RNA–Protein interactions for RNA: ENST00000540090.5

LPCAT3-210, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 1 (best)

Gene LPCAT3, Length 974 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-210ENST00000540090 SLC24A1O60721 1099 aa28.14■■■□□ 2.1
LPCAT3-210ENST00000540090 NSD2O96028 1365 aa28.11■■■□□ 2.09
LPCAT3-210ENST00000540090 CHD4Q14839 1912 aa28.11■■■□□ 2.09
LPCAT3-210ENST00000540090 FAM208AQ9UK61 1670 aaKnown RBP28.1■■■□□ 2.09
LPCAT3-210ENST00000540090 C1QTNF8P60827 252 aa28.1■■■□□ 2.09
LPCAT3-210ENST00000540090 KLHL34Q8N239 644 aa28.1■■■□□ 2.09
LPCAT3-210ENST00000540090 GOLGB1Q14789 3259 aaKnown RBP28.1■■■□□ 2.09
LPCAT3-210ENST00000540090 NBPF6Q5VWK0 638 aa28.08■■■□□ 2.09
LPCAT3-210ENST00000540090 NBPF4Q96M43 638 aa28.08■■■□□ 2.09
LPCAT3-210ENST00000540090 CCNL1Q9UK58 526 aaPredicted RBP28.08■■■□□ 2.09
LPCAT3-210ENST00000540090 QSER1Q2KHR3 1735 aa28.07■■■□□ 2.08
LPCAT3-210ENST00000540090 MEGF6O75095 1541 aa28.07■■■□□ 2.08
LPCAT3-210ENST00000540090 CGNL1Q0VF96 1302 aa28.06■■■□□ 2.08
LPCAT3-210ENST00000540090 RTL1A6NKG5 1358 aa28.05■■■□□ 2.08
LPCAT3-210ENST00000540090 FYB1O15117 783 aa28.05■■■□□ 2.08
LPCAT3-210ENST00000540090 RRS1Q15050 365 aaKnown RBP28.05■■■□□ 2.08
LPCAT3-210ENST00000540090 COL24A1Q17RW2 1714 aa28.05■■■□□ 2.08
LPCAT3-210ENST00000540090 NLGN2Q8NFZ4 835 aa28.05■■■□□ 2.08
LPCAT3-210ENST00000540090 COL23A1Q86Y22 540 aaPredicted RBP28.03■■■□□ 2.08
LPCAT3-210ENST00000540090 PELP1Q8IZL8 1130 aaKnown RBP28.03■■■□□ 2.08
LPCAT3-210ENST00000540090 USP47Q96K76 1375 aa28.02■■■□□ 2.08
LPCAT3-210ENST00000540090 SENP3-EIF4A1A0A087X0R7 540 aa28.02■■■□□ 2.08
LPCAT3-210ENST00000540090 LY75O60449 1722 aa28.01■■■□□ 2.07
LPCAT3-210ENST00000540090 USHBP1Q8N6Y0 703 aa28.01■■■□□ 2.07
LPCAT3-210ENST00000540090 RAPGEF4Q8WZA2 1011 aa28.01■■■□□ 2.07
LPCAT3-210ENST00000540090 GGNBP2Q9H3C7 697 aa28.01■■■□□ 2.07
LPCAT3-210ENST00000540090 DOT1LQ8TEK3 1739 aa28■■■□□ 2.07
LPCAT3-210ENST00000540090 SHANK3Q9BYB0 1731 aa27.98■■■□□ 2.07
LPCAT3-210ENST00000540090 MSH5O43196 834 aa27.98■■■□□ 2.07
LPCAT3-210ENST00000540090 TATP17735 454 aaPredicted RBP27.98■■■□□ 2.07
LPCAT3-210ENST00000540090 RGPD2P0DJD1 1756 aa27.97■■■□□ 2.07
LPCAT3-210ENST00000540090 TUBGCP6Q96RT7 1819 aa27.97■■■□□ 2.07
LPCAT3-210ENST00000540090 GRIN3BO60391 1043 aa27.96■■■□□ 2.07
LPCAT3-210ENST00000540090 HMGB2P26583 209 aaKnown RBP27.96■■■□□ 2.07
LPCAT3-210ENST00000540090 TMF1P82094 1093 aa27.96■■■□□ 2.07
LPCAT3-210ENST00000540090 HSP90AB2PQ58FF8 381 aa27.96■■■□□ 2.07
LPCAT3-210ENST00000540090 SMG6Q86US8 1419 aaKnown RBP27.95■■■□□ 2.07
LPCAT3-210ENST00000540090 YBX3P16989 372 aaKnown RBP eCLIP27.95■■■□□ 2.06
LPCAT3-210ENST00000540090 INSRP06213 1382 aa27.95■■■□□ 2.06
LPCAT3-210ENST00000540090 GIGYF1O75420 1035 aaPredicted RBP27.94■■■□□ 2.06
LPCAT3-210ENST00000540090 PCDH11XQ9BZA7 1347 aa27.92■■■□□ 2.06
LPCAT3-210ENST00000540090 PCDH11YQ9BZA8 1340 aa27.92■■■□□ 2.06
LPCAT3-210ENST00000540090 MSL1Q68DK7 614 aa27.92■■■□□ 2.06
LPCAT3-210ENST00000540090 FLAD1Q8NFF5 587 aa27.92■■■□□ 2.06
LPCAT3-210ENST00000540090 KIF24Q5T7B8 1368 aa27.91■■■□□ 2.06
LPCAT3-210ENST00000540090 CYP27B1O15528 508 aa27.9■■■□□ 2.06
LPCAT3-210ENST00000540090 MPRIPQ6WCQ1 1025 aa27.9■■■□□ 2.06
LPCAT3-210ENST00000540090 FLT4P35916 1363 aa27.89■■■□□ 2.06
LPCAT3-210ENST00000540090 PALLDQ8WX93 1383 aa27.89■■■□□ 2.06
LPCAT3-210ENST00000540090 CD2APQ9Y5K6 639 aa27.89■■■□□ 2.06
LPCAT3-210ENST00000540090 CDCA8Q53HL2 280 aa27.87■■■□□ 2.05
LPCAT3-210ENST00000540090 SMARCC1Q92922 1105 aaPredicted RBP27.86■■■□□ 2.05
LPCAT3-210ENST00000540090 CARD14Q9BXL6 1004 aa27.84■■■□□ 2.05
LPCAT3-210ENST00000540090 NKX1-1Q15270 411 aaPredicted RBP27.82■■■□□ 2.04
LPCAT3-210ENST00000540090 PIGBQ92521 554 aa27.82■■■□□ 2.04
LPCAT3-210ENST00000540090 EMILIN1Q9Y6C2 1016 aa27.82■■■□□ 2.04
LPCAT3-210ENST00000540090 AK7Q96M32 723 aa27.81■■■□□ 2.04
LPCAT3-210ENST00000540090 AMIGO3Q86WK7 504 aa27.8■■■□□ 2.04
LPCAT3-210ENST00000540090 C5P01031 1676 aa27.8■■■□□ 2.04
LPCAT3-210ENST00000540090 NCAPD2Q15021 1401 aa27.77■■■□□ 2.04
LPCAT3-210ENST00000540090 SPG7Q9UQ90 795 aa27.77■■■□□ 2.04
LPCAT3-210ENST00000540090 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.76■■■□□ 2.03
LPCAT3-210ENST00000540090 CEP350Q5VT06 3117 aa27.76■■■□□ 2.03
LPCAT3-210ENST00000540090 ATP10DQ9P241 1426 aa27.75■■■□□ 2.03
LPCAT3-210ENST00000540090 WASHC2AQ641Q2 1341 aa27.75■■■□□ 2.03
LPCAT3-210ENST00000540090 SMIM5Q71RC9 77 aa27.75■■■□□ 2.03
LPCAT3-210ENST00000540090 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.75■■■□□ 2.03
LPCAT3-210ENST00000540090 TAF1LQ8IZX4 1826 aa27.74■■■□□ 2.03
LPCAT3-210ENST00000540090 LOC102724428A0A0B4J2F2 783 aa27.74■■■□□ 2.03
LPCAT3-210ENST00000540090 PPM1GO15355 546 aaPredicted RBP27.74■■■□□ 2.03
LPCAT3-210ENST00000540090 SIK1P57059 783 aa27.74■■■□□ 2.03
LPCAT3-210ENST00000540090 NSD3Q9BZ95 1437 aa27.74■■■□□ 2.03
LPCAT3-210ENST00000540090 C4BP0C0L5 1744 aa27.73■■■□□ 2.03
LPCAT3-210ENST00000540090 PHF14O94880 888 aa27.73■■■□□ 2.03
LPCAT3-210ENST00000540090 SSFA2P28290 1259 aa27.73■■■□□ 2.03
LPCAT3-210ENST00000540090 EYA1Q99502 592 aa27.73■■■□□ 2.03
LPCAT3-210ENST00000540090 KIF20BQ96Q89 1820 aa27.72■■■□□ 2.03
LPCAT3-210ENST00000540090 LINC00116Q8NCU8 138 aa27.72■■■□□ 2.03
LPCAT3-210ENST00000540090 TOGARAM1Q9Y4F4 1720 aa27.72■■■□□ 2.03
LPCAT3-210ENST00000540090 GPBP1L1Q9HC44 474 aaPredicted RBP27.71■■■□□ 2.03
LPCAT3-210ENST00000540090 TMOD3Q9NYL9 352 aa27.7■■■□□ 2.02
LPCAT3-210ENST00000540090 PKD1L3Q7Z443 1732 aa27.7■■■□□ 2.02
LPCAT3-210ENST00000540090 IGSF1Q8N6C5 1336 aa27.69■■■□□ 2.02
LPCAT3-210ENST00000540090 ITGB4P16144 1822 aa27.69■■■□□ 2.02
LPCAT3-210ENST00000540090 ASAP1Q9ULH1 1129 aa27.69■■■□□ 2.02
LPCAT3-210ENST00000540090 ADCY9O60503 1353 aa27.69■■■□□ 2.02
LPCAT3-210ENST00000540090 IFNL2Q8IZJ0 200 aa27.68■■■□□ 2.02
LPCAT3-210ENST00000540090 PHKG2P15735 406 aa27.67■■■□□ 2.02
LPCAT3-210ENST00000540090 ITPK1Q13572 414 aa27.67■■■□□ 2.02
LPCAT3-210ENST00000540090 POLKQ9UBT6 870 aa27.67■■■□□ 2.02
LPCAT3-210ENST00000540090 ATP6V1AP38606 617 aa27.66■■■□□ 2.02
LPCAT3-210ENST00000540090 UBR3Q6ZT12 1888 aa27.65■■■□□ 2.02
LPCAT3-210ENST00000540090 MAP2P11137 1827 aaKnown RBP27.64■■■□□ 2.02
LPCAT3-210ENST00000540090 GNPATO15228 680 aa27.64■■■□□ 2.02
LPCAT3-210ENST00000540090 ATG3Q9NT62 314 aa27.64■■■□□ 2.02
LPCAT3-210ENST00000540090 WWC3Q9ULE0 1092 aa27.63■■■□□ 2.01
LPCAT3-210ENST00000540090 ZNF526Q8TF50 670 aaPredicted RBP27.62■■■□□ 2.01
LPCAT3-210ENST00000540090 EIF4A2Q14240 407 aaKnown RBP27.6■■■□□ 2.01
LPCAT3-210ENST00000540090 ANKRD26Q9UPS8 1709 aa27.59■■■□□ 2.01
LPCAT3-210ENST00000540090 IFFO2Q5TF58 517 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms