RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 LETM1O95202 739 aaPredicted RBP4.67□□□□□ -1.66
MCF2-210ENST00000536274 KIF20AO95235 890 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 PWP2Q15269 919 aaKnown RBP4.67□□□□□ -1.66
MCF2-210ENST00000536274 OTUD5Q96G74 571 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 CHAMP1Q96JM3 812 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 PTCH1Q13635 1447 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 E9PCH4 1651 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 DYNC1I1O14576 645 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 NBPF8Q3BBV2 869 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 TMEM121BQ9BXQ6 578 aaPredicted RBP4.66□□□□□ -1.66
MCF2-210ENST00000536274 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.66□□□□□ -1.66
MCF2-210ENST00000536274 PCDHB8Q9UN66 801 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 MYO5BQ9ULV0 1848 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 NALCNQ8IZF0 1738 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 HDAC5Q9UQL6 1122 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 ABCC5O15440 1437 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 CDC42BPGQ6DT37 1551 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 NWD2Q9ULI1 1742 aa4.66□□□□□ -1.66
MCF2-210ENST00000536274 PATL2C9JE40 543 aaKnown RBP4.66□□□□□ -1.66
MCF2-210ENST00000536274 GTPBP4Q9BZE4 634 aaKnown RBP4.66□□□□□ -1.66
MCF2-210ENST00000536274 CENPQQ7L2Z9 268 aaPredicted RBP4.65□□□□□ -1.66
MCF2-210ENST00000536274 ZNF526Q8TF50 670 aaPredicted RBP4.65□□□□□ -1.66
MCF2-210ENST00000536274 L3MBTL2Q969R5 705 aa4.65□□□□□ -1.66
MCF2-210ENST00000536274 MSH6P52701 1360 aa4.65□□□□□ -1.66
MCF2-210ENST00000536274 ARID3CA6NKF2 412 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 APPP05067 770 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 HDGFP51858 240 aaKnown RBP4.65□□□□□ -1.67
MCF2-210ENST00000536274 HNRNPMP52272 730 aaKnown RBP eCLIP4.65□□□□□ -1.67
MCF2-210ENST00000536274 CCDC173Q0VFZ6 552 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 RNF214Q8ND24 703 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 TNPO1Q92973 898 aaKnown RBP4.65□□□□□ -1.67
MCF2-210ENST00000536274 ANKRD30AQ9BXX3 1397 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 KIF15Q9NS87 1388 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 ASXL1Q8IXJ9 1541 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 MFAP1P55081 439 aaKnown RBP4.65□□□□□ -1.67
MCF2-210ENST00000536274 SASS6Q6UVJ0 657 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.65□□□□□ -1.67
MCF2-210ENST00000536274 RBSNQ9H1K0 784 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 RYDENQ9NUL5 291 aaKnown RBP4.65□□□□□ -1.67
MCF2-210ENST00000536274 EID1Q9Y6B2 187 aa4.65□□□□□ -1.67
MCF2-210ENST00000536274 NEXMIFQ5QGS0 1516 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 TSPY4P0CV99 314 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 TSPY10P0CW01 314 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 NKX1-1Q15270 411 aaPredicted RBP4.64□□□□□ -1.67
MCF2-210ENST00000536274 SLAIN1Q8ND83 568 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 RBM27Q9P2N5 1060 aaKnown RBP4.64□□□□□ -1.67
MCF2-210ENST00000536274 RGPD3A6NKT7 1758 aaPredicted RBP4.64□□□□□ -1.67
MCF2-210ENST00000536274 RGPD4Q7Z3J3 1758 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 NAA30Q147X3 362 aaPredicted RBP4.64□□□□□ -1.67
MCF2-210ENST00000536274 PPP1R9BQ96SB3 815 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 CHIC2Q9UKJ5 165 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 IFT172Q9UG01 1749 aa4.64□□□□□ -1.67
MCF2-210ENST00000536274 BCL2L12Q9HB09 334 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 ST7Q9NRC1 585 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 CHMP5Q9NZZ3 219 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 TBX22Q9Y458 520 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 ADAMTS13Q76LX8 1427 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 KIF1BO60333 1816 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 TNNT1P13805 278 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 ZNF772Q68DY9 489 aaPredicted RBP4.63□□□□□ -1.67
MCF2-210ENST00000536274 HS6ST3Q8IZP7 471 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 TRPC6Q9Y210 931 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 RIMBP2O15034 1052 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 KIF3BO15066 747 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 BCAR3O75815 825 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 GYS2P54840 703 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 NLRP6P59044 892 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 CAVIN1Q6NZI2 390 aaKnown RBP4.63□□□□□ -1.67
MCF2-210ENST00000536274 TOMM22Q9NS69 142 aa4.63□□□□□ -1.67
MCF2-210ENST00000536274 NOL7Q9UMY1 257 aaKnown RBP4.63□□□□□ -1.67
MCF2-210ENST00000536274 LRP6O75581 1613 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 SSFA2P28290 1259 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 RRP7BPQ9NSQ0 103 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 ADGRL3Q9HAR2 1447 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 TMEM94Q12767 1356 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 ZNF500O60304 480 aaPredicted RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 PRIM1P49642 420 aaKnown RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 RBM25P49756 843 aaKnown RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 PDCL2Q8N4E4 241 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 TBC1D32Q96NH3 1257 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 DDX49Q9Y6V7 483 aaKnown RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 RIMS2Q9UQ26 1411 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 PPLO60437 1756 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 FOXD4L5Q5VV16 416 aaPredicted RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 FOXD4L4Q8WXT5 416 aaPredicted RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 RGS17Q9UGC6 210 aaPredicted RBP4.62□□□□□ -1.67
MCF2-210ENST00000536274 TNNQ9UQP3 1299 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 ZKSCAN5Q9Y2L8 839 aa4.62□□□□□ -1.67
MCF2-210ENST00000536274 ADGRB2O60241 1585 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 TECPR2O15040 1411 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 CD2BP2O95400 341 aaKnown RBP4.61□□□□□ -1.67
MCF2-210ENST00000536274 TERF1P54274 439 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 GGT6Q6P531 493 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 MTERF4Q7Z6M4 381 aaKnown RBP4.61□□□□□ -1.67
MCF2-210ENST00000536274 MYRIPQ8NFW9 859 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 RGPD1P0DJD0 1748 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 ABCA3Q99758 1704 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 AK9Q5TCS8 1911 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 PANK1Q8TE04 598 aa4.61□□□□□ -1.67
MCF2-210ENST00000536274 TTC12Q9H892 705 aaPredicted RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms