RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MEGF6O75095 1541 aa19.1■□□□□ 0.65
SS18-204ENST00000539244 NSD2O96028 1365 aa19.09■□□□□ 0.65
SS18-204ENST00000539244 FBLN1P23142 703 aa19.08■□□□□ 0.64
SS18-204ENST00000539244 ZCRB1Q8TBF4 217 aaKnown RBP19.08■□□□□ 0.64
SS18-204ENST00000539244 TUBGCP6Q96RT7 1819 aa19.07■□□□□ 0.64
SS18-204ENST00000539244 PNPLA7Q6ZV29 1317 aa19.07■□□□□ 0.64
SS18-204ENST00000539244 PRIM1P49642 420 aaKnown RBP19.07■□□□□ 0.64
SS18-204ENST00000539244 CGNL1Q0VF96 1302 aa19.06■□□□□ 0.64
SS18-204ENST00000539244 FYB1O15117 783 aa19.06■□□□□ 0.64
SS18-204ENST00000539244 TMF1P82094 1093 aa19.05■□□□□ 0.64
SS18-204ENST00000539244 ZNF784Q8NCA9 323 aaPredicted RBP19.05■□□□□ 0.64
SS18-204ENST00000539244 SYTL4Q96C24 671 aaPredicted RBP19.05■□□□□ 0.64
SS18-204ENST00000539244 RRS1Q15050 365 aaKnown RBP19.04■□□□□ 0.64
SS18-204ENST00000539244 NBPF6Q5VWK0 638 aa19.04■□□□□ 0.64
SS18-204ENST00000539244 NBPF4Q96M43 638 aa19.04■□□□□ 0.64
SS18-204ENST00000539244 SMG6Q86US8 1419 aaKnown RBP19.03■□□□□ 0.64
SS18-204ENST00000539244 KIF24Q5T7B8 1368 aa19.03■□□□□ 0.64
SS18-204ENST00000539244 USP47Q96K76 1375 aa19.03■□□□□ 0.64
SS18-204ENST00000539244 POLD1P28340 1107 aa19.02■□□□□ 0.64
SS18-204ENST00000539244 GGNBP2Q9H3C7 697 aa19.02■□□□□ 0.64
SS18-204ENST00000539244 TFCP2L1Q9NZI6 479 aa19.02■□□□□ 0.64
SS18-204ENST00000539244 INSRP06213 1382 aa19.02■□□□□ 0.64
SS18-204ENST00000539244 KIF20BQ96Q89 1820 aa19.02■□□□□ 0.63
SS18-204ENST00000539244 KCNQ4P56696 695 aa19.01■□□□□ 0.63
SS18-204ENST00000539244 RAPGEF4Q8WZA2 1011 aa19■□□□□ 0.63
SS18-204ENST00000539244 CCNL1Q9UK58 526 aaPredicted RBP19■□□□□ 0.63
SS18-204ENST00000539244 FLT4P35916 1363 aa18.99■□□□□ 0.63
SS18-204ENST00000539244 CDCA8Q53HL2 280 aa18.99■□□□□ 0.63
SS18-204ENST00000539244 GOLGB1Q14789 3259 aaKnown RBP18.98■□□□□ 0.63
SS18-204ENST00000539244 HSP90AB2PQ58FF8 381 aa18.98■□□□□ 0.63
SS18-204ENST00000539244 USHBP1Q8N6Y0 703 aa18.98■□□□□ 0.63
SS18-204ENST00000539244 TATP17735 454 aaPredicted RBP18.97■□□□□ 0.63
SS18-204ENST00000539244 PCDH11XQ9BZA7 1347 aa18.97■□□□□ 0.63
SS18-204ENST00000539244 PCDH11YQ9BZA8 1340 aa18.97■□□□□ 0.63
SS18-204ENST00000539244 GPR162Q16538 588 aa18.96■□□□□ 0.63
SS18-204ENST00000539244 C5P01031 1676 aa18.95■□□□□ 0.62
SS18-204ENST00000539244 NCAPD2Q15021 1401 aa18.95■□□□□ 0.62
SS18-204ENST00000539244 HMGB2P26583 209 aaKnown RBP18.95■□□□□ 0.62
SS18-204ENST00000539244 TAF1LQ8IZX4 1826 aa18.95■□□□□ 0.62
SS18-204ENST00000539244 PKD1L3Q7Z443 1732 aa18.94■□□□□ 0.62
SS18-204ENST00000539244 COL23A1Q86Y22 540 aaPredicted RBP18.94■□□□□ 0.62
SS18-204ENST00000539244 ANKRD26Q9UPS8 1709 aa18.94■□□□□ 0.62
SS18-204ENST00000539244 KLHL34Q8N239 644 aa18.93■□□□□ 0.62
SS18-204ENST00000539244 CARD14Q9BXL6 1004 aa18.93■□□□□ 0.62
SS18-204ENST00000539244 TOGARAM1Q9Y4F4 1720 aa18.93■□□□□ 0.62
SS18-204ENST00000539244 CYP27B1O15528 508 aa18.92■□□□□ 0.62
SS18-204ENST00000539244 NLGN2Q8NFZ4 835 aa18.92■□□□□ 0.62
SS18-204ENST00000539244 ITGB4P16144 1822 aa18.92■□□□□ 0.62
SS18-204ENST00000539244 PALLDQ8WX93 1383 aa18.92■□□□□ 0.62
SS18-204ENST00000539244 NSD3Q9BZ95 1437 aa18.91■□□□□ 0.62
SS18-204ENST00000539244 FLAD1Q8NFF5 587 aa18.9■□□□□ 0.62
SS18-204ENST00000539244 EMILIN1Q9Y6C2 1016 aa18.9■□□□□ 0.62
SS18-204ENST00000539244 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
SS18-204ENST00000539244 NKX1-1Q15270 411 aaPredicted RBP18.89■□□□□ 0.61
SS18-204ENST00000539244 MSH5O43196 834 aa18.88■□□□□ 0.61
SS18-204ENST00000539244 C1QTNF8P60827 252 aa18.88■□□□□ 0.61
SS18-204ENST00000539244 MPRIPQ6WCQ1 1025 aa18.88■□□□□ 0.61
SS18-204ENST00000539244 SMARCC1Q92922 1105 aaPredicted RBP18.88■□□□□ 0.61
SS18-204ENST00000539244 TIMELESSQ9UNS1 1208 aa18.88■□□□□ 0.61
SS18-204ENST00000539244 C4BP0C0L5 1744 aa18.88■□□□□ 0.61
SS18-204ENST00000539244 WASHC2AQ641Q2 1341 aa18.87■□□□□ 0.61
SS18-204ENST00000539244 MAP2P11137 1827 aaKnown RBP18.86■□□□□ 0.61
SS18-204ENST00000539244 GRIN3BO60391 1043 aa18.86■□□□□ 0.61
SS18-204ENST00000539244 YBX3P16989 372 aaKnown RBP eCLIP18.86■□□□□ 0.61
SS18-204ENST00000539244 PELP1Q8IZL8 1130 aaKnown RBP18.86■□□□□ 0.61
SS18-204ENST00000539244 UBR3Q6ZT12 1888 aa18.86■□□□□ 0.61
SS18-204ENST00000539244 MSL1Q68DK7 614 aa18.85■□□□□ 0.61
SS18-204ENST00000539244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.85■□□□□ 0.613e-7■■□□□ 13.5
SS18-204ENST00000539244 CD2APQ9Y5K6 639 aa18.85■□□□□ 0.61
SS18-204ENST00000539244 PIGBQ92521 554 aa18.84■□□□□ 0.61
SS18-204ENST00000539244 SPG7Q9UQ90 795 aa18.84■□□□□ 0.61
SS18-204ENST00000539244 PLEKHG2Q9H7P9 1386 aa18.83■□□□□ 0.61
SS18-204ENST00000539244 AK7Q96M32 723 aa18.82■□□□□ 0.6
SS18-204ENST00000539244 EYA1Q99502 592 aa18.82■□□□□ 0.6
SS18-204ENST00000539244 PPM1GO15355 546 aaPredicted RBP18.81■□□□□ 0.6
SS18-204ENST00000539244 AMIGO3Q86WK7 504 aa18.81■□□□□ 0.6
SS18-204ENST00000539244 POLKQ9UBT6 870 aa18.81■□□□□ 0.6
SS18-204ENST00000539244 CLSPNQ9HAW4 1339 aa18.8■□□□□ 0.6
SS18-204ENST00000539244 SENP3-EIF4A1A0A087X0R7 540 aa18.8■□□□□ 0.6
SS18-204ENST00000539244 GIGYF1O75420 1035 aaPredicted RBP18.8■□□□□ 0.6
SS18-204ENST00000539244 SSFA2P28290 1259 aa18.8■□□□□ 0.6
SS18-204ENST00000539244 LOC102724428A0A0B4J2F2 783 aa18.79■□□□□ 0.6
SS18-204ENST00000539244 SIK1P57059 783 aa18.79■□□□□ 0.6
SS18-204ENST00000539244 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.78■□□□□ 0.6
SS18-204ENST00000539244 PHKG2P15735 406 aa18.78■□□□□ 0.6
SS18-204ENST00000539244 IFNL2Q8IZJ0 200 aa18.78■□□□□ 0.6
SS18-204ENST00000539244 LINC00116Q8NCU8 138 aa18.78■□□□□ 0.6
SS18-204ENST00000539244 TMOD3Q9NYL9 352 aa18.78■□□□□ 0.6
SS18-204ENST00000539244 ASAP1Q9ULH1 1129 aa18.76■□□□□ 0.59
SS18-204ENST00000539244 PHF14O94880 888 aa18.75■□□□□ 0.59
SS18-204ENST00000539244 EIF4A2Q14240 407 aaKnown RBP18.75■□□□□ 0.59
SS18-204ENST00000539244 ZNF831Q5JPB2 1677 aa18.74■□□□□ 0.59
SS18-204ENST00000539244 ADCY9O60503 1353 aa18.74■□□□□ 0.59
SS18-204ENST00000539244 ITPK1Q13572 414 aa18.74■□□□□ 0.59
SS18-204ENST00000539244 ATG3Q9NT62 314 aa18.74■□□□□ 0.59
SS18-204ENST00000539244 IGSF1Q8N6C5 1336 aa18.74■□□□□ 0.59
SS18-204ENST00000539244 KDRP35968 1356 aa18.73■□□□□ 0.59
SS18-204ENST00000539244 SMIM5Q71RC9 77 aa18.73■□□□□ 0.59
SS18-204ENST00000539244 ATP10DQ9P241 1426 aa18.73■□□□□ 0.59
SS18-204ENST00000539244 ATP6V1AP38606 617 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 338.7 ms