RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 MEGF6O75095 1541 aa12.52□□□□□ -0.4
SNHG1-215ENST00000540904 APBA3O96018 575 aa12.52□□□□□ -0.41
SNHG1-215ENST00000540904 TATP17735 454 aaPredicted RBP12.52□□□□□ -0.41
SNHG1-215ENST00000540904 MTHFSP49914 203 aa12.52□□□□□ -0.41
SNHG1-215ENST00000540904 EN1Q05925 392 aaPredicted RBP12.52□□□□□ -0.41
SNHG1-215ENST00000540904 ZCRB1Q8TBF4 217 aaKnown RBP12.52□□□□□ -0.41
SNHG1-215ENST00000540904 WNK3Q9BYP7 1800 aa12.52□□□□□ -0.41
SNHG1-215ENST00000540904 MAP2P11137 1827 aaKnown RBP12.51□□□□□ -0.41
SNHG1-215ENST00000540904 PTF1AQ7RTS3 328 aa12.5□□□□□ -0.41
SNHG1-215ENST00000540904 ACSBG1Q96GR2 724 aa12.5□□□□□ -0.41
SNHG1-215ENST00000540904 RGPD2P0DJD1 1756 aa12.5□□□□□ -0.41
SNHG1-215ENST00000540904 BCL9O00512 1426 aa12.49□□□□□ -0.41
SNHG1-215ENST00000540904 DDX10Q13206 875 aaKnown RBP12.49□□□□□ -0.41
SNHG1-215ENST00000540904 BCL11BQ9C0K0 894 aaPredicted RBP12.49□□□□□ -0.41
SNHG1-215ENST00000540904 NCAPD2Q15021 1401 aa12.48□□□□□ -0.41
SNHG1-215ENST00000540904 IGSF1Q8N6C5 1336 aa12.48□□□□□ -0.41
SNHG1-215ENST00000540904 KCNQ2O43526 872 aa12.48□□□□□ -0.41
SNHG1-215ENST00000540904 EZH2Q15910 746 aaKnown RBP12.48□□□□□ -0.41
SNHG1-215ENST00000540904 RGPD1P0DJD0 1748 aa12.48□□□□□ -0.41
SNHG1-215ENST00000540904 IL13P35225 146 aa12.47□□□□□ -0.41
SNHG1-215ENST00000540904 CAMKK2Q96RR4 588 aa12.47□□□□□ -0.41
SNHG1-215ENST00000540904 PCDH11XQ9BZA7 1347 aa12.46□□□□□ -0.41
SNHG1-215ENST00000540904 PCDH11YQ9BZA8 1340 aa12.46□□□□□ -0.41
SNHG1-215ENST00000540904 AEBP1Q8IUX7 1158 aa12.46□□□□□ -0.41
SNHG1-215ENST00000540904 SYTL4Q96C24 671 aaPredicted RBP12.46□□□□□ -0.41
SNHG1-215ENST00000540904 SPG7Q9UQ90 795 aa12.46□□□□□ -0.41
SNHG1-215ENST00000540904 TNS1Q9HBL0 1735 aaKnown RBP12.45□□□□□ -0.42
SNHG1-215ENST00000540904 CYP27B1O15528 508 aa12.45□□□□□ -0.42
SNHG1-215ENST00000540904 DIAPH1O60610 1272 aaKnown RBP12.45□□□□□ -0.42
SNHG1-215ENST00000540904 PRIM1P49642 420 aaKnown RBP12.45□□□□□ -0.42
SNHG1-215ENST00000540904 SULT6B1Q6IMI4 303 aa12.45□□□□□ -0.42
SNHG1-215ENST00000540904 PLSCR1O15162 318 aa12.44□□□□□ -0.42
SNHG1-215ENST00000540904 PPP2R1AP30153 589 aa12.44□□□□□ -0.42
SNHG1-215ENST00000540904 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.44□□□□□ -0.42
SNHG1-215ENST00000540904 PARD3Q8TEW0 1356 aa12.43□□□□□ -0.42
SNHG1-215ENST00000540904 CFAP53Q96M91 514 aa12.43□□□□□ -0.42
SNHG1-215ENST00000540904 U2SURPO15042 1029 aaKnown RBP12.42□□□□□ -0.42
SNHG1-215ENST00000540904 HMOX1P09601 288 aa12.42□□□□□ -0.42
SNHG1-215ENST00000540904 PLEKHO1Q53GL0 409 aaPredicted RBP12.41□□□□□ -0.42
SNHG1-215ENST00000540904 SBF2Q86WG5 1849 aa12.41□□□□□ -0.42
SNHG1-215ENST00000540904 KDRP35968 1356 aa12.41□□□□□ -0.42
SNHG1-215ENST00000540904 SHANK3Q9BYB0 1731 aa12.4□□□□□ -0.42
SNHG1-215ENST00000540904 NPM3O75607 178 aaKnown RBP12.4□□□□□ -0.42
SNHG1-215ENST00000540904 PHKG2P15735 406 aa12.4□□□□□ -0.42
SNHG1-215ENST00000540904 AMOTQ4VCS5 1084 aa12.4□□□□□ -0.42
SNHG1-215ENST00000540904 ZNF530Q6P9A1 599 aaPredicted RBP12.4□□□□□ -0.42
SNHG1-215ENST00000540904 IFNL2Q8IZJ0 200 aa12.4□□□□□ -0.42
SNHG1-215ENST00000540904 PROM2Q8N271 834 aa12.4□□□□□ -0.42
SNHG1-215ENST00000540904 COL3A1P02461 1466 aaPredicted RBP12.4□□□□□ -0.43
SNHG1-215ENST00000540904 NHSQ6T4R5 1651 aa12.39□□□□□ -0.43
SNHG1-215ENST00000540904 PSDA5PKW4 1024 aaPredicted RBP12.39□□□□□ -0.43
SNHG1-215ENST00000540904 NKX1-1Q15270 411 aaPredicted RBP12.39□□□□□ -0.43
SNHG1-215ENST00000540904 TXNRD1Q16881 649 aa12.39□□□□□ -0.43
SNHG1-215ENST00000540904 MPRIPQ6WCQ1 1025 aa12.39□□□□□ -0.43
SNHG1-215ENST00000540904 PLEKHG2Q9H7P9 1386 aa12.39□□□□□ -0.43
SNHG1-215ENST00000540904 PKD1L3Q7Z443 1732 aa12.38□□□□□ -0.43
SNHG1-215ENST00000540904 ZNF316A6NFI3 1004 aaPredicted RBP12.38□□□□□ -0.43
SNHG1-215ENST00000540904 R3HDM1Q15032 1099 aaKnown RBP12.38□□□□□ -0.43
SNHG1-215ENST00000540904 RALBP1Q15311 655 aa12.38□□□□□ -0.43
SNHG1-215ENST00000540904 C1orf141Q5JVX7 400 aa12.38□□□□□ -0.43
SNHG1-215ENST00000540904 NBPF14Q5TI25 921 aa12.38□□□□□ -0.43
SNHG1-215ENST00000540904 NUDCQ9Y266 331 aa12.38□□□□□ -0.43
SNHG1-215ENST00000540904 HSP90AB1P08238 724 aaKnown RBP12.37□□□□□ -0.43
SNHG1-215ENST00000540904 DOT1LQ8TEK3 1739 aa12.37□□□□□ -0.43
SNHG1-215ENST00000540904 U2AF1L5P0DN76 240 aaPredicted RBP12.36□□□□□ -0.43
SNHG1-215ENST00000540904 U2AF1Q01081 240 aaKnown RBP eCLIP12.36□□□□□ -0.431e-7■□□□□ 10
SNHG1-215ENST00000540904 PIGBQ92521 554 aa12.36□□□□□ -0.43
SNHG1-215ENST00000540904 DCAF5Q96JK2 942 aa12.36□□□□□ -0.43
SNHG1-215ENST00000540904 KCNQ4P56696 695 aa12.35□□□□□ -0.43
SNHG1-215ENST00000540904 ANO8Q9HCE9 1232 aaPredicted RBP12.35□□□□□ -0.43
SNHG1-215ENST00000540904 TMOD3Q9NYL9 352 aa12.35□□□□□ -0.43
SNHG1-215ENST00000540904 BTAF1O14981 1849 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
SNHG1-215ENST00000540904 AKAP4Q5JQC9 854 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 SLC27A3Q5K4L6 730 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 LRRC4BQ9NT99 713 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 RREB1Q92766 1687 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 KAT6BQ8WYB5 2073 aa12.34□□□□□ -0.43
SNHG1-215ENST00000540904 RGPD3A6NKT7 1758 aaPredicted RBP12.33□□□□□ -0.44
SNHG1-215ENST00000540904 RGPD4Q7Z3J3 1758 aa12.33□□□□□ -0.44
SNHG1-215ENST00000540904 ERVV-2B6SEH9 535 aa12.33□□□□□ -0.44
SNHG1-215ENST00000540904 PRKAR2BP31323 418 aa12.33□□□□□ -0.44
SNHG1-215ENST00000540904 RSPH6AQ9H0K4 717 aa12.33□□□□□ -0.44
SNHG1-215ENST00000540904 CCNL1Q9UK58 526 aaPredicted RBP12.33□□□□□ -0.44
SNHG1-215ENST00000540904 NUP188Q5SRE5 1749 aa12.33□□□□□ -0.44
SNHG1-215ENST00000540904 MYBBP1AQ9BQG0 1328 aaKnown RBP12.33□□□□□ -0.44
SNHG1-215ENST00000540904 PALLDQ8WX93 1383 aa12.32□□□□□ -0.44
SNHG1-215ENST00000540904 KDM6AO15550 1401 aaPredicted RBP12.32□□□□□ -0.44
SNHG1-215ENST00000540904 CABP4P57796 275 aa12.32□□□□□ -0.44
SNHG1-215ENST00000540904 SMARCC1Q92922 1105 aaPredicted RBP12.32□□□□□ -0.44
SNHG1-215ENST00000540904 STK32BQ9NY57 414 aa12.32□□□□□ -0.44
SNHG1-215ENST00000540904 ASAP1Q9ULH1 1129 aa12.32□□□□□ -0.44
SNHG1-215ENST00000540904 TOGARAM1Q9Y4F4 1720 aa12.31□□□□□ -0.44
SNHG1-215ENST00000540904 FCHSD2O94868 740 aa12.31□□□□□ -0.44
SNHG1-215ENST00000540904 SLC15A2Q16348 729 aa12.31□□□□□ -0.44
SNHG1-215ENST00000540904 GAS2L2Q8NHY3 880 aa12.31□□□□□ -0.44
SNHG1-215ENST00000540904 PHACTR3Q96KR7 559 aa12.31□□□□□ -0.44
SNHG1-215ENST00000540904 PRKRIP1Q9H875 184 aaPredicted RBP12.31□□□□□ -0.44
SNHG1-215ENST00000540904 NFATC2IPQ8NCF5 419 aa12.3□□□□□ -0.44
SNHG1-215ENST00000540904 LGR6Q9HBX8 967 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms