RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 KCNQ4P56696 695 aa10.38□□□□□ -0.75
YBX3-209ENST00000540747 NLGN2Q8NFZ4 835 aa10.38□□□□□ -0.75
YBX3-209ENST00000540747 DDX54Q8TDD1 881 aaKnown RBP10.38□□□□□ -0.75
YBX3-209ENST00000540747 KAT6BQ8WYB5 2073 aa10.37□□□□□ -0.75
YBX3-209ENST00000540747 RGPD2P0DJD1 1756 aa10.37□□□□□ -0.75
YBX3-209ENST00000540747 FBLN1P23142 703 aa10.36□□□□□ -0.75
YBX3-209ENST00000540747 POLD1P28340 1107 aa10.36□□□□□ -0.75
YBX3-209ENST00000540747 GPR162Q16538 588 aa10.36□□□□□ -0.75
YBX3-209ENST00000540747 ZCRB1Q8TBF4 217 aaKnown RBP10.36□□□□□ -0.75
YBX3-209ENST00000540747 LTV1Q96GA3 475 aaPredicted RBP10.36□□□□□ -0.75
YBX3-209ENST00000540747 TFCP2L1Q9NZI6 479 aa10.36□□□□□ -0.75
YBX3-209ENST00000540747 SENP3-EIF4A1A0A087X0R7 540 aa10.35□□□□□ -0.75
YBX3-209ENST00000540747 YBX3P16989 372 aaKnown RBP eCLIP10.35□□□□□ -0.752e-6■□□□□ 10.1
YBX3-209ENST00000540747 NBPF6Q5VWK0 638 aa10.35□□□□□ -0.75
YBX3-209ENST00000540747 COL23A1Q86Y22 540 aaPredicted RBP10.35□□□□□ -0.75
YBX3-209ENST00000540747 COG3Q96JB2 828 aa10.35□□□□□ -0.75
YBX3-209ENST00000540747 NBPF4Q96M43 638 aa10.35□□□□□ -0.75
YBX3-209ENST00000540747 CCNL1Q9UK58 526 aaPredicted RBP10.35□□□□□ -0.75
YBX3-209ENST00000540747 CGNL1Q0VF96 1302 aa10.34□□□□□ -0.75
YBX3-209ENST00000540747 NCAPD2Q15021 1401 aa10.34□□□□□ -0.75
YBX3-209ENST00000540747 ST20-MTHFSA0A0A6YYL1 179 aa10.34□□□□□ -0.75
YBX3-209ENST00000540747 FYB1O15117 783 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 AMPHP49418 695 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 SYTL4Q96C24 671 aaPredicted RBP10.33□□□□□ -0.76
YBX3-209ENST00000540747 ADCY9O60503 1353 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 INSRP06213 1382 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 C5P01031 1676 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 TOGARAM1Q9Y4F4 1720 aa10.33□□□□□ -0.76
YBX3-209ENST00000540747 KIF24Q5T7B8 1368 aa10.32□□□□□ -0.76
YBX3-209ENST00000540747 TONSLQ96HA7 1378 aa10.32□□□□□ -0.76
YBX3-209ENST00000540747 USP47Q96K76 1375 aa10.32□□□□□ -0.76
YBX3-209ENST00000540747 GIGYF1O75420 1035 aaPredicted RBP10.32□□□□□ -0.76
YBX3-209ENST00000540747 RRS1Q15050 365 aaKnown RBP10.32□□□□□ -0.76
YBX3-209ENST00000540747 TAF1LQ8IZX4 1826 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 CYP27B1O15528 508 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 GRIN3BO60391 1043 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 AMIGO3Q86WK7 504 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 KLHL34Q8N239 644 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 USHBP1Q8N6Y0 703 aa10.31□□□□□ -0.76
YBX3-209ENST00000540747 PKD1L3Q7Z443 1732 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 FLT4P35916 1363 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 PALLDQ8WX93 1383 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 SLC24A1O60721 1099 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 HSP90AB2PQ58FF8 381 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 GGNBP2Q9H3C7 697 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 CD2APQ9Y5K6 639 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 ATP10DQ9P241 1426 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 PCDH11XQ9BZA7 1347 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 PCDH11YQ9BZA8 1340 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 C4BP0C0L5 1744 aa10.3□□□□□ -0.76
YBX3-209ENST00000540747 MAP2P11137 1827 aaKnown RBP10.29□□□□□ -0.76
YBX3-209ENST00000540747 MSL1Q68DK7 614 aa10.29□□□□□ -0.76
YBX3-209ENST00000540747 PELP1Q8IZL8 1130 aaKnown RBP10.29□□□□□ -0.76
YBX3-209ENST00000540747 RAPGEF4Q8WZA2 1011 aa10.29□□□□□ -0.76
YBX3-209ENST00000540747 SMG6Q86US8 1419 aaKnown RBP10.29□□□□□ -0.76
YBX3-209ENST00000540747 UBR3Q6ZT12 1888 aa10.28□□□□□ -0.76
YBX3-209ENST00000540747 ANKRD26Q9UPS8 1709 aa10.28□□□□□ -0.76
YBX3-209ENST00000540747 TATP17735 454 aaPredicted RBP10.28□□□□□ -0.76
YBX3-209ENST00000540747 NKX1-1Q15270 411 aaPredicted RBP10.28□□□□□ -0.76
YBX3-209ENST00000540747 FLAD1Q8NFF5 587 aa10.28□□□□□ -0.76
YBX3-209ENST00000540747 CICQ96RK0 1608 aaPredicted RBP10.27□□□□□ -0.77
YBX3-209ENST00000540747 ITGB4P16144 1822 aa10.27□□□□□ -0.77
YBX3-209ENST00000540747 KIF20BQ96Q89 1820 aa10.27□□□□□ -0.77
YBX3-209ENST00000540747 HMGB2P26583 209 aaKnown RBP10.26□□□□□ -0.77
YBX3-209ENST00000540747 PIGBQ92521 554 aa10.26□□□□□ -0.77
YBX3-209ENST00000540747 SMARCC1Q92922 1105 aaPredicted RBP10.26□□□□□ -0.77
YBX3-209ENST00000540747 CARD14Q9BXL6 1004 aa10.26□□□□□ -0.77
YBX3-209ENST00000540747 MSH5O43196 834 aa10.25□□□□□ -0.77
YBX3-209ENST00000540747 TMF1P82094 1093 aa10.25□□□□□ -0.77
YBX3-209ENST00000540747 IFFO2Q5TF58 517 aa10.25□□□□□ -0.77
YBX3-209ENST00000540747 MPRIPQ6WCQ1 1025 aa10.25□□□□□ -0.77
YBX3-209ENST00000540747 EMILIN1Q9Y6C2 1016 aa10.25□□□□□ -0.77
YBX3-209ENST00000540747 NSD3Q9BZ95 1437 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.24□□□□□ -0.77
YBX3-209ENST00000540747 SSFA2P28290 1259 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 SMIM5Q71RC9 77 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 LINC00116Q8NCU8 138 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.24□□□□□ -0.775e-6■■□□□ 13.1
YBX3-209ENST00000540747 KDRP35968 1356 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 PLEKHG2Q9H7P9 1386 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 KIAA1551Q9HCM1 1747 aa10.24□□□□□ -0.77
YBX3-209ENST00000540747 LOC102724428A0A0B4J2F2 783 aa10.23□□□□□ -0.77
YBX3-209ENST00000540747 SIK1P57059 783 aa10.23□□□□□ -0.77
YBX3-209ENST00000540747 AK7Q96M32 723 aa10.23□□□□□ -0.77
YBX3-209ENST00000540747 WASHC2AQ641Q2 1341 aa10.23□□□□□ -0.77
YBX3-209ENST00000540747 IGSF1Q8N6C5 1336 aa10.23□□□□□ -0.77
YBX3-209ENST00000540747 KIF13BQ9NQT8 1826 aa10.22□□□□□ -0.77
YBX3-209ENST00000540747 ITPK1Q13572 414 aa10.22□□□□□ -0.77
YBX3-209ENST00000540747 PXDNLA1KZ92 1463 aa10.22□□□□□ -0.77
YBX3-209ENST00000540747 KIF3CO14782 793 aa10.21□□□□□ -0.77
YBX3-209ENST00000540747 HSPA6P17066 643 aa10.21□□□□□ -0.77
YBX3-209ENST00000540747 EYA1Q99502 592 aa10.21□□□□□ -0.77
YBX3-209ENST00000540747 GPBP1L1Q9HC44 474 aaPredicted RBP10.21□□□□□ -0.77
YBX3-209ENST00000540747 ASAP1Q9ULH1 1129 aa10.21□□□□□ -0.77
YBX3-209ENST00000540747 ZNF831Q5JPB2 1677 aa10.21□□□□□ -0.78
YBX3-209ENST00000540747 PHF14O94880 888 aa10.2□□□□□ -0.78
YBX3-209ENST00000540747 PHKG2P15735 406 aa10.2□□□□□ -0.78
YBX3-209ENST00000540747 CDCA8Q53HL2 280 aa10.2□□□□□ -0.78
YBX3-209ENST00000540747 C10orf71Q711Q0 1435 aa10.2□□□□□ -0.78
YBX3-209ENST00000540747 SLC4A9Q96Q91 983 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms