RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 RNF40O75150 1001 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 ZPR1O75312 459 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 COPS2P61201 443 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 EXOC6Q8TAG9 804 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 IPO9Q96P70 1041 aaKnown RBP7.57□□□□□ -1.2
VPS33A-203ENST00000536212 RSPH6AQ9H0K4 717 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 TRAPPC8Q9Y2L5 1435 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 CHD1O14646 1710 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 TRPM2O94759 1503 aa7.57□□□□□ -1.2
VPS33A-203ENST00000536212 MADDQ8WXG6 1647 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 ERCC6L2Q5T890 1561 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 SPRYD7Q5W111 196 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 ZNF598Q86UK7 904 aaKnown RBP7.56□□□□□ -1.2
VPS33A-203ENST00000536212 ARID3AQ99856 593 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 IQGAP1P46940 1657 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 CLASP1Q7Z460 1538 aa7.56□□□□□ -1.2
VPS33A-203ENST00000536212 SCAF11Q99590 1463 aaKnown RBP7.55□□□□□ -1.2
VPS33A-203ENST00000536212 VWDEQ8N2E2 1590 aa7.55□□□□□ -1.2
VPS33A-203ENST00000536212 PLEKHG3A1L390 1219 aa7.55□□□□□ -1.2
VPS33A-203ENST00000536212 RNF223E7ERA6 249 aa7.55□□□□□ -1.2
VPS33A-203ENST00000536212 ANP32AP39687 249 aaKnown RBP7.55□□□□□ -1.2
VPS33A-203ENST00000536212 CDCA8Q53HL2 280 aa7.55□□□□□ -1.2
VPS33A-203ENST00000536212 NUDT18Q6ZVK8 323 aa7.55□□□□□ -1.2
VPS33A-203ENST00000536212 RBM27Q9P2N5 1060 aaKnown RBP7.55□□□□□ -1.2
VPS33A-203ENST00000536212 ZNF521Q96K83 1311 aa7.54□□□□□ -1.2
VPS33A-203ENST00000536212 PIK3C2GO75747 1445 aa7.54□□□□□ -1.2
VPS33A-203ENST00000536212 ZCCHC11Q5TAX3 1644 aaKnown RBP7.54□□□□□ -1.2
VPS33A-203ENST00000536212 CC2D1BQ5T0F9 858 aaKnown RBP7.54□□□□□ -1.2
VPS33A-203ENST00000536212 GIGYF2Q6Y7W6 1299 aaKnown RBP7.54□□□□□ -1.2
VPS33A-203ENST00000536212 SYNMO15061 1565 aa7.54□□□□□ -1.2
VPS33A-203ENST00000536212 ZFYVE16Q7Z3T8 1539 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 DEPDC5O75140 1603 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 PPP2R1AP30153 589 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 CLCN1P35523 988 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 SLF2Q8IX21 1173 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 BACH2Q9BYV9 841 aa7.53□□□□□ -1.2
VPS33A-203ENST00000536212 SPAG9O60271 1321 aaKnown RBP7.52□□□□□ -1.2
VPS33A-203ENST00000536212 ASXL1Q8IXJ9 1541 aa7.52□□□□□ -1.2
VPS33A-203ENST00000536212 SPHKAPQ2M3C7 1700 aa7.52□□□□□ -1.2
VPS33A-203ENST00000536212 SENP3-EIF4A1A0A087X0R7 540 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 OATP04181 439 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 PADI6Q6TGC4 694 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 ANKLE1Q8NAG6 615 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 GPCPD1Q9NPB8 672 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 KIAA1210Q9ULL0 1709 aa7.52□□□□□ -1.21
VPS33A-203ENST00000536212 TET3O43151 1660 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 MYOM2P54296 1465 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 PLEKHH1Q9ULM0 1364 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 GDF9O60383 454 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 MDM2Q00987 491 aaPredicted RBP7.51□□□□□ -1.21
VPS33A-203ENST00000536212 SWT1Q5T5J6 900 aaKnown RBP7.51□□□□□ -1.21
VPS33A-203ENST00000536212 DUSP27Q5VZP5 1158 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 TRMT2AQ8IZ69 625 aaKnown RBP7.51□□□□□ -1.21
VPS33A-203ENST00000536212 NGEFQ8N5V2 710 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 CRBNQ96SW2 442 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 REPIN1Q9BWE0 567 aaKnown RBP7.51□□□□□ -1.21
VPS33A-203ENST00000536212 PRR14Q9BWN1 585 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 ADAMTS8Q9UP79 889 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 KNSTRNQ9Y448 316 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 CEP152O94986 1710 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 CLTCL1P53675 1640 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 KDM2BQ8NHM5 1336 aa7.51□□□□□ -1.21
VPS33A-203ENST00000536212 INO80Q9ULG1 1556 aaPredicted RBP7.5□□□□□ -1.21
VPS33A-203ENST00000536212 FAM187AA6NFU0 413 aa7.5□□□□□ -1.21
VPS33A-203ENST00000536212 DEKP35659 375 aaKnown RBP7.5□□□□□ -1.21
VPS33A-203ENST00000536212 PHOX2BQ99453 314 aa7.5□□□□□ -1.21
VPS33A-203ENST00000536212 GOPCQ9HD26 462 aa7.5□□□□□ -1.21
VPS33A-203ENST00000536212 AAASQ9NRG9 546 aa7.5□□□□□ -1.21
VPS33A-203ENST00000536212 SALL2Q9Y467 1007 aaPredicted RBP7.5□□□□□ -1.21
VPS33A-203ENST00000536212 ABCA9Q8IUA7 1624 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 EIF3AQ14152 1382 aaKnown RBP7.49□□□□□ -1.21
VPS33A-203ENST00000536212 KANK1Q14678 1352 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 SBNO2Q9Y2G9 1366 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 SLFN5Q08AF3 891 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 FAM161AQ3B820 660 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 ZNF697Q5TEC3 545 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 METTL3Q86U44 580 aaKnown RBP7.49□□□□□ -1.21
VPS33A-203ENST00000536212 TTC13Q8NBP0 860 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 STK17AQ9UEE5 414 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 PCDHB3Q9Y5E6 796 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 ADGRG1Q9Y653 693 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 NRXN1Q9ULB1 1477 aa7.49□□□□□ -1.21
VPS33A-203ENST00000536212 ATP7AQ04656 1500 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 LMTK2Q8IWU2 1503 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 MYOM1P52179 1685 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 PLIN1O60240 522 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 WDR43Q15061 677 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS33A-203ENST00000536212 LIAT1Q6ZQX7 453 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 AFAP1Q8N556 730 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 MROH1Q8NDA8 1641 aa7.48□□□□□ -1.21
VPS33A-203ENST00000536212 ST8SIA5O15466 376 aa7.47□□□□□ -1.21
VPS33A-203ENST00000536212 SLC4A3P48751 1232 aa7.47□□□□□ -1.21
VPS33A-203ENST00000536212 CENPQQ7L2Z9 268 aaPredicted RBP7.47□□□□□ -1.21
VPS33A-203ENST00000536212 PXYLP1Q8TE99 480 aa7.47□□□□□ -1.21
VPS33A-203ENST00000536212 MAP3K4Q9Y6R4 1608 aa7.47□□□□□ -1.21
VPS33A-203ENST00000536212 ERVK-7P63135 1459 aa7.47□□□□□ -1.21
VPS33A-203ENST00000536212 MYO3AQ8NEV4 1616 aa7.46□□□□□ -1.21
VPS33A-203ENST00000536212 TNFRSF10AO00220 468 aa7.46□□□□□ -1.22
VPS33A-203ENST00000536212 WFS1O76024 890 aa7.46□□□□□ -1.22
VPS33A-203ENST00000536212 SSTR3P32745 418 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms