RNA–Protein interactions for RNA: ENST00000543881.5

GABPB1-206, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 2 BASIC

Gene GABPB1, Length 1,450 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-206ENST00000543881 TERF2IPQ9NYB0 399 aa16.71■□□□□ 0.27
GABPB1-206ENST00000543881 SHANK3Q9BYB0 1731 aa16.7■□□□□ 0.26
GABPB1-206ENST00000543881 GOLGB1Q14789 3259 aaKnown RBP16.7■□□□□ 0.26
GABPB1-206ENST00000543881 PRIM1P49642 420 aaKnown RBP16.69■□□□□ 0.26
GABPB1-206ENST00000543881 IP6K1Q92551 441 aa16.69■□□□□ 0.26
GABPB1-206ENST00000543881 LTV1Q96GA3 475 aaPredicted RBP16.69■□□□□ 0.26
GABPB1-206ENST00000543881 IFFO2Q5TF58 517 aa16.68■□□□□ 0.26
GABPB1-206ENST00000543881 LY75O60449 1722 aa16.68■□□□□ 0.26
GABPB1-206ENST00000543881 ANKRD36BQ8N2N9 1353 aa16.68■□□□□ 0.26
GABPB1-206ENST00000543881 FAM208AQ9UK61 1670 aaKnown RBP16.68■□□□□ 0.26
GABPB1-206ENST00000543881 DOT1LQ8TEK3 1739 aa16.68■□□□□ 0.26
GABPB1-206ENST00000543881 YBX3P16989 372 aaKnown RBP eCLIP16.67■□□□□ 0.261e-6■□□□□ 11.3
GABPB1-206ENST00000543881 USP47Q96K76 1375 aa16.66■□□□□ 0.26
GABPB1-206ENST00000543881 GRIN3BO60391 1043 aa16.66■□□□□ 0.26
GABPB1-206ENST00000543881 NSD2O96028 1365 aa16.66■□□□□ 0.26
GABPB1-206ENST00000543881 MSH5O43196 834 aa16.65■□□□□ 0.26
GABPB1-206ENST00000543881 CCNL1Q9UK58 526 aaPredicted RBP16.65■□□□□ 0.26
GABPB1-206ENST00000543881 SLC24A1O60721 1099 aa16.64■□□□□ 0.25
GABPB1-206ENST00000543881 COL23A1Q86Y22 540 aaPredicted RBP16.63■□□□□ 0.25
GABPB1-206ENST00000543881 ZCRB1Q8TBF4 217 aaKnown RBP16.63■□□□□ 0.25
GABPB1-206ENST00000543881 RGPD2P0DJD1 1756 aa16.63■□□□□ 0.25
GABPB1-206ENST00000543881 CEP350Q5VT06 3117 aa16.62■□□□□ 0.25
GABPB1-206ENST00000543881 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
GABPB1-206ENST00000543881 FBLN1P23142 703 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 HOXC9P31274 260 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 TMF1P82094 1093 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 MSL1Q68DK7 614 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 PCGF6Q9BYE7 350 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 MEGF6O75095 1541 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 AMPHP49418 695 aa16.61■□□□□ 0.25
GABPB1-206ENST00000543881 ATP10DQ9P241 1426 aa16.6■□□□□ 0.25
GABPB1-206ENST00000543881 COG3Q96JB2 828 aa16.6■□□□□ 0.25
GABPB1-206ENST00000543881 TIMELESSQ9UNS1 1208 aa16.59■□□□□ 0.25
GABPB1-206ENST00000543881 FYB1O15117 783 aa16.57■□□□□ 0.24
GABPB1-206ENST00000543881 CD2APQ9Y5K6 639 aa16.57■□□□□ 0.24
GABPB1-206ENST00000543881 CLSPNQ9HAW4 1339 aa16.57■□□□□ 0.24
GABPB1-206ENST00000543881 C5P01031 1676 aa16.57■□□□□ 0.24
GABPB1-206ENST00000543881 GGNBP2Q9H3C7 697 aa16.56■□□□□ 0.24
GABPB1-206ENST00000543881 GPBP1L1Q9HC44 474 aaPredicted RBP16.56■□□□□ 0.24
GABPB1-206ENST00000543881 NBPF6Q5VWK0 638 aa16.55■□□□□ 0.24
GABPB1-206ENST00000543881 NBPF4Q96M43 638 aa16.55■□□□□ 0.24
GABPB1-206ENST00000543881 CGNL1Q0VF96 1302 aa16.55■□□□□ 0.24
GABPB1-206ENST00000543881 USHBP1Q8N6Y0 703 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 FLAD1Q8NFF5 587 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 TAF1LQ8IZX4 1826 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 RRS1Q15050 365 aaKnown RBP16.54■□□□□ 0.24
GABPB1-206ENST00000543881 CDCA8Q53HL2 280 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 RAPGEF4Q8WZA2 1011 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 CARD14Q9BXL6 1004 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 RTL1A6NKG5 1358 aa16.54■□□□□ 0.24
GABPB1-206ENST00000543881 ADCY9O60503 1353 aa16.53■□□□□ 0.24
GABPB1-206ENST00000543881 PALLDQ8WX93 1383 aa16.53■□□□□ 0.24
GABPB1-206ENST00000543881 HMGB2P26583 209 aaKnown RBP16.53■□□□□ 0.24
GABPB1-206ENST00000543881 ZNF526Q8TF50 670 aaPredicted RBP16.53■□□□□ 0.24
GABPB1-206ENST00000543881 HSPA6P17066 643 aa16.52■□□□□ 0.23
GABPB1-206ENST00000543881 TATP17735 454 aaPredicted RBP16.52■□□□□ 0.23
GABPB1-206ENST00000543881 SMG6Q86US8 1419 aaKnown RBP16.5■□□□□ 0.23
GABPB1-206ENST00000543881 PCDH11XQ9BZA7 1347 aa16.5■□□□□ 0.23
GABPB1-206ENST00000543881 PCDH11YQ9BZA8 1340 aa16.5■□□□□ 0.23
GABPB1-206ENST00000543881 MPRIPQ6WCQ1 1025 aa16.5■□□□□ 0.23
GABPB1-206ENST00000543881 C4BP0C0L5 1744 aa16.5■□□□□ 0.23
GABPB1-206ENST00000543881 AK7Q96M32 723 aa16.49■□□□□ 0.23
GABPB1-206ENST00000543881 KIF20BQ96Q89 1820 aa16.49■□□□□ 0.23
GABPB1-206ENST00000543881 IGSF1Q8N6C5 1336 aa16.49■□□□□ 0.23
GABPB1-206ENST00000543881 AMIGO3Q86WK7 504 aa16.48■□□□□ 0.23
GABPB1-206ENST00000543881 WWC3Q9ULE0 1092 aa16.48■□□□□ 0.23
GABPB1-206ENST00000543881 NSD3Q9BZ95 1437 aa16.48■□□□□ 0.23
GABPB1-206ENST00000543881 SMARCC1Q92922 1105 aaPredicted RBP16.48■□□□□ 0.23
GABPB1-206ENST00000543881 ITGB4P16144 1822 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 TOGARAM1Q9Y4F4 1720 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 UBR3Q6ZT12 1888 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 CYP27B1O15528 508 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 PHF14O94880 888 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 HSP90AB2PQ58FF8 381 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 SMIM5Q71RC9 77 aa16.47■□□□□ 0.23
GABPB1-206ENST00000543881 INSRP06213 1382 aa16.46■□□□□ 0.23
GABPB1-206ENST00000543881 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
GABPB1-206ENST00000543881 CCER1Q8TC90 406 aaPredicted RBP16.44■□□□□ 0.22
GABPB1-206ENST00000543881 PIGBQ92521 554 aa16.44■□□□□ 0.22
GABPB1-206ENST00000543881 EMILIN1Q9Y6C2 1016 aa16.43■□□□□ 0.22
GABPB1-206ENST00000543881 FLT4P35916 1363 aa16.43■□□□□ 0.22
GABPB1-206ENST00000543881 KIF3CO14782 793 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 HSPA5P11021 654 aaKnown RBP16.42■□□□□ 0.22
GABPB1-206ENST00000543881 SSFA2P28290 1259 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 PKD1L3Q7Z443 1732 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 KIF24Q5T7B8 1368 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 LINC00116Q8NCU8 138 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 POLR3GLQ9BT43 218 aa16.42■□□□□ 0.22
GABPB1-206ENST00000543881 MAP2P11137 1827 aaKnown RBP16.41■□□□□ 0.22
GABPB1-206ENST00000543881 LOC102724428A0A0B4J2F2 783 aa16.41■□□□□ 0.22
GABPB1-206ENST00000543881 SIK1P57059 783 aa16.41■□□□□ 0.22
GABPB1-206ENST00000543881 EIF4G2P78344 907 aaKnown RBP eCLIP16.41■□□□□ 0.22
GABPB1-206ENST00000543881 NKX1-1Q15270 411 aaPredicted RBP16.4■□□□□ 0.22
GABPB1-206ENST00000543881 CICQ96RK0 1608 aaPredicted RBP16.39■□□□□ 0.21
GABPB1-206ENST00000543881 GNPATO15228 680 aa16.38■□□□□ 0.21
GABPB1-206ENST00000543881 SPG7Q9UQ90 795 aa16.38■□□□□ 0.21
GABPB1-206ENST00000543881 ANKRD26Q9UPS8 1709 aa16.38■□□□□ 0.21
GABPB1-206ENST00000543881 PPM1GO15355 546 aaPredicted RBP16.37■□□□□ 0.21
GABPB1-206ENST00000543881 MMP10P09238 476 aa16.37■□□□□ 0.21
GABPB1-206ENST00000543881 APLP1P51693 650 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms