RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	AMOT	Q4VCS5	1084 aa		13.45	□□□□□ -0.26
CPSF7-221	ENST00000543545	ONECUT3	O60422	494 aa	Predicted RBP	13.44	□□□□□ -0.26
CPSF7-221	ENST00000543545	RUNDC1	Q96C34	613 aa		13.44	□□□□□ -0.26
CPSF7-221	ENST00000543545	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.43	□□□□□ -0.26
CPSF7-221	ENST00000543545	GAS2L2	Q8NHY3	880 aa		13.43	□□□□□ -0.26
CPSF7-221	ENST00000543545	PHACTR3	Q96KR7	559 aa		13.43	□□□□□ -0.26
CPSF7-221	ENST00000543545	NWD2	Q9ULI1	1742 aa		13.43	□□□□□ -0.26
CPSF7-221	ENST00000543545	KDR	P35968	1356 aa		13.43	□□□□□ -0.26
CPSF7-221	ENST00000543545	MTHFSD	Q2M296	383 aa	Known RBP	13.42	□□□□□ -0.26
CPSF7-221	ENST00000543545	C1orf141	Q5JVX7	400 aa		13.42	□□□□□ -0.26
CPSF7-221	ENST00000543545	PLEKHF1	Q96S99	279 aa		13.42	□□□□□ -0.26
CPSF7-221	ENST00000543545	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.42	□□□□□ -0.26	4e-9	■■■□□ 15.2
CPSF7-221	ENST00000543545	SENP3-EIF4A1	A0A087X0R7	540 aa		13.41	□□□□□ -0.26
CPSF7-221	ENST00000543545	NEUROD2	Q15784	382 aa		13.41	□□□□□ -0.26
CPSF7-221	ENST00000543545	MEGF6	O75095	1541 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	NRAP	Q86VF7	1730 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	APAF1	O14727	1248 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	KRT27	Q7Z3Y8	459 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	IFNL2	Q8IZJ0	200 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	RRP7A	Q9Y3A4	280 aa	Known RBP	13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	RGPD5	Q99666	1765 aa		13.4	□□□□□ -0.26
CPSF7-221	ENST00000543545	PCDH11X	Q9BZA7	1347 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	PCDH11Y	Q9BZA8	1340 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	OVOS2	A0A0G2JMS6	1433 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	DISP2	A7MBM2	1401 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	NCAPD2	Q15021	1401 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	NFE2L2	Q16236	605 aa		13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	RTF1	Q92541	710 aa	Known RBP	13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	SALL2	Q9Y467	1007 aa	Predicted RBP	13.39	□□□□□ -0.27
CPSF7-221	ENST00000543545	CYP27B1	O15528	508 aa		13.38	□□□□□ -0.27
CPSF7-221	ENST00000543545	PHKG2	P15735	406 aa		13.38	□□□□□ -0.27
CPSF7-221	ENST00000543545	RIPK4	P57078	832 aa		13.38	□□□□□ -0.27
CPSF7-221	ENST00000543545	AKAP4	Q5JQC9	854 aa		13.38	□□□□□ -0.27
CPSF7-221	ENST00000543545	MARCH10	Q8NA82	808 aa	Predicted RBP	13.38	□□□□□ -0.27
CPSF7-221	ENST00000543545	GLI3	P10071	1580 aa		13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	GNAT3	A8MTJ3	354 aa		13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	HSP90AB1	P08238	724 aa	Known RBP	13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	TMPO	P42166	694 aa	Known RBP	13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	FAM182B	Q5T319	152 aa		13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	MPRIP	Q6WCQ1	1025 aa		13.37	□□□□□ -0.27
CPSF7-221	ENST00000543545	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.36	□□□□□ -0.27
CPSF7-221	ENST00000543545	LMOD3	Q0VAK6	560 aa		13.35	□□□□□ -0.27
CPSF7-221	ENST00000543545	RGS12	O14924	1447 aa		13.35	□□□□□ -0.27
CPSF7-221	ENST00000543545	TNS2	Q63HR2	1409 aa		13.35	□□□□□ -0.27
CPSF7-221	ENST00000543545	FAM208A	Q9UK61	1670 aa	Known RBP	13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	PLEKHG2	Q9H7P9	1386 aa		13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	FAM196A	Q6ZSG2	479 aa		13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	SYTL4	Q96C24	671 aa	Predicted RBP	13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	ACSBG1	Q96GR2	724 aa		13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	DCAF5	Q96JK2	942 aa		13.34	□□□□□ -0.27
CPSF7-221	ENST00000543545	MAP3K5	Q99683	1374 aa		13.33	□□□□□ -0.27
CPSF7-221	ENST00000543545	HTATSF1	O43719	755 aa	Known RBP	13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	CABP4	P57796	275 aa		13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	DCTN1	Q14203	1278 aa		13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	MCM10	Q7L590	875 aa		13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	LGR6	Q9HBX8	967 aa		13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	RGPD1	P0DJD0	1748 aa		13.33	□□□□□ -0.28
CPSF7-221	ENST00000543545	RGPD2	P0DJD1	1756 aa		13.32	□□□□□ -0.28
CPSF7-221	ENST00000543545	RNMT	O43148	476 aa	Known RBP	13.32	□□□□□ -0.28
CPSF7-221	ENST00000543545	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
CPSF7-221	ENST00000543545	TEF	Q10587	303 aa		13.32	□□□□□ -0.28
CPSF7-221	ENST00000543545	NKX1-1	Q15270	411 aa	Predicted RBP	13.32	□□□□□ -0.28
CPSF7-221	ENST00000543545	PRIM1	P49642	420 aa	Known RBP	13.31	□□□□□ -0.28
CPSF7-221	ENST00000543545	IL17RE	Q8NFR9	667 aa		13.31	□□□□□ -0.28
CPSF7-221	ENST00000543545	THUMPD2	Q9BTF0	503 aa	Known RBP	13.31	□□□□□ -0.28
CPSF7-221	ENST00000543545	ERVV-2	B6SEH9	535 aa		13.3	□□□□□ -0.28
CPSF7-221	ENST00000543545	YTHDC1	Q96MU7	727 aa	Known RBP	13.3	□□□□□ -0.28
CPSF7-221	ENST00000543545	TMOD3	Q9NYL9	352 aa		13.3	□□□□□ -0.28
CPSF7-221	ENST00000543545	TRIM35	Q9UPQ4	493 aa		13.3	□□□□□ -0.28
CPSF7-221	ENST00000543545	TRIM37	O94972	964 aa		13.29	□□□□□ -0.28
CPSF7-221	ENST00000543545	NGEF	Q8N5V2	710 aa		13.29	□□□□□ -0.28
CPSF7-221	ENST00000543545	NFATC2IP	Q8NCF5	419 aa		13.29	□□□□□ -0.28
CPSF7-221	ENST00000543545	LAS1L	Q9Y4W2	734 aa	Known RBP	13.29	□□□□□ -0.28
CPSF7-221	ENST00000543545	KCNQ2	O43526	872 aa		13.28	□□□□□ -0.28
CPSF7-221	ENST00000543545	CALD1	Q05682	793 aa	Known RBP	13.28	□□□□□ -0.28
CPSF7-221	ENST00000543545	WWC1	Q8IX03	1113 aa		13.28	□□□□□ -0.28
CPSF7-221	ENST00000543545	SLC52A2	Q9HAB3	445 aa		13.28	□□□□□ -0.28
CPSF7-221	ENST00000543545	THSD7A	Q9UPZ6	1657 aa		13.28	□□□□□ -0.28
CPSF7-221	ENST00000543545	TAF7	Q15545	349 aa	Predicted RBP	13.27	□□□□□ -0.29
CPSF7-221	ENST00000543545	CCDC27	Q2M243	656 aa		13.27	□□□□□ -0.29
CPSF7-221	ENST00000543545	PIGB	Q92521	554 aa		13.27	□□□□□ -0.29
CPSF7-221	ENST00000543545	BTBD11	A6QL63	1104 aa		13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	SF3B2	Q13435	895 aa	Known RBP	13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	NCBP3	Q53F19	620 aa	Known RBP	13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	MIS18A	Q9NYP9	233 aa		13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	PARP4	Q9UKK3	1724 aa	Known RBP	13.26	□□□□□ -0.29
CPSF7-221	ENST00000543545	KDM6A	O15550	1401 aa	Predicted RBP	13.25	□□□□□ -0.29
CPSF7-221	ENST00000543545	ILDR2	Q71H61	639 aa		13.25	□□□□□ -0.29
CPSF7-221	ENST00000543545	PTF1A	Q7RTS3	328 aa		13.25	□□□□□ -0.29
CPSF7-221	ENST00000543545	WDR63	Q8IWG1	891 aa		13.25	□□□□□ -0.29
CPSF7-221	ENST00000543545	LRRC37A3	O60309	1634 aa		13.24	□□□□□ -0.29
CPSF7-221	ENST00000543545	APBA3	O96018	575 aa		13.24	□□□□□ -0.29
CPSF7-221	ENST00000543545	TTC5	Q8N0Z6	440 aa		13.24	□□□□□ -0.29
CPSF7-221	ENST00000543545	TSPYL4	Q9UJ04	414 aa		13.24	□□□□□ -0.29
CPSF7-221	ENST00000543545	BCL9	O00512	1426 aa		13.23	□□□□□ -0.29
CPSF7-221	ENST00000543545	CEMIP	Q8WUJ3	1361 aa		13.23	□□□□□ -0.29
CPSF7-221	ENST00000543545	GNAI1	P63096	354 aa		13.23	□□□□□ -0.29
CPSF7-221	ENST00000543545	SLC39A6	Q13433	755 aa		13.23	□□□□□ -0.29
CPSF7-221	ENST00000543545	GOLGA2	Q08379	1002 aa		13.22	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms