RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 LBX1P52954 281 aa11.64□□□□□ -0.55
CHMP4A-209ENST00000542700 CCNL1Q9UK58 526 aaPredicted RBP11.64□□□□□ -0.55
CHMP4A-209ENST00000542700 PKD1L3Q7Z443 1732 aa11.63□□□□□ -0.55
CHMP4A-209ENST00000542700 CPSF1Q10570 1443 aaKnown RBP11.63□□□□□ -0.55
CHMP4A-209ENST00000542700 SLIT3O75094 1523 aa11.63□□□□□ -0.55
CHMP4A-209ENST00000542700 SYTL4Q96C24 671 aaPredicted RBP11.62□□□□□ -0.55
CHMP4A-209ENST00000542700 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
CHMP4A-209ENST00000542700 LY75O60449 1722 aa11.61□□□□□ -0.55
CHMP4A-209ENST00000542700 NLRP6P59044 892 aa11.61□□□□□ -0.55
CHMP4A-209ENST00000542700 CFAP44Q96MT7 982 aa11.61□□□□□ -0.55
CHMP4A-209ENST00000542700 RGPD5Q99666 1765 aa11.61□□□□□ -0.55
CHMP4A-209ENST00000542700 ADGRB1O14514 1584 aa11.6□□□□□ -0.55
CHMP4A-209ENST00000542700 SMIM5Q71RC9 77 aa11.59□□□□□ -0.55
CHMP4A-209ENST00000542700 RNF181Q9P0P0 153 aa11.59□□□□□ -0.55
CHMP4A-209ENST00000542700 SOX12O15370 315 aa11.58□□□□□ -0.56
CHMP4A-209ENST00000542700 IL2RBP14784 551 aa11.58□□□□□ -0.56
CHMP4A-209ENST00000542700 USP54Q70EL1 1684 aa11.58□□□□□ -0.56
CHMP4A-209ENST00000542700 QRICH2Q9H0J4 1663 aa11.58□□□□□ -0.56
CHMP4A-209ENST00000542700 PLEKHG3A1L390 1219 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 FCHSD2O94868 740 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 HSPA8P11142 646 aaKnown RBP11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 PRIM1P49642 420 aaKnown RBP11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 FLAD1Q8NFF5 587 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 CDK19Q9BWU1 502 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 CREBZFQ9NS37 354 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 CCDC61Q9Y6R9 512 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 ERBB3P21860 1342 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 PDE4DIPQ5VU43 2346 aa11.57□□□□□ -0.56
CHMP4A-209ENST00000542700 N4BP2Q86UW6 1770 aaPredicted RBP11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 NSD2O96028 1365 aa11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 A0A0G2JLW4 131 aa11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 ARHGEF25Q86VW2 580 aa11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 DDX54Q8TDD1 881 aaKnown RBP11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 KIAA1551Q9HCM1 1747 aa11.56□□□□□ -0.56
CHMP4A-209ENST00000542700 C5P01031 1676 aa11.55□□□□□ -0.56
CHMP4A-209ENST00000542700 CNTNAP1P78357 1384 aa11.55□□□□□ -0.56
CHMP4A-209ENST00000542700 DOT1LQ8TEK3 1739 aa11.55□□□□□ -0.56
CHMP4A-209ENST00000542700 PHF14O94880 888 aa11.55□□□□□ -0.56
CHMP4A-209ENST00000542700 NLRP2Q9NX02 1062 aa11.55□□□□□ -0.56
CHMP4A-209ENST00000542700 ANKRD36BQ8N2N9 1353 aa11.54□□□□□ -0.56
CHMP4A-209ENST00000542700 WBP1LQ9NX94 342 aa11.54□□□□□ -0.56
CHMP4A-209ENST00000542700 USP47Q96K76 1375 aa11.54□□□□□ -0.56
CHMP4A-209ENST00000542700 LOC105371045A0A1W2PR82 267 aa11.53□□□□□ -0.56
CHMP4A-209ENST00000542700 VEGFAP15692 232 aaPredicted RBP11.53□□□□□ -0.56
CHMP4A-209ENST00000542700 AMIGO3Q86WK7 504 aa11.53□□□□□ -0.56
CHMP4A-209ENST00000542700 VEGFBP49765 207 aa11.52□□□□□ -0.57
CHMP4A-209ENST00000542700 TGFB2P61812 414 aa11.52□□□□□ -0.57
CHMP4A-209ENST00000542700 TOGARAM1Q9Y4F4 1720 aa11.52□□□□□ -0.57
CHMP4A-209ENST00000542700 DPEP1P16444 411 aa11.51□□□□□ -0.57
CHMP4A-209ENST00000542700 AK7Q96M32 723 aa11.51□□□□□ -0.57
CHMP4A-209ENST00000542700 KIF13BQ9NQT8 1826 aa11.51□□□□□ -0.57
CHMP4A-209ENST00000542700 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.5□□□□□ -0.57
CHMP4A-209ENST00000542700 MMP10P09238 476 aa11.5□□□□□ -0.57
CHMP4A-209ENST00000542700 PRPF38BQ5VTL8 546 aaKnown RBP11.5□□□□□ -0.57
CHMP4A-209ENST00000542700 TNRC18O15417 2968 aaPredicted RBP11.49□□□□□ -0.57
CHMP4A-209ENST00000542700 KCNH5Q8NCM2 988 aa11.49□□□□□ -0.57
CHMP4A-209ENST00000542700 C4BP0C0L5 1744 aa11.49□□□□□ -0.57
CHMP4A-209ENST00000542700 BRCA1P38398 1863 aaKnown RBP11.48□□□□□ -0.57
CHMP4A-209ENST00000542700 TAF1LQ8IZX4 1826 aa11.47□□□□□ -0.57
CHMP4A-209ENST00000542700 ARFGEF1Q9Y6D6 1849 aa11.47□□□□□ -0.57
CHMP4A-209ENST00000542700 NFAT5O94916 1531 aa11.47□□□□□ -0.57
CHMP4A-209ENST00000542700 GLTPD2A6NH11 291 aa11.47□□□□□ -0.57
CHMP4A-209ENST00000542700 DCAF5Q96JK2 942 aa11.47□□□□□ -0.57
CHMP4A-209ENST00000542700 NSD3Q9BZ95 1437 aa11.46□□□□□ -0.57
CHMP4A-209ENST00000542700 UBR3Q6ZT12 1888 aa11.46□□□□□ -0.58
CHMP4A-209ENST00000542700 VIRMAQ69YN4 1812 aaKnown RBP11.46□□□□□ -0.58
CHMP4A-209ENST00000542700 PALLDQ8WX93 1383 aa11.45□□□□□ -0.58
CHMP4A-209ENST00000542700 ZC3H4Q9UPT8 1303 aaKnown RBP11.45□□□□□ -0.58
CHMP4A-209ENST00000542700 SRPK2P78362 688 aaKnown RBP11.45□□□□□ -0.58
CHMP4A-209ENST00000542700 RASSF7Q02833 373 aa11.45□□□□□ -0.58
CHMP4A-209ENST00000542700 CHADLQ6NUI6 762 aa11.45□□□□□ -0.58
CHMP4A-209ENST00000542700 SSFA2P28290 1259 aa11.44□□□□□ -0.58
CHMP4A-209ENST00000542700 ANKRD24Q8TF21 1146 aa11.44□□□□□ -0.58
CHMP4A-209ENST00000542700 MCOLN1Q9GZU1 580 aa11.44□□□□□ -0.58
CHMP4A-209ENST00000542700 SBF1O95248 1867 aa11.44□□□□□ -0.58
CHMP4A-209ENST00000542700 POTECB2RU33 542 aa11.43□□□□□ -0.58
CHMP4A-209ENST00000542700 KCNA3P22001 575 aa11.43□□□□□ -0.58
CHMP4A-209ENST00000542700 MAP2K1Q02750 393 aaPredicted RBP11.43□□□□□ -0.58
CHMP4A-209ENST00000542700 DALRD3Q5D0E6 543 aaKnown RBP11.43□□□□□ -0.58
CHMP4A-209ENST00000542700 PIM2Q9P1W9 311 aa11.43□□□□□ -0.58
CHMP4A-209ENST00000542700 POTEIP0CG38 1075 aa11.42□□□□□ -0.58
CHMP4A-209ENST00000542700 POTEJP0CG39 1038 aa11.42□□□□□ -0.58
CHMP4A-209ENST00000542700 HMGB2P26583 209 aaKnown RBP11.42□□□□□ -0.58
CHMP4A-209ENST00000542700 CABP2Q9NPB3 220 aa11.42□□□□□ -0.58
CHMP4A-209ENST00000542700 CCDC87Q9NVE4 849 aa11.42□□□□□ -0.58
CHMP4A-209ENST00000542700 CABP1Q9NZU7 370 aa11.41□□□□□ -0.58
CHMP4A-209ENST00000542700 KDM6AO15550 1401 aaPredicted RBP11.41□□□□□ -0.58
CHMP4A-209ENST00000542700 TIAM2Q8IVF5 1701 aa11.4□□□□□ -0.58
CHMP4A-209ENST00000542700 TMEM88BA6NKF7 163 aa11.4□□□□□ -0.58
CHMP4A-209ENST00000542700 SOX10P56693 466 aa11.4□□□□□ -0.58
CHMP4A-209ENST00000542700 TSKSQ9UJT2 592 aa11.4□□□□□ -0.58
CHMP4A-209ENST00000542700 PASKQ96RG2 1323 aa11.39□□□□□ -0.59
CHMP4A-209ENST00000542700 GNPATO15228 680 aa11.39□□□□□ -0.59
CHMP4A-209ENST00000542700 C4AP0C0L4 1744 aa11.39□□□□□ -0.59
CHMP4A-209ENST00000542700 LMNB1P20700 586 aa11.39□□□□□ -0.59
CHMP4A-209ENST00000542700 BEGAINQ9BUH8 593 aa11.39□□□□□ -0.59
CHMP4A-209ENST00000542700 TTC21BQ7Z4L5 1316 aa11.38□□□□□ -0.59
CHMP4A-209ENST00000542700 WDR33Q9C0J8 1336 aaKnown RBP11.38□□□□□ -0.59
CHMP4A-209ENST00000542700 KDM2AQ9Y2K7 1162 aa11.38□□□□□ -0.59
CHMP4A-209ENST00000542700 DGKZQ13574 1117 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms