RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 USHBP1Q8N6Y0 703 aa25.16■■□□□ 1.62
VPS33A-205ENST00000541169 ZCRB1Q8TBF4 217 aaKnown RBP25.16■■□□□ 1.62
VPS33A-205ENST00000541169 SPG7Q9UQ90 795 aa25.15■■□□□ 1.62
VPS33A-205ENST00000541169 MEGF6O75095 1541 aa25.14■■□□□ 1.62
VPS33A-205ENST00000541169 SOCS7O14512 581 aa25.14■■□□□ 1.62
VPS33A-205ENST00000541169 AMOTQ4VCS5 1084 aa25.12■■□□□ 1.61
VPS33A-205ENST00000541169 SULT6B1Q6IMI4 303 aa25.12■■□□□ 1.61
VPS33A-205ENST00000541169 PCDH11XQ9BZA7 1347 aa25.12■■□□□ 1.61
VPS33A-205ENST00000541169 PCDH11YQ9BZA8 1340 aa25.12■■□□□ 1.61
VPS33A-205ENST00000541169 PKD1L3Q7Z443 1732 aa25.11■■□□□ 1.61
VPS33A-205ENST00000541169 U2SURPO15042 1029 aaKnown RBP25.1■■□□□ 1.61
VPS33A-205ENST00000541169 PLEKHO1Q53GL0 409 aaPredicted RBP25.09■■□□□ 1.61
VPS33A-205ENST00000541169 MARCH10Q8NA82 808 aaPredicted RBP25.09■■□□□ 1.61
VPS33A-205ENST00000541169 PNNQ9H307 717 aaKnown RBP25.08■■□□□ 1.61
VPS33A-205ENST00000541169 FCHSD2O94868 740 aa25.07■■□□□ 1.6
VPS33A-205ENST00000541169 DDX54Q8TDD1 881 aaKnown RBP25.06■■□□□ 1.6
VPS33A-205ENST00000541169 U2AF1L5P0DN76 240 aaPredicted RBP25.05■■□□□ 1.6
VPS33A-205ENST00000541169 U2AF1Q01081 240 aaKnown RBP eCLIP25.05■■□□□ 1.6
VPS33A-205ENST00000541169 SF3B2Q13435 895 aaKnown RBP25.05■■□□□ 1.6
VPS33A-205ENST00000541169 AEBP1Q8IUX7 1158 aa25.04■■□□□ 1.6
VPS33A-205ENST00000541169 SHANK3Q9BYB0 1731 aa25.03■■□□□ 1.6
VPS33A-205ENST00000541169 HSP90AB1P08238 724 aaKnown RBP25.03■■□□□ 1.6
VPS33A-205ENST00000541169 IFNL2Q8IZJ0 200 aa25.03■■□□□ 1.6
VPS33A-205ENST00000541169 UPF1Q92900 1129 aaKnown RBP eCLIP25.03■■□□□ 1.6
VPS33A-205ENST00000541169 NEFMP07197 916 aa25.02■■□□□ 1.6
VPS33A-205ENST00000541169 HMOX1P09601 288 aa25.02■■□□□ 1.6
VPS33A-205ENST00000541169 NKX1-1Q15270 411 aaPredicted RBP25.01■■□□□ 1.59
VPS33A-205ENST00000541169 FAM182BQ5T319 152 aa25■■□□□ 1.59
VPS33A-205ENST00000541169 C1orf141Q5JVX7 400 aa24.99■■□□□ 1.59
VPS33A-205ENST00000541169 BCL11BQ9C0K0 894 aaPredicted RBP24.99■■□□□ 1.59
VPS33A-205ENST00000541169 SBF2Q86WG5 1849 aa24.98■■□□□ 1.59
VPS33A-205ENST00000541169 CYP27B1O15528 508 aa24.98■■□□□ 1.59
VPS33A-205ENST00000541169 WDR43Q15061 677 aaKnown RBP eCLIP24.98■■□□□ 1.59
VPS33A-205ENST00000541169 RSPH6AQ9H0K4 717 aa24.98■■□□□ 1.59
VPS33A-205ENST00000541169 PHKG2P15735 406 aa24.97■■□□□ 1.59
VPS33A-205ENST00000541169 GAS2L2Q8NHY3 880 aa24.97■■□□□ 1.59
VPS33A-205ENST00000541169 ZNF530Q6P9A1 599 aaPredicted RBP24.96■■□□□ 1.59
VPS33A-205ENST00000541169 NHSQ6T4R5 1651 aa24.95■■□□□ 1.58
VPS33A-205ENST00000541169 TRIM37O94972 964 aa24.95■■□□□ 1.58
VPS33A-205ENST00000541169 PRKAR2BP31323 418 aa24.95■■□□□ 1.58
VPS33A-205ENST00000541169 AKAP4Q5JQC9 854 aa24.95■■□□□ 1.58
VPS33A-205ENST00000541169 DCAF5Q96JK2 942 aa24.95■■□□□ 1.58
VPS33A-205ENST00000541169 EP400Q96L91 3159 aa24.94■■□□□ 1.58
VPS33A-205ENST00000541169 BAG6P46379 1132 aa24.94■■□□□ 1.58
VPS33A-205ENST00000541169 TNS1Q9HBL0 1735 aaKnown RBP24.92■■□□□ 1.58
VPS33A-205ENST00000541169 ERVV-2B6SEH9 535 aa24.9■■□□□ 1.58
VPS33A-205ENST00000541169 HMGB2P26583 209 aaKnown RBP24.9■■□□□ 1.58
VPS33A-205ENST00000541169 DOT1LQ8TEK3 1739 aa24.89■■□□□ 1.58
VPS33A-205ENST00000541169 MAPK8IP3Q9UPT6 1336 aa24.89■■□□□ 1.58
VPS33A-205ENST00000541169 PLSCR1O15162 318 aa24.89■■□□□ 1.58
VPS33A-205ENST00000541169 APBA3O96018 575 aa24.89■■□□□ 1.58
VPS33A-205ENST00000541169 MTHFSDQ2M296 383 aaKnown RBP24.89■■□□□ 1.58
VPS33A-205ENST00000541169 DIEXFQ68CQ4 756 aaKnown RBP24.89■■□□□ 1.58
VPS33A-205ENST00000541169 RGPD3A6NKT7 1758 aaPredicted RBP24.89■■□□□ 1.57
VPS33A-205ENST00000541169 RGPD4Q7Z3J3 1758 aa24.89■■□□□ 1.57
VPS33A-205ENST00000541169 MRS2Q9HD23 443 aa24.88■■□□□ 1.57
VPS33A-205ENST00000541169 KAT6BQ8WYB5 2073 aa24.88■■□□□ 1.57
VPS33A-205ENST00000541169 PRIM1P49642 420 aaKnown RBP24.87■■□□□ 1.57
VPS33A-205ENST00000541169 PLEKHF1Q96S99 279 aa24.87■■□□□ 1.57
VPS33A-205ENST00000541169 GNAT3A8MTJ3 354 aa24.86■■□□□ 1.57
VPS33A-205ENST00000541169 HTATSF1O43719 755 aaKnown RBP24.86■■□□□ 1.57
VPS33A-205ENST00000541169 SYTL4Q96C24 671 aaPredicted RBP24.86■■□□□ 1.57
VPS33A-205ENST00000541169 ACSBG1Q96GR2 724 aa24.86■■□□□ 1.57
VPS33A-205ENST00000541169 MAP3K5Q99683 1374 aa24.85■■□□□ 1.57
VPS33A-205ENST00000541169 PHACTR3Q96KR7 559 aa24.85■■□□□ 1.57
VPS33A-205ENST00000541169 KCNQ2O43526 872 aa24.84■■□□□ 1.57
VPS33A-205ENST00000541169 TMOD3Q9NYL9 352 aa24.84■■□□□ 1.57
VPS33A-205ENST00000541169 ADAMTS8Q9UP79 889 aa24.84■■□□□ 1.57
VPS33A-205ENST00000541169 RUNDC1Q96C34 613 aa24.83■■□□□ 1.57
VPS33A-205ENST00000541169 SCN11AQ9UI33 1791 aa24.82■■□□□ 1.56
VPS33A-205ENST00000541169 BTAF1O14981 1849 aa24.82■■□□□ 1.56
VPS33A-205ENST00000541169 CCER2I3L3R5 266 aa24.82■■□□□ 1.56
VPS33A-205ENST00000541169 RTF1Q92541 710 aaKnown RBP24.82■■□□□ 1.56
VPS33A-205ENST00000541169 SMARCC1Q92922 1105 aaPredicted RBP24.82■■□□□ 1.56
VPS33A-205ENST00000541169 ITGB4P16144 1822 aa24.82■■□□□ 1.56
VPS33A-205ENST00000541169 ADAMTS7Q9UKP4 1686 aa24.81■■□□□ 1.56
VPS33A-205ENST00000541169 TOGARAM1Q9Y4F4 1720 aa24.81■■□□□ 1.56
VPS33A-205ENST00000541169 PNISRQ8TF01 805 aaKnown RBP24.81■■□□□ 1.56
VPS33A-205ENST00000541169 KDM6AO15550 1401 aaPredicted RBP24.8■■□□□ 1.56
VPS33A-205ENST00000541169 CABP4P57796 275 aa24.8■■□□□ 1.56
VPS33A-205ENST00000541169 MPRIPQ6WCQ1 1025 aa24.8■■□□□ 1.56
VPS33A-205ENST00000541169 RNMTO43148 476 aaKnown RBP24.79■■□□□ 1.56
VPS33A-205ENST00000541169 LMOD3Q0VAK6 560 aa24.79■■□□□ 1.56
VPS33A-205ENST00000541169 NFE2L2Q16236 605 aa24.79■■□□□ 1.56
VPS33A-205ENST00000541169 CAMKK2Q96RR4 588 aa24.79■■□□□ 1.56
VPS33A-205ENST00000541169 EN1Q05925 392 aaPredicted RBP24.77■■□□□ 1.56
VPS33A-205ENST00000541169 DEFB132Q7Z7B7 95 aa24.77■■□□□ 1.56
VPS33A-205ENST00000541169 PIGBQ92521 554 aa24.77■■□□□ 1.56
VPS33A-205ENST00000541169 SLC52A2Q9HAB3 445 aa24.77■■□□□ 1.56
VPS33A-205ENST00000541169 MRC1P22897 1456 aa24.77■■□□□ 1.56
VPS33A-205ENST00000541169 CCDC184Q52MB2 194 aa24.76■■□□□ 1.55
VPS33A-205ENST00000541169 SLC27A3Q5K4L6 730 aa24.76■■□□□ 1.55
VPS33A-205ENST00000541169 PTF1AQ7RTS3 328 aa24.76■■□□□ 1.55
VPS33A-205ENST00000541169 CEMIPQ8WUJ3 1361 aa24.76■■□□□ 1.55
VPS33A-205ENST00000541169 VIRMAQ69YN4 1812 aaKnown RBP24.75■■□□□ 1.55
VPS33A-205ENST00000541169 TEFQ10587 303 aa24.75■■□□□ 1.55
VPS33A-205ENST00000541169 NFATC2IPQ8NCF5 419 aa24.73■■□□□ 1.55
VPS33A-205ENST00000541169 LGR6Q9HBX8 967 aa24.73■■□□□ 1.55
VPS33A-205ENST00000541169 TMPOP42166 694 aaKnown RBP24.72■■□□□ 1.55
VPS33A-205ENST00000541169 IL17REQ8NFR9 667 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms