RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PPARGC1BQ86YN6 1023 aaKnown RBP13.41□□□□□ -0.26
USP28-205ENST00000537706 ANKRD36BQ8N2N9 1353 aa13.4□□□□□ -0.26
USP28-205ENST00000537706 USP47Q96K76 1375 aa13.4□□□□□ -0.26
USP28-205ENST00000537706 ARHGAP27Q6ZUM4 889 aa13.4□□□□□ -0.26
USP28-205ENST00000537706 CABP2Q9NPB3 220 aa13.39□□□□□ -0.27
USP28-205ENST00000537706 CABP1Q9NZU7 370 aa13.39□□□□□ -0.27
USP28-205ENST00000537706 CICQ96RK0 1608 aaPredicted RBP13.39□□□□□ -0.27
USP28-205ENST00000537706 TUBGCP6Q96RT7 1819 aa13.39□□□□□ -0.27
USP28-205ENST00000537706 ZNF692Q9BU19 519 aaPredicted RBP13.39□□□□□ -0.27
USP28-205ENST00000537706 PIK3C2AO00443 1686 aa13.39□□□□□ -0.27
USP28-205ENST00000537706 ERBB3P21860 1342 aa13.38□□□□□ -0.27
USP28-205ENST00000537706 TTC21AQ8NDW8 1320 aa13.38□□□□□ -0.27
USP28-205ENST00000537706 BCS1LQ9Y276 419 aa13.38□□□□□ -0.27
USP28-205ENST00000537706 NSD3Q9BZ95 1437 aa13.38□□□□□ -0.27
USP28-205ENST00000537706 AK7Q96M32 723 aa13.37□□□□□ -0.27
USP28-205ENST00000537706 TTC21BQ7Z4L5 1316 aa13.37□□□□□ -0.27
USP28-205ENST00000537706 C10orf71Q711Q0 1435 aa13.36□□□□□ -0.27
USP28-205ENST00000537706 ANKRD24Q8TF21 1146 aa13.36□□□□□ -0.27
USP28-205ENST00000537706 TGFB2P61812 414 aa13.35□□□□□ -0.27
USP28-205ENST00000537706 FAM161AQ3B820 660 aa13.35□□□□□ -0.27
USP28-205ENST00000537706 C9orf131Q5VYM1 1079 aa13.35□□□□□ -0.27
USP28-205ENST00000537706 RRAGCQ9HB90 399 aa13.35□□□□□ -0.27
USP28-205ENST00000537706 PRDM10Q9NQV6 1147 aa13.35□□□□□ -0.27
USP28-205ENST00000537706 KAT6BQ8WYB5 2073 aa13.34□□□□□ -0.27
USP28-205ENST00000537706 QRICH2Q9H0J4 1663 aa13.34□□□□□ -0.27
USP28-205ENST00000537706 AIDAQ96BJ3 306 aa13.33□□□□□ -0.28
USP28-205ENST00000537706 CENPJQ9HC77 1338 aaPredicted RBP13.33□□□□□ -0.28
USP28-205ENST00000537706 FCHSD2O94868 740 aa13.33□□□□□ -0.28
USP28-205ENST00000537706 RGPD5Q99666 1765 aa13.32□□□□□ -0.28
USP28-205ENST00000537706 LY75O60449 1722 aa13.32□□□□□ -0.28
USP28-205ENST00000537706 PHF14O94880 888 aa13.31□□□□□ -0.28
USP28-205ENST00000537706 NSD2O96028 1365 aa13.31□□□□□ -0.28
USP28-205ENST00000537706 NFAT5O94916 1531 aa13.31□□□□□ -0.28
USP28-205ENST00000537706 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
USP28-205ENST00000537706 CTCFP49711 727 aaPredicted RBP13.3□□□□□ -0.28
USP28-205ENST00000537706 ZCRB1Q8TBF4 217 aaKnown RBP13.3□□□□□ -0.28
USP28-205ENST00000537706 KCPQ6ZWJ8 1503 aa13.3□□□□□ -0.28
USP28-205ENST00000537706 SSFA2P28290 1259 aa13.29□□□□□ -0.28
USP28-205ENST00000537706 RNF181Q9P0P0 153 aa13.29□□□□□ -0.28
USP28-205ENST00000537706 EVC2Q86UK5 1308 aa13.29□□□□□ -0.28
USP28-205ENST00000537706 SMARCC1Q92922 1105 aaPredicted RBP13.29□□□□□ -0.28
USP28-205ENST00000537706 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.28□□□□□ -0.28
USP28-205ENST00000537706 CCDC87Q9NVE4 849 aa13.28□□□□□ -0.28
USP28-205ENST00000537706 PXDNLA1KZ92 1463 aa13.28□□□□□ -0.28
USP28-205ENST00000537706 A0A0G2JLW4 131 aa13.27□□□□□ -0.28
USP28-205ENST00000537706 PALLDQ8WX93 1383 aa13.27□□□□□ -0.28
USP28-205ENST00000537706 VEGFAP15692 232 aaPredicted RBP13.27□□□□□ -0.29
USP28-205ENST00000537706 MMP10P09238 476 aa13.26□□□□□ -0.29
USP28-205ENST00000537706 KTN1Q86UP2 1357 aaKnown RBP13.25□□□□□ -0.29
USP28-205ENST00000537706 FOXN1O15353 648 aa13.25□□□□□ -0.29
USP28-205ENST00000537706 ABHD8Q96I13 439 aa13.25□□□□□ -0.29
USP28-205ENST00000537706 DOT1LQ8TEK3 1739 aa13.25□□□□□ -0.29
USP28-205ENST00000537706 ZC3H4Q9UPT8 1303 aaKnown RBP13.25□□□□□ -0.29
USP28-205ENST00000537706 C5P01031 1676 aa13.25□□□□□ -0.29
USP28-205ENST00000537706 LTV1Q96GA3 475 aaPredicted RBP13.25□□□□□ -0.29
USP28-205ENST00000537706 USP31Q70CQ4 1352 aa13.24□□□□□ -0.29
USP28-205ENST00000537706 DPEP1P16444 411 aa13.24□□□□□ -0.29
USP28-205ENST00000537706 TNRC6CQ9HCJ0 1690 aaKnown RBP13.24□□□□□ -0.29
USP28-205ENST00000537706 CREBZFQ9NS37 354 aa13.23□□□□□ -0.29
USP28-205ENST00000537706 PIM2Q9P1W9 311 aa13.23□□□□□ -0.29
USP28-205ENST00000537706 DALRD3Q5D0E6 543 aaKnown RBP13.23□□□□□ -0.29
USP28-205ENST00000537706 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP28-205ENST00000537706 NLGN1Q8N2Q7 840 aa13.23□□□□□ -0.29
USP28-205ENST00000537706 MKRN1Q9UHC7 482 aaKnown RBP13.23□□□□□ -0.29
USP28-205ENST00000537706 CGNL1Q0VF96 1302 aa13.22□□□□□ -0.29
USP28-205ENST00000537706 USP54Q70EL1 1684 aa13.22□□□□□ -0.29
USP28-205ENST00000537706 IP6K1Q92551 441 aa13.22□□□□□ -0.29
USP28-205ENST00000537706 PARP3Q9Y6F1 533 aa13.21□□□□□ -0.29
USP28-205ENST00000537706 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.3
USP28-205ENST00000537706 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
USP28-205ENST00000537706 CCDC85CA6NKD9 419 aa13.2□□□□□ -0.3
USP28-205ENST00000537706 GNPATO15228 680 aa13.2□□□□□ -0.3
USP28-205ENST00000537706 TMF1P82094 1093 aa13.2□□□□□ -0.3
USP28-205ENST00000537706 DCAF5Q96JK2 942 aa13.2□□□□□ -0.3
USP28-205ENST00000537706 GLTPD2A6NH11 291 aa13.19□□□□□ -0.3
USP28-205ENST00000537706 RAPGEF4Q8WZA2 1011 aa13.19□□□□□ -0.3
USP28-205ENST00000537706 RGS19P49795 217 aa13.19□□□□□ -0.3
USP28-205ENST00000537706 PKD1L3Q7Z443 1732 aa13.18□□□□□ -0.3
USP28-205ENST00000537706 LBX1P52954 281 aa13.18□□□□□ -0.3
USP28-205ENST00000537706 NBPF1Q3BBV0 1214 aa13.18□□□□□ -0.3
USP28-205ENST00000537706 FAM208AQ9UK61 1670 aaKnown RBP13.18□□□□□ -0.3
USP28-205ENST00000537706 KIAA1210Q9ULL0 1709 aa13.18□□□□□ -0.3
USP28-205ENST00000537706 TATP17735 454 aaPredicted RBP13.17□□□□□ -0.3
USP28-205ENST00000537706 SMIM5Q71RC9 77 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 NME9Q86XW9 330 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 PCDH11XQ9BZA7 1347 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 PCDH11YQ9BZA8 1340 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 TRAPPC3LQ5T215 181 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 HDGFL2Q7Z4V5 671 aaPredicted RBP13.17□□□□□ -0.3
USP28-205ENST00000537706 AMIGO3Q86WK7 504 aa13.17□□□□□ -0.3
USP28-205ENST00000537706 CNTNAP1P78357 1384 aa13.16□□□□□ -0.3
USP28-205ENST00000537706 AMPHP49418 695 aa13.16□□□□□ -0.3
USP28-205ENST00000537706 DPY19L2Q6NUT2 758 aa13.16□□□□□ -0.3
USP28-205ENST00000537706 GOLGB1Q14789 3259 aaKnown RBP13.16□□□□□ -0.3
USP28-205ENST00000537706 RTCBQ9Y3I0 505 aaKnown RBP13.15□□□□□ -0.3
USP28-205ENST00000537706 LOC102724428A0A0B4J2F2 783 aa13.15□□□□□ -0.3
USP28-205ENST00000537706 LMNB1P20700 586 aa13.15□□□□□ -0.3
USP28-205ENST00000537706 SIK1P57059 783 aa13.15□□□□□ -0.3
USP28-205ENST00000537706 CHADLQ6NUI6 762 aa13.15□□□□□ -0.3
USP28-205ENST00000537706 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms