O15528 508 aa18.08■□□□□ 0.48
USP28-212ENST00000544750 TATP17735 454 aaPredicted RBP18.08■□□□□ 0.48
USP28-212ENST00000544750 HMGB2P26583 209 aaKnown RBP18.08■□□□□ 0.48
USP28-212ENST00000544750 SMG6Q86US8 1419 aaKnown RBP18.07■□□□□ 0.48
USP28-212ENST00000544750 KIF13BQ9NQT8 1826 aa18.07■□□□□ 0.48
USP28-212ENST00000544750 HSP90AB2PQ58FF8 381 aa18.07■□□□□ 0.48
USP28-212ENST00000544750 GGNBP2Q9H3C7 697 aa18.07■□□□□ 0.48
USP28-212ENST00000544750 NCAPD2Q15021 1401 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 KIAA1551Q9HCM1 1747 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 ANKRD26Q9UPS8 1709 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 KIF24Q5T7B8 1368 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 TONSLQ96HA7 1378 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 SLC24A1O60721 1099 aa18.06■□□□□ 0.48
USP28-212ENST00000544750 GPBP1L1Q9HC44 474 aaPredicted RBP18.06■□□□□ 0.48
USP28-212ENST00000544750 FLT4P35916 1363 aa18.05■□□□□ 0.48
USP28-212ENST00000544750 CICQ96RK0 1608 aaPredicted RBP18.05■□□□□ 0.48
USP28-212ENST00000544750 MPRIPQ6WCQ1 1025 aa18.05■□□□□ 0.48
USP28-212ENST00000544750 HSPA6P17066 643 aa18.04■□□□□ 0.48
USP28-212ENST00000544750 IGSF1Q8N6C5 1336 aa18.03■□□□□ 0.48
USP28-212ENST00000544750 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
USP28-212ENST00000544750 SMIM5Q71RC9 77 aa18.03■□□□□ 0.48
USP28-212ENST00000544750 SMARCC1Q92922 1105 aaPredicted RBP18.03■□□□□ 0.48
USP28-212ENST00000544750 PIGBQ92521 554 aa18.02■□□□□ 0.48
USP28-212ENST00000544750 NSD3Q9BZ95 1437 aa18.02■□□□□ 0.48
USP28-212ENST00000544750 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.01■□□□□ 0.47
USP28-212ENST00000544750 AK7Q96M32 723 aa18.01■□□□□ 0.47
USP28-212ENST00000544750 N4BP2Q86UW6 1770 aaPredicted RBP18.01■□□□□ 0.47
USP28-212ENST00000544750 SSFA2P28290 1259 aa18■□□□□ 0.47
USP28-212ENST00000544750 BRCA1P38398 1863 aaKnown RBP18■□□□□ 0.47
USP28-212ENST00000544750 KIF3CO14782 793 aa17.99■□□□□ 0.47
USP28-212ENST00000544750 LINC00116Q8NCU8 138 aa17.99■□□□□ 0.47
USP28-212ENST00000544750 ZNF526Q8TF50 670 aaPredicted RBP17.99■□□□□ 0.47
USP28-212ENST00000544750 PHF14O94880 888 aa17.98■□□□□ 0.47
USP28-212ENST00000544750 EMILIN1Q9Y6C2 1016 aa17.98■□□□□ 0.47
USP28-212ENST00000544750 ZNF831Q5JPB2 1677 aa17.98■□□□□ 0.47
USP28-212ENST00000544750 LOC102724428A0A0B4J2F2 783 aa17.97■□□□□ 0.47
USP28-212ENST00000544750 SIK1P57059 783 aa17.97■□□□□ 0.47
USP28-212ENST00000544750 WWC3Q9ULE0 1092 aa17.97■□□□□ 0.47
USP28-212ENST00000544750 COL5A3P25940 1745 aaPredicted RBP17.96■□□□□ 0.47
USP28-212ENST00000544750 TMF1P82094 1093 aa17.96■□□□□ 0.47
USP28-212ENST00000544750 ITPK1Q13572 414 aa17.96■□□□□ 0.47
USP28-212ENST00000544750 PXDNLA1KZ92 1463 aa17.95■□□□□ 0.46
USP28-212ENST00000544750 CARD14Q9BXL6 1004 aa17.95■□□□□ 0.46
USP28-212ENST00000544750 MYH14Q7Z406 1995 aaKnown RBP17.94■□□□□ 0.46
USP28-212ENST00000544750 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.94■□□□□ 0.46
USP28-212ENST00000544750 ASAP1Q9ULH1 1129 aa17.94■□□□□ 0.46
USP28-212ENST00000544750 ARFGEF1Q9Y6D6 1849 aa17.93■□□□□ 0.46
USP28-212ENST00000544750 SPG7Q9UQ90 795 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms