RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 TRIM35Q9UPQ4 493 aa11.02□□□□□ -0.65
SNHG1-209ENST00000538654 PRPF40AO75400 957 aaKnown RBP11.01□□□□□ -0.65
SNHG1-209ENST00000538654 CD109Q6YHK3 1445 aa11.01□□□□□ -0.65
SNHG1-209ENST00000538654 ADGRF5Q8IZF2 1346 aa11.01□□□□□ -0.65
SNHG1-209ENST00000538654 PLEKHF1Q96S99 279 aa11.01□□□□□ -0.65
SNHG1-209ENST00000538654 PTMAP06454 111 aaKnown RBP11.01□□□□□ -0.65
SNHG1-209ENST00000538654 ANAPC15P60006 121 aa11.01□□□□□ -0.65
SNHG1-209ENST00000538654 SYAP1Q96A49 352 aaPredicted RBP11.01□□□□□ -0.65
SNHG1-209ENST00000538654 GTPBP4Q9BZE4 634 aaKnown RBP11.01□□□□□ -0.65
SNHG1-209ENST00000538654 ANKRD36BQ8N2N9 1353 aa11□□□□□ -0.65
SNHG1-209ENST00000538654 PIK3R4Q99570 1358 aa11□□□□□ -0.65
SNHG1-209ENST00000538654 LOC102724159A0A0B4J2E5 919 aa11□□□□□ -0.65
SNHG1-209ENST00000538654 ZBTB7BO15156 539 aaPredicted RBP11□□□□□ -0.65
SNHG1-209ENST00000538654 PWP2Q15269 919 aaKnown RBP11□□□□□ -0.65
SNHG1-209ENST00000538654 CASC1Q6TDU7 716 aa11□□□□□ -0.65
SNHG1-209ENST00000538654 GPT2Q8TD30 523 aa11□□□□□ -0.65
SNHG1-209ENST00000538654 SPAG9O60271 1321 aaKnown RBP11□□□□□ -0.65
SNHG1-209ENST00000538654 INTS3Q68E01 1043 aaKnown RBP11□□□□□ -0.65
SNHG1-209ENST00000538654 NOL8Q76FK4 1167 aaKnown RBP11□□□□□ -0.65
SNHG1-209ENST00000538654 GTPBP6O43824 516 aaPredicted RBP10.99□□□□□ -0.65
SNHG1-209ENST00000538654 SECISBP2LQ93073 1101 aaKnown RBP10.99□□□□□ -0.65
SNHG1-209ENST00000538654 PHF14O94880 888 aa10.99□□□□□ -0.65
SNHG1-209ENST00000538654 OS9Q13438 667 aaPredicted RBP10.99□□□□□ -0.65
SNHG1-209ENST00000538654 ZFYVE16Q7Z3T8 1539 aa10.99□□□□□ -0.65
SNHG1-209ENST00000538654 SYCE3A1L190 88 aa10.99□□□□□ -0.65
SNHG1-209ENST00000538654 GTF2F1P35269 517 aaKnown RBP eCLIP10.99□□□□□ -0.65
SNHG1-209ENST00000538654 DNTTIP2Q5QJE6 756 aaKnown RBP10.99□□□□□ -0.65
SNHG1-209ENST00000538654 USP26Q9BXU7 913 aa10.99□□□□□ -0.65
SNHG1-209ENST00000538654 PTCH1Q13635 1447 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 KIF20AO95235 890 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 TSPY26PQ9H489 355 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 TMEM63CQ9P1W3 806 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 DNAJC5BQ9UF47 199 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 U2SURPO15042 1029 aaKnown RBP10.98□□□□□ -0.65
SNHG1-209ENST00000538654 FOSBP53539 338 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 FAM184AQ8NB25 1140 aa10.98□□□□□ -0.65
SNHG1-209ENST00000538654 UVSSAQ2YD98 709 aa10.97□□□□□ -0.65
SNHG1-209ENST00000538654 RBM27Q9P2N5 1060 aaKnown RBP10.97□□□□□ -0.65
SNHG1-209ENST00000538654 ZSCAN20P17040 1043 aaPredicted RBP10.97□□□□□ -0.65
SNHG1-209ENST00000538654 FANCAO15360 1455 aa10.97□□□□□ -0.65
SNHG1-209ENST00000538654 COL3A1P02461 1466 aaPredicted RBP10.97□□□□□ -0.65
SNHG1-209ENST00000538654 EVC2Q86UK5 1308 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 MROH2AA6NES4 1674 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 REC8O95072 547 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 LETM1O95202 739 aaPredicted RBP10.96□□□□□ -0.65
SNHG1-209ENST00000538654 TTC22Q5TAA0 569 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 PIBF1Q8WXW3 757 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 PPP1R1BQ9UD71 204 aaPredicted RBP10.96□□□□□ -0.65
SNHG1-209ENST00000538654 KIF24Q5T7B8 1368 aa10.96□□□□□ -0.65
SNHG1-209ENST00000538654 ZNF662Q6ZS27 426 aa10.96□□□□□ -0.66
SNHG1-209ENST00000538654 SGSM3Q96HU1 749 aa10.96□□□□□ -0.66
SNHG1-209ENST00000538654 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.96□□□□□ -0.66
SNHG1-209ENST00000538654 MCM2P49736 904 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 PKP1Q13835 747 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 PLEKHM2Q8IWE5 1019 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 KDM4CQ9H3R0 1056 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 NAP1L2Q9ULW6 460 aaPredicted RBP10.95□□□□□ -0.66
SNHG1-209ENST00000538654 ANKRD26Q9UPS8 1709 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 ARAP3Q8WWN8 1544 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 GSPT1P15170 499 aaKnown RBP10.95□□□□□ -0.66
SNHG1-209ENST00000538654 ZHX1Q9UKY1 873 aaPredicted RBP10.95□□□□□ -0.66
SNHG1-209ENST00000538654 TRAK1Q9UPV9 953 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 ABCC4O15439 1325 aa10.95□□□□□ -0.66
SNHG1-209ENST00000538654 SEMA3EO15041 775 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 C14orf93Q9H972 538 aaKnown RBP10.94□□□□□ -0.66
SNHG1-209ENST00000538654 ZDHHC9Q9Y397 364 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 KIF3AQ9Y496 699 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 STK24Q9Y6E0 443 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 ADGRB3O60242 1522 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 EFCAB6Q5THR3 1501 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 ADGRB1O14514 1584 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 PPLO60437 1756 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 UGGT1Q9NYU2 1555 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 NOLC1Q14978 699 aaKnown RBP eCLIP10.94□□□□□ -0.662e-19■■■■■ 32.2
SNHG1-209ENST00000538654 SIRT2Q8IXJ6 389 aa10.94□□□□□ -0.66
SNHG1-209ENST00000538654 MRPL50Q8N5N7 158 aaKnown RBP10.94□□□□□ -0.66
SNHG1-209ENST00000538654 MYCNP04198 464 aaPredicted RBP10.93□□□□□ -0.66
SNHG1-209ENST00000538654 TAF3Q5VWG9 929 aa10.93□□□□□ -0.66
SNHG1-209ENST00000538654 ZGPATQ8N5A5 531 aaKnown RBP10.93□□□□□ -0.66
SNHG1-209ENST00000538654 RNF214Q8ND24 703 aa10.93□□□□□ -0.66
SNHG1-209ENST00000538654 API5Q9BZZ5 524 aaKnown RBP10.93□□□□□ -0.66
SNHG1-209ENST00000538654 DCTPP1Q9H773 170 aa10.93□□□□□ -0.66
SNHG1-209ENST00000538654 MARCH6O60337 910 aa10.93□□□□□ -0.66
SNHG1-209ENST00000538654 ATP7AQ04656 1500 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 UHRF1BP1LA0JNW5 1464 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 SPTLC3Q9NUV7 552 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 CDC42BPGQ6DT37 1551 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 DIAPH1O60610 1272 aaKnown RBP10.92□□□□□ -0.66
SNHG1-209ENST00000538654 FCHSD2O94868 740 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 CHAF1AQ13111 956 aaPredicted RBP10.92□□□□□ -0.66
SNHG1-209ENST00000538654 SIRT1Q96EB6 747 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 DIAPH3Q9NSV4 1193 aa10.92□□□□□ -0.66
SNHG1-209ENST00000538654 TPM3P06753 285 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 ZNF710Q8N1W2 664 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 RPGRIP1LQ68CZ1 1315 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 MROH1Q8NDA8 1641 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 ERC2O15083 957 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 VAMP4O75379 141 aa10.91□□□□□ -0.66
SNHG1-209ENST00000538654 FKBP5Q13451 457 aaPredicted RBP10.91□□□□□ -0.66
SNHG1-209ENST00000538654 PPP4R3BQ5MIZ7 849 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms