RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 U2AF1L5P0DN76 240 aaPredicted RBP14.06□□□□□ -0.16
VPS33A-204ENST00000540669 U2AF1Q01081 240 aaKnown RBP eCLIP14.06□□□□□ -0.16
VPS33A-204ENST00000540669 SULT6B1Q6IMI4 303 aa14.06□□□□□ -0.16
VPS33A-204ENST00000540669 TRPC5Q9UL62 973 aaPredicted RBP14.06□□□□□ -0.16
VPS33A-204ENST00000540669 U2SURPO15042 1029 aaKnown RBP14.05□□□□□ -0.16
VPS33A-204ENST00000540669 PRKAR2BP31323 418 aa14.05□□□□□ -0.16
VPS33A-204ENST00000540669 BARGINQ6ZT62 677 aa14.05□□□□□ -0.16
VPS33A-204ENST00000540669 LTV1Q96GA3 475 aaPredicted RBP14.05□□□□□ -0.16
VPS33A-204ENST00000540669 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.05□□□□□ -0.16
VPS33A-204ENST00000540669 THRAP3Q9Y2W1 955 aaKnown RBP14.05□□□□□ -0.16
VPS33A-204ENST00000540669 HMOX1P09601 288 aa14.04□□□□□ -0.16
VPS33A-204ENST00000540669 RXRBP28702 533 aa14.04□□□□□ -0.16
VPS33A-204ENST00000540669 USHBP1Q8N6Y0 703 aa14.04□□□□□ -0.16
VPS33A-204ENST00000540669 RUNDC1Q96C34 613 aa14.04□□□□□ -0.16
VPS33A-204ENST00000540669 ZNF521Q96K83 1311 aa14.04□□□□□ -0.16
VPS33A-204ENST00000540669 PHACTR3Q96KR7 559 aa14.03□□□□□ -0.16
VPS33A-204ENST00000540669 NLRP2Q9NX02 1062 aa14.03□□□□□ -0.16
VPS33A-204ENST00000540669 PAPPAQ13219 1627 aa14.03□□□□□ -0.16
VPS33A-204ENST00000540669 BRWD3Q6RI45 1802 aa14.03□□□□□ -0.16
VPS33A-204ENST00000540669 ONECUT3O60422 494 aaPredicted RBP14.02□□□□□ -0.17
VPS33A-204ENST00000540669 TOM1L2Q6ZVM7 507 aa14.02□□□□□ -0.17
VPS33A-204ENST00000540669 FAM9BQ8IZU0 186 aa14.02□□□□□ -0.17
VPS33A-204ENST00000540669 STRN4Q9NRL3 753 aa14.02□□□□□ -0.17
VPS33A-204ENST00000540669 RGS17Q9UGC6 210 aaPredicted RBP14.02□□□□□ -0.17
VPS33A-204ENST00000540669 CCDC9Q9Y3X0 531 aaKnown RBP14.02□□□□□ -0.17
VPS33A-204ENST00000540669 BCL9O00512 1426 aa14.01□□□□□ -0.17
VPS33A-204ENST00000540669 KDM6AO15550 1401 aaPredicted RBP14.01□□□□□ -0.17
VPS33A-204ENST00000540669 RBM6P78332 1123 aaKnown RBP14.01□□□□□ -0.17
VPS33A-204ENST00000540669 TCP11L2Q8N4U5 519 aa14.01□□□□□ -0.17
VPS33A-204ENST00000540669 QTRT2Q9H974 415 aaKnown RBP14.01□□□□□ -0.17
VPS33A-204ENST00000540669 CEMIPQ8WUJ3 1361 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 CSB-PGBD3P0DP91 1061 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 IL2RBP14784 551 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 CCDC27Q2M243 656 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 NGEFQ8N5V2 710 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 CDCA7Q9BWT1 371 aaPredicted RBP14□□□□□ -0.17
VPS33A-204ENST00000540669 KDM3BQ7LBC6 1761 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 DOT1LQ8TEK3 1739 aa14□□□□□ -0.17
VPS33A-204ENST00000540669 EP400Q96L91 3159 aa13.99□□□□□ -0.17
VPS33A-204ENST00000540669 NFE2L2Q16236 605 aa13.99□□□□□ -0.17
VPS33A-204ENST00000540669 CCDC146Q8IYE0 955 aa13.99□□□□□ -0.17
VPS33A-204ENST00000540669 PNNQ9H307 717 aaKnown RBP13.99□□□□□ -0.17
VPS33A-204ENST00000540669 SBF2Q86WG5 1849 aa13.99□□□□□ -0.17
VPS33A-204ENST00000540669 MAP3K5Q99683 1374 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 NHSQ6T4R5 1651 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 CICQ96RK0 1608 aaPredicted RBP13.98□□□□□ -0.17
VPS33A-204ENST00000540669 ZBED9Q6R2W3 1325 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 TMPOP42166 694 aaKnown RBP13.98□□□□□ -0.17
VPS33A-204ENST00000540669 EVA1CP58658 441 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 MTHFSDQ2M296 383 aaKnown RBP13.98□□□□□ -0.17
VPS33A-204ENST00000540669 POTEAQ6S8J7 498 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 ILDR2Q71H61 639 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 GJD4Q96KN9 370 aaPredicted RBP13.98□□□□□ -0.17
VPS33A-204ENST00000540669 ITGB4P16144 1822 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 UBR2Q8IWV8 1755 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 RGS12O14924 1447 aa13.98□□□□□ -0.17
VPS33A-204ENST00000540669 APAF1O14727 1248 aa13.97□□□□□ -0.17
VPS33A-204ENST00000540669 AMOTQ4VCS5 1084 aa13.97□□□□□ -0.17
VPS33A-204ENST00000540669 RAPGEF4Q8WZA2 1011 aa13.97□□□□□ -0.17
VPS33A-204ENST00000540669 TRIM35Q9UPQ4 493 aa13.97□□□□□ -0.17
VPS33A-204ENST00000540669 MAPK8IP3Q9UPT6 1336 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 A0A0G2JS52 829 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 SOCS7O14512 581 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 CYP27B1O15528 508 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 TATP17735 454 aaPredicted RBP13.96□□□□□ -0.17
VPS33A-204ENST00000540669 MYT1Q01538 1121 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 NKX1-1Q15270 411 aaPredicted RBP13.96□□□□□ -0.17
VPS33A-204ENST00000540669 GAS2L2Q8NHY3 880 aa13.96□□□□□ -0.17
VPS33A-204ENST00000540669 PCDH11XQ9BZA7 1347 aa13.95□□□□□ -0.18
VPS33A-204ENST00000540669 PCDH11YQ9BZA8 1340 aa13.95□□□□□ -0.18
VPS33A-204ENST00000540669 HTATSF1O43719 755 aaKnown RBP13.94□□□□□ -0.18
VPS33A-204ENST00000540669 PHKG2P15735 406 aa13.94□□□□□ -0.18
VPS33A-204ENST00000540669 PLEKHO1Q53GL0 409 aaPredicted RBP13.94□□□□□ -0.18
VPS33A-204ENST00000540669 AKAP4Q5JQC9 854 aa13.93□□□□□ -0.18
VPS33A-204ENST00000540669 ZNF831Q5JPB2 1677 aa13.92□□□□□ -0.18
VPS33A-204ENST00000540669 WWC1Q8IX03 1113 aa13.92□□□□□ -0.18
VPS33A-204ENST00000540669 ZCRB1Q8TBF4 217 aaKnown RBP13.92□□□□□ -0.18
VPS33A-204ENST00000540669 SPG7Q9UQ90 795 aa13.92□□□□□ -0.18
VPS33A-204ENST00000540669 IL16Q14005 1332 aa13.91□□□□□ -0.18
VPS33A-204ENST00000540669 TNS1Q9HBL0 1735 aaKnown RBP13.91□□□□□ -0.18
VPS33A-204ENST00000540669 HNRNPUQ00839 825 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS33A-204ENST00000540669 FAM98CQ17RN3 349 aaKnown RBP13.91□□□□□ -0.18
VPS33A-204ENST00000540669 ZNF530Q6P9A1 599 aaPredicted RBP13.91□□□□□ -0.18
VPS33A-204ENST00000540669 USP35Q9P2H5 1018 aa13.91□□□□□ -0.18
VPS33A-204ENST00000540669 GNAT3A8MTJ3 354 aa13.9□□□□□ -0.18
VPS33A-204ENST00000540669 LMOD3Q0VAK6 560 aa13.9□□□□□ -0.18
VPS33A-204ENST00000540669 RRP7AQ9Y3A4 280 aaKnown RBP13.9□□□□□ -0.18
VPS33A-204ENST00000540669 RGPD3A6NKT7 1758 aaPredicted RBP13.9□□□□□ -0.18
VPS33A-204ENST00000540669 RGPD4Q7Z3J3 1758 aa13.9□□□□□ -0.18
VPS33A-204ENST00000540669 ZNF853P0CG23 659 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 RIPK4P57078 832 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 TRMT2AQ8IZ69 625 aaKnown RBP13.89□□□□□ -0.19
VPS33A-204ENST00000540669 IFNL2Q8IZJ0 200 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 MARCH10Q8NA82 808 aaPredicted RBP13.89□□□□□ -0.19
VPS33A-204ENST00000540669 IL17REQ8NFR9 667 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 BTAF1O14981 1849 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 KCPQ6ZWJ8 1503 aa13.89□□□□□ -0.19
VPS33A-204ENST00000540669 LAMB4A4D0S4 1761 aa13.88□□□□□ -0.19
VPS33A-204ENST00000540669 LY75O60449 1722 aa13.88□□□□□ -0.19
VPS33A-204ENST00000540669 NEFMP07197 916 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms