RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 DLG5Q8TDM6 1919 aa12.77□□□□□ -0.37
CDC42SE1-207ENST00000540998 GDPD2Q9HCC8 539 aa12.77□□□□□ -0.37
CDC42SE1-207ENST00000540998 ANKRD26Q9UPS8 1709 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 ATP10DQ9P241 1426 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 SYCE3A1L190 88 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 CALD1Q05682 793 aaKnown RBP12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 API5Q9BZZ5 524 aaKnown RBP12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 BRPF1P55201 1214 aaPredicted RBP12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 RABEP1Q15276 862 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 SLC52A1Q9NWF4 448 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 KIF20BQ96Q89 1820 aa12.76□□□□□ -0.37
CDC42SE1-207ENST00000540998 TMEM63CQ9P1W3 806 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 PALD1Q9ULE6 856 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 LARP6Q9BRS8 491 aaKnown RBP12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 ZFYVE9O95405 1425 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 SLC4A2P04920 1241 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 CCDC173Q0VFZ6 552 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 ANKRD44Q8N8A2 993 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 R3HCC1Q9Y3T6 440 aaKnown RBP12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 ALKQ9UM73 1620 aa12.75□□□□□ -0.37
CDC42SE1-207ENST00000540998 CPS1P31327 1500 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 INTS3Q68E01 1043 aaKnown RBP12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 COG3Q96JB2 828 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 ZMYND15Q9H091 742 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 CYP2E1P05181 493 aaPredicted RBP12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 NEK4P51957 841 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 HSP90AB2PQ58FF8 381 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 UPF3BQ9BZI7 483 aaKnown RBP12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 RGS12O14924 1447 aa12.74□□□□□ -0.37
CDC42SE1-207ENST00000540998 ZSCAN30Q86W11 494 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 PPP1R9BQ96SB3 815 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 DIP2CQ9Y2E4 1556 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 RTL1A6NKG5 1358 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 EIF4A2Q14240 407 aaKnown RBP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 TMEM131LA2VDJ0 1609 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 MSNP26038 577 aaKnown RBP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 ZNF428Q96B54 188 aa12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 NUDT16Q96DE0 195 aaKnown RBP12.73□□□□□ -0.37
CDC42SE1-207ENST00000540998 MAP4K4O95819 1239 aaPredicted RBP12.72□□□□□ -0.37
CDC42SE1-207ENST00000540998 ISY1Q9ULR0 285 aaKnown RBP12.72□□□□□ -0.37
CDC42SE1-207ENST00000540998 ANP32BQ92688 251 aaKnown RBP12.72□□□□□ -0.37
CDC42SE1-207ENST00000540998 IL25Q9H293 177 aa12.72□□□□□ -0.37
CDC42SE1-207ENST00000540998 AEBP2Q6ZN18 517 aaPredicted RBP12.71□□□□□ -0.37
CDC42SE1-207ENST00000540998 RILPL2Q969X0 211 aa12.71□□□□□ -0.37
CDC42SE1-207ENST00000540998 WASLO00401 505 aaPredicted RBP12.71□□□□□ -0.37
CDC42SE1-207ENST00000540998 UNC5CLQ8IV45 518 aa12.71□□□□□ -0.37
CDC42SE1-207ENST00000540998 RRP9O43818 475 aaKnown RBP12.71□□□□□ -0.38
CDC42SE1-207ENST00000540998 FAM13BQ9NYF5 915 aa12.71□□□□□ -0.38
CDC42SE1-207ENST00000540998 METP08581 1390 aa12.71□□□□□ -0.38
CDC42SE1-207ENST00000540998 NUCB2P80303 420 aa12.7□□□□□ -0.38
CDC42SE1-207ENST00000540998 TMX3Q96JJ7 454 aa12.7□□□□□ -0.38
CDC42SE1-207ENST00000540998 ST18O60284 1047 aa12.7□□□□□ -0.38
CDC42SE1-207ENST00000540998 CDC42BPGQ6DT37 1551 aa12.7□□□□□ -0.38
CDC42SE1-207ENST00000540998 PRR36Q9H6K5 1346 aa12.7□□□□□ -0.38
CDC42SE1-207ENST00000540998 PDE1AP54750 535 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 ZNF445P59923 1031 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 CLEC17AQ6ZS10 378 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 CHMP4BQ9H444 224 aaKnown RBP12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 ANO2Q9NQ90 1003 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 PNMA6EA0A0J9YXQ4 647 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 TRIM6-TRIM34B2RNG4 842 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 GADD45BO75293 160 aaPredicted RBP12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 CLTCQ00610 1675 aaKnown RBP12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 PREX1Q8TCU6 1659 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 ERC2O15083 957 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 IL1RAPL2Q9NP60 686 aa12.69□□□□□ -0.38
CDC42SE1-207ENST00000540998 ZNF830Q96NB3 372 aaPredicted RBP12.68□□□□□ -0.38
CDC42SE1-207ENST00000540998 CHL1O00533 1208 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 LMOD3Q0VAK6 560 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 TSC1Q92574 1164 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 PKNOX2Q96KN3 472 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 OFD1O75665 1012 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 C17orf53Q8N3J3 647 aaPredicted RBP12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 PLPPR3Q6T4P5 718 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 CASC1Q6TDU7 716 aa12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 RPAP2Q8IXW5 612 aaPredicted RBP12.67□□□□□ -0.38
CDC42SE1-207ENST00000540998 TSPYL4Q9UJ04 414 aa12.66□□□□□ -0.38
CDC42SE1-207ENST00000540998 CDK12Q9NYV4 1490 aaPredicted RBP12.66□□□□□ -0.38
CDC42SE1-207ENST00000540998 CPSF1Q10570 1443 aaKnown RBP12.66□□□□□ -0.38
CDC42SE1-207ENST00000540998 EDC4Q6P2E9 1401 aaKnown RBP12.66□□□□□ -0.38
CDC42SE1-207ENST00000540998 RIMS1Q86UR5 1692 aaKnown RBP12.66□□□□□ -0.38
CDC42SE1-207ENST00000540998 ARHGAP31Q2M1Z3 1444 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 FAM177BA6PVY3 158 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 REC8O95072 547 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 PTMSP20962 102 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 MTHFSDQ2M296 383 aaKnown RBP12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 NUTM1Q86Y26 1132 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 CCDC61Q9Y6R9 512 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 CPA1P15085 419 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 NUTM2GQ5VZR2 741 aa12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 DDX54Q8TDD1 881 aaKnown RBP12.65□□□□□ -0.38
CDC42SE1-207ENST00000540998 ATP7BP35670 1465 aa12.65□□□□□ -0.39
CDC42SE1-207ENST00000540998 GLIPR1L2Q4G1C9 344 aa12.65□□□□□ -0.39
CDC42SE1-207ENST00000540998 MAP3K19Q56UN5 1328 aa12.64□□□□□ -0.39
CDC42SE1-207ENST00000540998 PLEKHG5O94827 1062 aa12.64□□□□□ -0.39
CDC42SE1-207ENST00000540998 FKBP5Q13451 457 aaPredicted RBP12.64□□□□□ -0.39
CDC42SE1-207ENST00000540998 LRSAM1Q6UWE0 723 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms