RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 RAPGEF4Q8WZA2 1011 aa17.97■□□□□ 0.47
PRKDC-206ENST00000536429 NCAPD2Q15021 1401 aa17.97■□□□□ 0.47
PRKDC-206ENST00000536429 TATP17735 454 aaPredicted RBP17.96■□□□□ 0.47
PRKDC-206ENST00000536429 PSDA5PKW4 1024 aaPredicted RBP17.95■□□□□ 0.46
PRKDC-206ENST00000536429 SBF2Q86WG5 1849 aa17.95■□□□□ 0.46
PRKDC-206ENST00000536429 PARD3Q8TEW0 1356 aa17.93■□□□□ 0.46
PRKDC-206ENST00000536429 PROM2Q8N271 834 aa17.93■□□□□ 0.46
PRKDC-206ENST00000536429 NPC1L1Q9UHC9 1359 aa17.92■□□□□ 0.46
PRKDC-206ENST00000536429 SHANK3Q9BYB0 1731 aa17.92■□□□□ 0.46
PRKDC-206ENST00000536429 PLSCR1O15162 318 aa17.92■□□□□ 0.46
PRKDC-206ENST00000536429 MTHFSP49914 203 aa17.92■□□□□ 0.46
PRKDC-206ENST00000536429 IGSF1Q8N6C5 1336 aa17.92■□□□□ 0.46
PRKDC-206ENST00000536429 CYP27B1O15528 508 aa17.91■□□□□ 0.46
PRKDC-206ENST00000536429 R3HDM1Q15032 1099 aaKnown RBP17.91■□□□□ 0.46
PRKDC-206ENST00000536429 IL13P35225 146 aa17.9■□□□□ 0.46
PRKDC-206ENST00000536429 PRIM1P49642 420 aaKnown RBP17.9■□□□□ 0.46
PRKDC-206ENST00000536429 AEBP1Q8IUX7 1158 aa17.9■□□□□ 0.46
PRKDC-206ENST00000536429 NHSQ6T4R5 1651 aa17.9■□□□□ 0.46
PRKDC-206ENST00000536429 PCDH11XQ9BZA7 1347 aa17.89■□□□□ 0.45
PRKDC-206ENST00000536429 PCDH11YQ9BZA8 1340 aa17.89■□□□□ 0.45
PRKDC-206ENST00000536429 RREB1Q92766 1687 aa17.89■□□□□ 0.45
PRKDC-206ENST00000536429 SYTL4Q96C24 671 aaPredicted RBP17.88■□□□□ 0.45
PRKDC-206ENST00000536429 ANO8Q9HCE9 1232 aaPredicted RBP17.88■□□□□ 0.45
PRKDC-206ENST00000536429 TXNRD1Q16881 649 aa17.87■□□□□ 0.45
PRKDC-206ENST00000536429 NUP188Q5SRE5 1749 aa17.86■□□□□ 0.45
PRKDC-206ENST00000536429 SULT6B1Q6IMI4 303 aa17.85■□□□□ 0.45
PRKDC-206ENST00000536429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.84■□□□□ 0.45
PRKDC-206ENST00000536429 SPG7Q9UQ90 795 aa17.84■□□□□ 0.45
PRKDC-206ENST00000536429 PKD1L3Q7Z443 1732 aa17.84■□□□□ 0.45
PRKDC-206ENST00000536429 LRRC4BQ9NT99 713 aa17.83■□□□□ 0.44
PRKDC-206ENST00000536429 BTAF1O14981 1849 aa17.83■□□□□ 0.44
PRKDC-206ENST00000536429 RGPD3A6NKT7 1758 aaPredicted RBP17.83■□□□□ 0.44
PRKDC-206ENST00000536429 RGPD4Q7Z3J3 1758 aa17.83■□□□□ 0.44
PRKDC-206ENST00000536429 DOT1LQ8TEK3 1739 aa17.83■□□□□ 0.44
PRKDC-206ENST00000536429 COL3A1P02461 1466 aaPredicted RBP17.82■□□□□ 0.44
PRKDC-206ENST00000536429 PHKG2P15735 406 aa17.82■□□□□ 0.44
PRKDC-206ENST00000536429 NKX1-1Q15270 411 aaPredicted RBP17.82■□□□□ 0.44
PRKDC-206ENST00000536429 NBPF14Q5TI25 921 aa17.82■□□□□ 0.44
PRKDC-206ENST00000536429 KDRP35968 1356 aa17.81■□□□□ 0.44
PRKDC-206ENST00000536429 KCNQ4P56696 695 aa17.81■□□□□ 0.44
PRKDC-206ENST00000536429 KAT6BQ8WYB5 2073 aa17.81■□□□□ 0.44
PRKDC-206ENST00000536429 DIAPH1O60610 1272 aaKnown RBP17.8■□□□□ 0.44
PRKDC-206ENST00000536429 HMOX1P09601 288 aa17.8■□□□□ 0.44
PRKDC-206ENST00000536429 MPRIPQ6WCQ1 1025 aa17.8■□□□□ 0.44
PRKDC-206ENST00000536429 PPP2R1AP30153 589 aa17.79■□□□□ 0.44
PRKDC-206ENST00000536429 IFNL2Q8IZJ0 200 aa17.79■□□□□ 0.44
PRKDC-206ENST00000536429 PDGFDQ9GZP0 370 aaPredicted RBP17.79■□□□□ 0.44
PRKDC-206ENST00000536429 TOGARAM1Q9Y4F4 1720 aa17.78■□□□□ 0.44
PRKDC-206ENST00000536429 DDX10Q13206 875 aaKnown RBP17.78■□□□□ 0.44
PRKDC-206ENST00000536429 PLEKHO1Q53GL0 409 aaPredicted RBP17.78■□□□□ 0.44
PRKDC-206ENST00000536429 ZNF530Q6P9A1 599 aaPredicted RBP17.78■□□□□ 0.44
PRKDC-206ENST00000536429 PIGBQ92521 554 aa17.78■□□□□ 0.44
PRKDC-206ENST00000536429 PLEKHG2Q9H7P9 1386 aa17.78■□□□□ 0.44
PRKDC-206ENST00000536429 ZNF827Q17R98 1081 aa17.77■□□□□ 0.44
PRKDC-206ENST00000536429 SLC15A2Q16348 729 aa17.76■□□□□ 0.43
PRKDC-206ENST00000536429 AMOTQ4VCS5 1084 aa17.76■□□□□ 0.43
PRKDC-206ENST00000536429 KDM6AO15550 1401 aaPredicted RBP17.75■□□□□ 0.43
PRKDC-206ENST00000536429 U2SURPO15042 1029 aaKnown RBP17.75■□□□□ 0.43
PRKDC-206ENST00000536429 ZEB1P37275 1124 aaPredicted RBP17.75■□□□□ 0.43
PRKDC-206ENST00000536429 STK32BQ9NY57 414 aa17.75■□□□□ 0.43
PRKDC-206ENST00000536429 PAPPAQ13219 1627 aa17.75■□□□□ 0.43
PRKDC-206ENST00000536429 SLC27A3Q5K4L6 730 aa17.74■□□□□ 0.43
PRKDC-206ENST00000536429 CCNL1Q9UK58 526 aaPredicted RBP17.73■□□□□ 0.43
PRKDC-206ENST00000536429 PALLDQ8WX93 1383 aa17.73■□□□□ 0.43
PRKDC-206ENST00000536429 AKT1S1Q96B36 256 aa17.72■□□□□ 0.43
PRKDC-206ENST00000536429 TMOD3Q9NYL9 352 aa17.72■□□□□ 0.43
PRKDC-206ENST00000536429 ASAP1Q9ULH1 1129 aa17.72■□□□□ 0.43
PRKDC-206ENST00000536429 MTHFSDQ2M296 383 aaKnown RBP17.71■□□□□ 0.43
PRKDC-206ENST00000536429 DCAF5Q96JK2 942 aa17.71■□□□□ 0.43
PRKDC-206ENST00000536429 HSP90AB1P08238 724 aaKnown RBP17.7■□□□□ 0.42
PRKDC-206ENST00000536429 C1orf141Q5JVX7 400 aa17.7■□□□□ 0.42
PRKDC-206ENST00000536429 CFAP53Q96M91 514 aa17.7■□□□□ 0.42
PRKDC-206ENST00000536429 ERVV-2B6SEH9 535 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 ZBTB7AO95365 584 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 ATG3Q9NT62 314 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 ITGB4P16144 1822 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 LY75O60449 1722 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 LRP5O75197 1615 aa17.69■□□□□ 0.42
PRKDC-206ENST00000536429 AKAP4Q5JQC9 854 aa17.68■□□□□ 0.42
PRKDC-206ENST00000536429 SMARCC1Q92922 1105 aaPredicted RBP17.68■□□□□ 0.42
PRKDC-206ENST00000536429 RSPH6AQ9H0K4 717 aa17.68■□□□□ 0.42
PRKDC-206ENST00000536429 LGR6Q9HBX8 967 aa17.68■□□□□ 0.42
PRKDC-206ENST00000536429 CASZ1Q86V15 1759 aa17.67■□□□□ 0.42
PRKDC-206ENST00000536429 CABP4P57796 275 aa17.67■□□□□ 0.42
PRKDC-206ENST00000536429 LOC102724428A0A0B4J2F2 783 aa17.66■□□□□ 0.42
PRKDC-206ENST00000536429 PRKAR2BP31323 418 aa17.66■□□□□ 0.42
PRKDC-206ENST00000536429 SIK1P57059 783 aa17.66■□□□□ 0.42
PRKDC-206ENST00000536429 PHACTR3Q96KR7 559 aa17.66■□□□□ 0.42
PRKDC-206ENST00000536429 PNPLA7Q6ZV29 1317 aa17.66■□□□□ 0.42
PRKDC-206ENST00000536429 U2AF1L5P0DN76 240 aaPredicted RBP17.65■□□□□ 0.42
PRKDC-206ENST00000536429 U2AF1Q01081 240 aaKnown RBP eCLIP17.65■□□□□ 0.42
PRKDC-206ENST00000536429 NFATC2IPQ8NCF5 419 aa17.65■□□□□ 0.42
PRKDC-206ENST00000536429 SLC4A9Q96Q91 983 aa17.65■□□□□ 0.42
PRKDC-206ENST00000536429 SPON1Q9HCB6 807 aa17.65■□□□□ 0.42
PRKDC-206ENST00000536429 NUDCQ9Y266 331 aa17.65■□□□□ 0.42
PRKDC-206ENST00000536429 ATF5Q9Y2D1 282 aaPredicted RBP17.65■□□□□ 0.42
PRKDC-206ENST00000536429 RNMTO43148 476 aaKnown RBP17.64■□□□□ 0.41
PRKDC-206ENST00000536429 ITPK1Q13572 414 aa17.64■□□□□ 0.41
PRKDC-206ENST00000536429 AMIGO3Q86WK7 504 aa17.64■□□□□ 0.41
PRKDC-206ENST00000536429 TFCP2L1Q9NZI6 479 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms