RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 NCAPD2Q15021 1401 aa26.04■■□□□ 1.76
CLIP1-211ENST00000539080 R3HDM1Q15032 1099 aaKnown RBP26.03■■□□□ 1.76
CLIP1-211ENST00000539080 USHBP1Q8N6Y0 703 aa26.03■■□□□ 1.76
CLIP1-211ENST00000539080 LRP5O75197 1615 aa26.03■■□□□ 1.76
CLIP1-211ENST00000539080 KCNQ2O43526 872 aa26.02■■□□□ 1.76
CLIP1-211ENST00000539080 TATP17735 454 aaPredicted RBP26.02■■□□□ 1.76
CLIP1-211ENST00000539080 ACSBG1Q96GR2 724 aa26.01■■□□□ 1.75
CLIP1-211ENST00000539080 TNNT2P45379 298 aaPredicted RBP26■■□□□ 1.75
CLIP1-211ENST00000539080 BTAF1O14981 1849 aa26■■□□□ 1.75
CLIP1-211ENST00000539080 MORC1Q86VD1 984 aa25.99■■□□□ 1.75
CLIP1-211ENST00000539080 AMER1Q5JTC6 1135 aaPredicted RBP25.97■■□□□ 1.75
CLIP1-211ENST00000539080 PROM2Q8N271 834 aa25.97■■□□□ 1.75
CLIP1-211ENST00000539080 DOT1LQ8TEK3 1739 aa25.97■■□□□ 1.75
CLIP1-211ENST00000539080 PKD1L3Q7Z443 1732 aa25.96■■□□□ 1.75
CLIP1-211ENST00000539080 PCDH11XQ9BZA7 1347 aa25.95■■□□□ 1.75
CLIP1-211ENST00000539080 PCDH11YQ9BZA8 1340 aa25.95■■□□□ 1.75
CLIP1-211ENST00000539080 TXNRD1Q16881 649 aa25.95■■□□□ 1.74
CLIP1-211ENST00000539080 EYA1Q99502 592 aa25.95■■□□□ 1.74
CLIP1-211ENST00000539080 PER1O15534 1290 aaPredicted RBP25.94■■□□□ 1.74
CLIP1-211ENST00000539080 PLEKHG2Q9H7P9 1386 aa25.94■■□□□ 1.74
CLIP1-211ENST00000539080 EIF4A2Q14240 407 aaKnown RBP25.93■■□□□ 1.74
CLIP1-211ENST00000539080 KAT6BQ8WYB5 2073 aa25.92■■□□□ 1.74
CLIP1-211ENST00000539080 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.9■■□□□ 1.74
CLIP1-211ENST00000539080 PRIM1P49642 420 aaKnown RBP25.89■■□□□ 1.74
CLIP1-211ENST00000539080 NPC1L1Q9UHC9 1359 aa25.89■■□□□ 1.74
CLIP1-211ENST00000539080 SYTL4Q96C24 671 aaPredicted RBP25.88■■□□□ 1.73
CLIP1-211ENST00000539080 SPG7Q9UQ90 795 aa25.88■■□□□ 1.73
CLIP1-211ENST00000539080 SRCAPQ6ZRS2 3230 aa25.88■■□□□ 1.73
CLIP1-211ENST00000539080 IGSF1Q8N6C5 1336 aa25.88■■□□□ 1.73
CLIP1-211ENST00000539080 ANO8Q9HCE9 1232 aaPredicted RBP25.87■■□□□ 1.73
CLIP1-211ENST00000539080 PAPPAQ13219 1627 aa25.86■■□□□ 1.73
CLIP1-211ENST00000539080 CYP27B1O15528 508 aa25.86■■□□□ 1.73
CLIP1-211ENST00000539080 SLC27A3Q5K4L6 730 aa25.85■■□□□ 1.73
CLIP1-211ENST00000539080 STK32BQ9NY57 414 aa25.85■■□□□ 1.73
CLIP1-211ENST00000539080 LY75O60449 1722 aa25.85■■□□□ 1.73
CLIP1-211ENST00000539080 CASZ1Q86V15 1759 aa25.83■■□□□ 1.73
CLIP1-211ENST00000539080 NKX1-1Q15270 411 aaPredicted RBP25.83■■□□□ 1.73
CLIP1-211ENST00000539080 SLC15A2Q16348 729 aa25.83■■□□□ 1.73
CLIP1-211ENST00000539080 TOGARAM1Q9Y4F4 1720 aa25.81■■□□□ 1.72
CLIP1-211ENST00000539080 CC2D1BQ5T0F9 858 aaKnown RBP25.81■■□□□ 1.72
CLIP1-211ENST00000539080 LRRC4BQ9NT99 713 aa25.79■■□□□ 1.72
CLIP1-211ENST00000539080 ITGB4P16144 1822 aa25.79■■□□□ 1.72
CLIP1-211ENST00000539080 MTHFSP49914 203 aa25.78■■□□□ 1.72
CLIP1-211ENST00000539080 IFNL2Q8IZJ0 200 aa25.78■■□□□ 1.72
CLIP1-211ENST00000539080 IL13P35225 146 aa25.77■■□□□ 1.72
CLIP1-211ENST00000539080 SPON1Q9HCB6 807 aa25.77■■□□□ 1.72
CLIP1-211ENST00000539080 PHKG2P15735 406 aa25.76■■□□□ 1.71
CLIP1-211ENST00000539080 KDRP35968 1356 aa25.76■■□□□ 1.71
CLIP1-211ENST00000539080 HMGB2P26583 209 aaKnown RBP25.75■■□□□ 1.71
CLIP1-211ENST00000539080 QSER1Q2KHR3 1735 aa25.74■■□□□ 1.71
CLIP1-211ENST00000539080 AMOTQ4VCS5 1084 aa25.74■■□□□ 1.71
CLIP1-211ENST00000539080 PLEKHO1Q53GL0 409 aaPredicted RBP25.74■■□□□ 1.71
CLIP1-211ENST00000539080 MPRIPQ6WCQ1 1025 aa25.74■■□□□ 1.71
CLIP1-211ENST00000539080 AKT1S1Q96B36 256 aa25.72■■□□□ 1.71
CLIP1-211ENST00000539080 CCNL1Q9UK58 526 aaPredicted RBP25.72■■□□□ 1.71
CLIP1-211ENST00000539080 HSP90AB1P08238 724 aaKnown RBP25.71■■□□□ 1.71
CLIP1-211ENST00000539080 ZNF827Q17R98 1081 aa25.71■■□□□ 1.71
CLIP1-211ENST00000539080 SULT6B1Q6IMI4 303 aa25.71■■□□□ 1.71
CLIP1-211ENST00000539080 AEBP1Q8IUX7 1158 aa25.71■■□□□ 1.71
CLIP1-211ENST00000539080 SMARCC1Q92922 1105 aaPredicted RBP25.71■■□□□ 1.71
CLIP1-211ENST00000539080 PALLDQ8WX93 1383 aa25.7■■□□□ 1.71
CLIP1-211ENST00000539080 PDGFDQ9GZP0 370 aaPredicted RBP25.7■■□□□ 1.7
CLIP1-211ENST00000539080 PIGBQ92521 554 aa25.69■■□□□ 1.7
CLIP1-211ENST00000539080 DIAPH1O60610 1272 aaKnown RBP25.68■■□□□ 1.7
CLIP1-211ENST00000539080 TMOD3Q9NYL9 352 aa25.68■■□□□ 1.7
CLIP1-211ENST00000539080 C5P01031 1676 aa25.68■■□□□ 1.7
CLIP1-211ENST00000539080 DCAF5Q96JK2 942 aa25.67■■□□□ 1.7
CLIP1-211ENST00000539080 MTFR1LQ9H019 292 aa25.67■■□□□ 1.7
CLIP1-211ENST00000539080 KCNQ4P56696 695 aa25.66■■□□□ 1.7
CLIP1-211ENST00000539080 ZNF530Q6P9A1 599 aaPredicted RBP25.66■■□□□ 1.7
CLIP1-211ENST00000539080 COL3A1P02461 1466 aaPredicted RBP25.66■■□□□ 1.7
CLIP1-211ENST00000539080 ERVV-2B6SEH9 535 aa25.65■■□□□ 1.7
CLIP1-211ENST00000539080 ZBTB7AO95365 584 aa25.65■■□□□ 1.7
CLIP1-211ENST00000539080 PPP1R1BQ9UD71 204 aaPredicted RBP25.65■■□□□ 1.7
CLIP1-211ENST00000539080 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
CLIP1-211ENST00000539080 TUBGCP6Q96RT7 1819 aa25.65■■□□□ 1.7
CLIP1-211ENST00000539080 C1orf141Q5JVX7 400 aa25.64■■□□□ 1.7
CLIP1-211ENST00000539080 TFCP2L1Q9NZI6 479 aa25.64■■□□□ 1.7
CLIP1-211ENST00000539080 CNGB1Q14028 1251 aaPredicted RBP25.63■■□□□ 1.69
CLIP1-211ENST00000539080 SLC16A10Q8TF71 515 aa25.63■■□□□ 1.69
CLIP1-211ENST00000539080 KDM6AO15550 1401 aaPredicted RBP25.62■■□□□ 1.69
CLIP1-211ENST00000539080 PNPLA7Q6ZV29 1317 aa25.62■■□□□ 1.69
CLIP1-211ENST00000539080 PTGER2P43116 358 aa25.61■■□□□ 1.69
CLIP1-211ENST00000539080 ATF5Q9Y2D1 282 aaPredicted RBP25.6■■□□□ 1.69
CLIP1-211ENST00000539080 CFAP53Q96M91 514 aa25.59■■□□□ 1.69
CLIP1-211ENST00000539080 C4BP0C0L5 1744 aa25.58■■□□□ 1.69
CLIP1-211ENST00000539080 HMOX1P09601 288 aa25.58■■□□□ 1.69
CLIP1-211ENST00000539080 AKAP4Q5JQC9 854 aa25.58■■□□□ 1.69
CLIP1-211ENST00000539080 ASAP1Q9ULH1 1129 aa25.58■■□□□ 1.69
CLIP1-211ENST00000539080 ZNF831Q5JPB2 1677 aa25.58■■□□□ 1.68
CLIP1-211ENST00000539080 COL24A1Q17RW2 1714 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 SCN11AQ9UI33 1791 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 LOC102724428A0A0B4J2F2 783 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 SIK1P57059 783 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 SGIP1Q9BQI5 828 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 ATG3Q9NT62 314 aa25.57■■□□□ 1.68
CLIP1-211ENST00000539080 CABP4P57796 275 aa25.56■■□□□ 1.68
CLIP1-211ENST00000539080 PPP2R1AP30153 589 aa25.55■■□□□ 1.68
CLIP1-211ENST00000539080 FLAD1Q8NFF5 587 aa25.55■■□□□ 1.68
CLIP1-211ENST00000539080 U2SURPO15042 1029 aaKnown RBP25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms