RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 PNPLA6Q8IY17 1366 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 GLI2P10070 1586 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 GADD45BO75293 160 aaPredicted RBP18.21■□□□□ 0.51
SYNE1-236ENST00000537750 ARAP3Q8WWN8 1544 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 KNDC1Q76NI1 1749 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.2■□□□□ 0.5
SYNE1-236ENST00000537750 FAM83GA6ND36 823 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 REC8O95072 547 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 IFT57Q9NWB7 429 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 PPLO60437 1756 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 BRD1O95696 1058 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 ANKRD44Q8N8A2 993 aa18.2■□□□□ 0.5
SYNE1-236ENST00000537750 TTC12Q9H892 705 aaPredicted RBP18.2■□□□□ 0.5
SYNE1-236ENST00000537750 FAM135BQ49AJ0 1406 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 ERC2O15083 957 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 ZSCAN20P17040 1043 aaPredicted RBP18.19■□□□□ 0.5
SYNE1-236ENST00000537750 CBX1P83916 185 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 DCTN1Q14203 1278 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 REREQ9P2R6 1566 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 NPATQ14207 1427 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 A0A0U1RQG5 324 aaPredicted RBP18.19■□□□□ 0.5
SYNE1-236ENST00000537750 ZNF853P0CG23 659 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 KRT24Q2M2I5 525 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 POLKQ9UBT6 870 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 USP25Q9UHP3 1055 aa18.19■□□□□ 0.5
SYNE1-236ENST00000537750 CEP85Q6P2H3 762 aa18.18■□□□□ 0.5
SYNE1-236ENST00000537750 DMTNQ08495 405 aa18.17■□□□□ 0.5
SYNE1-236ENST00000537750 NOLC1Q14978 699 aaKnown RBP eCLIP18.17■□□□□ 0.5
SYNE1-236ENST00000537750 TSHZ3Q63HK5 1081 aa18.17■□□□□ 0.5
SYNE1-236ENST00000537750 ARHGEF28Q8N1W1 1705 aaKnown RBP18.17■□□□□ 0.5
SYNE1-236ENST00000537750 UHRF1BP1LA0JNW5 1464 aa18.16■□□□□ 0.5
SYNE1-236ENST00000537750 VGFO15240 615 aaPredicted RBP18.16■□□□□ 0.5
SYNE1-236ENST00000537750 PLEKHG5O94827 1062 aa18.16■□□□□ 0.5
SYNE1-236ENST00000537750 CABP1Q9NZU7 370 aa18.16■□□□□ 0.5
SYNE1-236ENST00000537750 PALD1Q9ULE6 856 aa18.16■□□□□ 0.5
SYNE1-236ENST00000537750 PIBF1Q8WXW3 757 aa18.16■□□□□ 0.5
SYNE1-236ENST00000537750 ATP10DQ9P241 1426 aa18.15■□□□□ 0.5
SYNE1-236ENST00000537750 CD163L1Q9NR16 1453 aa18.15■□□□□ 0.5
SYNE1-236ENST00000537750 PRAM1Q96QH2 718 aa18.15■□□□□ 0.5
SYNE1-236ENST00000537750 MEIS3Q99687 375 aa18.15■□□□□ 0.5
SYNE1-236ENST00000537750 CAMSAP1Q5T5Y3 1602 aa18.15■□□□□ 0.5
SYNE1-236ENST00000537750 ATP2B3Q16720 1220 aa18.14■□□□□ 0.49
SYNE1-236ENST00000537750 HDGFL2Q7Z4V5 671 aaPredicted RBP18.14■□□□□ 0.49
SYNE1-236ENST00000537750 USP48Q86UV5 1035 aa18.14■□□□□ 0.49
SYNE1-236ENST00000537750 EMILIN1Q9Y6C2 1016 aa18.14■□□□□ 0.49
SYNE1-236ENST00000537750 LMTK2Q8IWU2 1503 aa18.14■□□□□ 0.49
SYNE1-236ENST00000537750 RPAP2Q8IXW5 612 aaPredicted RBP18.14■□□□□ 0.49
SYNE1-236ENST00000537750 ADCY5O95622 1261 aa18.13■□□□□ 0.49
SYNE1-236ENST00000537750 PPP4R3BQ5MIZ7 849 aa18.13■□□□□ 0.49
SYNE1-236ENST00000537750 SYAP1Q96A49 352 aaPredicted RBP18.13■□□□□ 0.49
SYNE1-236ENST00000537750 PRIMPOLQ96LW4 560 aa18.13■□□□□ 0.49
SYNE1-236ENST00000537750 CUL4AQ13619 759 aa18.12■□□□□ 0.49
SYNE1-236ENST00000537750 UPF3BQ9BZI7 483 aaKnown RBP18.12■□□□□ 0.49
SYNE1-236ENST00000537750 UTP14CQ5TAP6 766 aaKnown RBP18.12■□□□□ 0.49
SYNE1-236ENST00000537750 HCLS1P14317 486 aaPredicted RBP18.11■□□□□ 0.49
SYNE1-236ENST00000537750 PDE1AP54750 535 aa18.11■□□□□ 0.49
SYNE1-236ENST00000537750 PLCB2Q00722 1185 aa18.11■□□□□ 0.49
SYNE1-236ENST00000537750 ABCA9Q8IUA7 1624 aa18.11■□□□□ 0.49
SYNE1-236ENST00000537750 HMGN5P82970 282 aaKnown RBP18.11■□□□□ 0.49
SYNE1-236ENST00000537750 RTL1A6NKG5 1358 aa18.11■□□□□ 0.49
SYNE1-236ENST00000537750 MSH6P52701 1360 aa18.11■□□□□ 0.49
SYNE1-236ENST00000537750 SPDYE4A6NLX3 237 aa18.1■□□□□ 0.49
SYNE1-236ENST00000537750 KIF3AQ9Y496 699 aa18.1■□□□□ 0.49
SYNE1-236ENST00000537750 CDK19Q9BWU1 502 aa18.1■□□□□ 0.49
SYNE1-236ENST00000537750 GTF2F1P35269 517 aaKnown RBP eCLIP18.09■□□□□ 0.49
SYNE1-236ENST00000537750 BCL2L12Q9HB09 334 aa18.09■□□□□ 0.49
SYNE1-236ENST00000537750 YEATS2Q9ULM3 1422 aa18.09■□□□□ 0.49
SYNE1-236ENST00000537750 ANO2Q9NQ90 1003 aa18.09■□□□□ 0.49
SYNE1-236ENST00000537750 KIF24Q5T7B8 1368 aa18.09■□□□□ 0.49
SYNE1-236ENST00000537750 PHF14O94880 888 aa18.09■□□□□ 0.49
SYNE1-236ENST00000537750 KIDINS220Q9ULH0 1771 aa18.08■□□□□ 0.49
SYNE1-236ENST00000537750 IL13P35225 146 aa18.08■□□□□ 0.48
SYNE1-236ENST00000537750 ESYT1Q9BSJ8 1104 aa18.08■□□□□ 0.48
SYNE1-236ENST00000537750 ZFYVE9O95405 1425 aa18.08■□□□□ 0.48
SYNE1-236ENST00000537750 MCM2P49736 904 aa18.08■□□□□ 0.48
SYNE1-236ENST00000537750 FKBP5Q13451 457 aaPredicted RBP18.07■□□□□ 0.48
SYNE1-236ENST00000537750 ZRANB1Q9UGI0 708 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 EXOC6BQ9Y2D4 811 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 ARHGEF40Q8TER5 1519 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 UVSSAQ2YD98 709 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 FAM184AQ8NB25 1140 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 CNPY2Q9Y2B0 182 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 RGS12O14924 1447 aa18.07■□□□□ 0.48
SYNE1-236ENST00000537750 INTS4Q96HW7 963 aaKnown RBP18.06■□□□□ 0.48
SYNE1-236ENST00000537750 ANKRD26Q9UPS8 1709 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 ABCC3O15438 1527 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 IGSF3O75054 1194 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 RILPL2Q969X0 211 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 SRCIN1Q9C0H9 1055 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 CDC42BPGQ6DT37 1551 aa18.06■□□□□ 0.48
SYNE1-236ENST00000537750 RIMS2Q9UQ26 1411 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.05■□□□□ 0.48
SYNE1-236ENST00000537750 SPTLC3Q9NUV7 552 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 YTHDC2Q9H6S0 1430 aaKnown RBP18.05■□□□□ 0.48
SYNE1-236ENST00000537750 DTNBO60941 627 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 TCHHQ07283 1943 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 AP5Z1O43299 807 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 IDI1Q13907 227 aa18.05■□□□□ 0.48
SYNE1-236ENST00000537750 CCDC183Q5T5S1 534 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms