RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 FKBP8Q14318 412 aa9.57□□□□□ -0.88
VPS53-205ENST00000541903 ZNF530Q6P9A1 599 aaPredicted RBP9.57□□□□□ -0.88
VPS53-205ENST00000541903 TOM1L2Q6ZVM7 507 aa9.57□□□□□ -0.88
VPS53-205ENST00000541903 TSR2Q969E8 191 aaKnown RBP9.57□□□□□ -0.88
VPS53-205ENST00000541903 LAS1LQ9Y4W2 734 aaKnown RBP9.57□□□□□ -0.88
VPS53-205ENST00000541903 RNF123Q5XPI4 1314 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 COL14A1Q05707 1796 aaKnown RBP9.56□□□□□ -0.88
VPS53-205ENST00000541903 JCADQ9P266 1359 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 CT47B1P0C2W7 299 aaPredicted RBP9.56□□□□□ -0.88
VPS53-205ENST00000541903 DCTN1Q14203 1278 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 C1orf141Q5JVX7 400 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 MCM10Q7L590 875 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 CFAP44Q96MT7 982 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 STRN4Q9NRL3 753 aa9.56□□□□□ -0.88
VPS53-205ENST00000541903 RGPD5Q99666 1765 aa9.55□□□□□ -0.88
VPS53-205ENST00000541903 AKAP4Q5JQC9 854 aa9.55□□□□□ -0.88
VPS53-205ENST00000541903 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.55□□□□□ -0.88
VPS53-205ENST00000541903 SPG7Q9UQ90 795 aa9.55□□□□□ -0.88
VPS53-205ENST00000541903 MEGF6O75095 1541 aa9.55□□□□□ -0.88
VPS53-205ENST00000541903 RGPD2P0DJD1 1756 aa9.55□□□□□ -0.88
VPS53-205ENST00000541903 NUTM2BA6NNL0 878 aaPredicted RBP9.54□□□□□ -0.88
VPS53-205ENST00000541903 NUTM2EB1AL46 878 aaPredicted RBP9.54□□□□□ -0.88
VPS53-205ENST00000541903 ADAMTS2O95450 1211 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 ZNF853P0CG23 659 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 IRX6P78412 446 aaPredicted RBP9.54□□□□□ -0.88
VPS53-205ENST00000541903 EXOSC9Q06265 439 aaKnown RBP9.54□□□□□ -0.88
VPS53-205ENST00000541903 NUTM2AQ8IVF1 878 aaPredicted RBP9.54□□□□□ -0.88
VPS53-205ENST00000541903 CARD10Q9BWT7 1032 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 MBIPQ9NS73 344 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 BTG4Q9NY30 223 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.54□□□□□ -0.88
VPS53-205ENST00000541903 CRB1P82279 1406 aa9.54□□□□□ -0.88
VPS53-205ENST00000541903 LRRC37A3O60309 1634 aa9.53□□□□□ -0.88
VPS53-205ENST00000541903 DLG5Q8TDM6 1919 aa9.53□□□□□ -0.88
VPS53-205ENST00000541903 ERICH6BQ5W0A0 696 aa9.53□□□□□ -0.88
VPS53-205ENST00000541903 LARP1Q6PKG0 1096 aaKnown RBP9.53□□□□□ -0.88
VPS53-205ENST00000541903 OVOS2A0A0G2JMS6 1433 aa9.53□□□□□ -0.88
VPS53-205ENST00000541903 CHL1O00533 1208 aa9.52□□□□□ -0.89
VPS53-205ENST00000541903 IL2RBP14784 551 aa9.52□□□□□ -0.89
VPS53-205ENST00000541903 CANXP27824 592 aaKnown RBP9.52□□□□□ -0.89
VPS53-205ENST00000541903 ZNF428Q96B54 188 aa9.52□□□□□ -0.89
VPS53-205ENST00000541903 TSPYL4Q9UJ04 414 aa9.52□□□□□ -0.89
VPS53-205ENST00000541903 SPATA31A6Q5VVP1 1343 aa9.52□□□□□ -0.89
VPS53-205ENST00000541903 CEMIPQ8WUJ3 1361 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 PARP4Q9UKK3 1724 aaKnown RBP9.51□□□□□ -0.89
VPS53-205ENST00000541903 HSP90AB1P08238 724 aaKnown RBP9.51□□□□□ -0.89
VPS53-205ENST00000541903 RARSP54136 660 aaKnown RBP9.51□□□□□ -0.89
VPS53-205ENST00000541903 TEFQ10587 303 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 IL17REQ8NFR9 667 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 FBXO41Q8TF61 875 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 BABAM1Q9NWV8 329 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 PCDH11XQ9BZA7 1347 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 PCDH11YQ9BZA8 1340 aa9.51□□□□□ -0.89
VPS53-205ENST00000541903 RNMTO43148 476 aaKnown RBP9.5□□□□□ -0.89
VPS53-205ENST00000541903 BCAR3O75815 825 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 PHKG2P15735 406 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 HSPA1LP34931 641 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 TAF7Q15545 349 aaPredicted RBP9.5□□□□□ -0.89
VPS53-205ENST00000541903 TWISTNBQ3B726 338 aaPredicted RBP9.5□□□□□ -0.89
VPS53-205ENST00000541903 MPRIPQ6WCQ1 1025 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 IFNL2Q8IZJ0 200 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 ZCRB1Q8TBF4 217 aaKnown RBP9.5□□□□□ -0.89
VPS53-205ENST00000541903 SMC4Q9NTJ3 1288 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 USP35Q9P2H5 1018 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 PLCH1Q4KWH8 1693 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 PKD1L3Q7Z443 1732 aa9.5□□□□□ -0.89
VPS53-205ENST00000541903 SOCS7O14512 581 aa9.49□□□□□ -0.89
VPS53-205ENST00000541903 PLIN1O60240 522 aa9.49□□□□□ -0.89
VPS53-205ENST00000541903 ALDH1L2Q3SY69 923 aa9.49□□□□□ -0.89
VPS53-205ENST00000541903 BCL2L13Q9BXK5 485 aa9.49□□□□□ -0.89
VPS53-205ENST00000541903 SLIT2O94813 1529 aa9.49□□□□□ -0.89
VPS53-205ENST00000541903 VAMP4O75379 141 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 ILDR2Q71H61 639 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 C8orf58Q8NAV2 365 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 FRAT1Q92837 279 aaPredicted RBP9.48□□□□□ -0.89
VPS53-205ENST00000541903 DCAF5Q96JK2 942 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 LGR6Q9HBX8 967 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 MIS18AQ9NYP9 233 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 KIF16BQ96L93 1317 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 NRAPQ86VF7 1730 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 DISP2A7MBM2 1401 aa9.48□□□□□ -0.89
VPS53-205ENST00000541903 KDM6AO15550 1401 aaPredicted RBP9.48□□□□□ -0.89
VPS53-205ENST00000541903 BTBD11A6QL63 1104 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 ELL2O00472 640 aaPredicted RBP9.47□□□□□ -0.89
VPS53-205ENST00000541903 CYP27B1O15528 508 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 MEX3CQ5U5Q3 659 aaKnown RBP9.47□□□□□ -0.89
VPS53-205ENST00000541903 ZKSCAN2Q63HK3 967 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 TSPYL6Q8N831 410 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 SSH1Q8WYL5 1049 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 NGLY1Q96IV0 654 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 C8orf37Q96NL8 207 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 CDCA7Q9BWT1 371 aaPredicted RBP9.47□□□□□ -0.89
VPS53-205ENST00000541903 CCDC9Q9Y3X0 531 aaKnown RBP9.47□□□□□ -0.89
VPS53-205ENST00000541903 SOS1Q07889 1333 aaPredicted RBP9.47□□□□□ -0.89
VPS53-205ENST00000541903 NWD2Q9ULI1 1742 aa9.47□□□□□ -0.89
VPS53-205ENST00000541903 LRP6O75581 1613 aa9.46□□□□□ -0.89
VPS53-205ENST00000541903 ADAMTS7Q9UKP4 1686 aa9.46□□□□□ -0.89
VPS53-205ENST00000541903 IPO8O15397 1037 aaKnown RBP9.46□□□□□ -0.9
VPS53-205ENST00000541903 MS4A1P11836 297 aa9.46□□□□□ -0.9
VPS53-205ENST00000541903 PDE3AQ14432 1141 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms