RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 CHMP4BQ9H444 224 aaKnown RBP16.47■□□□□ 0.23
HDAC4-214ENST00000535493 SIGLEC1Q9BZZ2 1709 aa16.46■□□□□ 0.23
HDAC4-214ENST00000535493 F6X3S4 739 aa16.46■□□□□ 0.23
HDAC4-214ENST00000535493 DTNBO60941 627 aa16.46■□□□□ 0.23
HDAC4-214ENST00000535493 CEP85Q6P2H3 762 aa16.46■□□□□ 0.23
HDAC4-214ENST00000535493 GDPD2Q9HCC8 539 aa16.46■□□□□ 0.23
HDAC4-214ENST00000535493 PIK3R4Q99570 1358 aa16.46■□□□□ 0.22
HDAC4-214ENST00000535493 TPM2P07951 284 aa16.46■□□□□ 0.22
HDAC4-214ENST00000535493 NEK4P51957 841 aa16.46■□□□□ 0.22
HDAC4-214ENST00000535493 ABCC3O15438 1527 aa16.45■□□□□ 0.22
HDAC4-214ENST00000535493 ST18O60284 1047 aa16.45■□□□□ 0.22
HDAC4-214ENST00000535493 PTPRMP28827 1452 aa16.44■□□□□ 0.22
HDAC4-214ENST00000535493 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
HDAC4-214ENST00000535493 NUTM2FA1L443 756 aa16.44■□□□□ 0.22
HDAC4-214ENST00000535493 ANKRD44Q8N8A2 993 aa16.44■□□□□ 0.22
HDAC4-214ENST00000535493 EXOC6BQ9Y2D4 811 aa16.43■□□□□ 0.22
HDAC4-214ENST00000535493 JARID2Q92833 1246 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-214ENST00000535493 MSH6P52701 1360 aa16.43■□□□□ 0.22
HDAC4-214ENST00000535493 SULT6B1Q6IMI4 303 aa16.42■□□□□ 0.22
HDAC4-214ENST00000535493 KNDC1Q76NI1 1749 aa16.42■□□□□ 0.22
HDAC4-214ENST00000535493 POGZQ7Z3K3 1410 aa16.42■□□□□ 0.22
HDAC4-214ENST00000535493 PALD1Q9ULE6 856 aa16.42■□□□□ 0.22
HDAC4-214ENST00000535493 SLC4A2P04920 1241 aa16.41■□□□□ 0.22
HDAC4-214ENST00000535493 NOL7Q9UMY1 257 aaKnown RBP16.41■□□□□ 0.22
HDAC4-214ENST00000535493 G2E3Q7L622 706 aa16.41■□□□□ 0.22
HDAC4-214ENST00000535493 NECTIN2Q92692 538 aa16.41■□□□□ 0.22
HDAC4-214ENST00000535493 TMX3Q96JJ7 454 aa16.41■□□□□ 0.22
HDAC4-214ENST00000535493 UPF3BQ9BZI7 483 aaKnown RBP16.41■□□□□ 0.22
HDAC4-214ENST00000535493 PDCL3Q9H2J4 239 aa16.41■□□□□ 0.22
HDAC4-214ENST00000535493 CASC1Q6TDU7 716 aa16.4■□□□□ 0.22
HDAC4-214ENST00000535493 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.4■□□□□ 0.22
HDAC4-214ENST00000535493 IBTKQ9P2D0 1353 aaPredicted RBP16.4■□□□□ 0.22
HDAC4-214ENST00000535493 RIMS2Q9UQ26 1411 aa16.4■□□□□ 0.22
HDAC4-214ENST00000535493 UQCRHLA0A096LP55 91 aa16.39■□□□□ 0.22
HDAC4-214ENST00000535493 UQCRHP07919 91 aa16.39■□□□□ 0.22
HDAC4-214ENST00000535493 ZNF830Q96NB3 372 aaPredicted RBP16.39■□□□□ 0.22
HDAC4-214ENST00000535493 LARP6Q9BRS8 491 aaKnown RBP16.39■□□□□ 0.22
HDAC4-214ENST00000535493 SLC52A1Q9NWF4 448 aa16.39■□□□□ 0.22
HDAC4-214ENST00000535493 ATP10DQ9P241 1426 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 ERC2O15083 957 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 TXNDC2Q86VQ3 553 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.39■□□□□ 0.21
HDAC4-214ENST00000535493 RILPL2Q969X0 211 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 PDLIM2Q96JY6 352 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
HDAC4-214ENST00000535493 FOXO3O43524 673 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 LRSAM1Q6UWE0 723 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 CWC22Q9HCG8 908 aaKnown RBP16.38■□□□□ 0.21
HDAC4-214ENST00000535493 MAP2P11137 1827 aaKnown RBP16.38■□□□□ 0.21
HDAC4-214ENST00000535493 ZFYVE9O95405 1425 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 GADD45BO75293 160 aaPredicted RBP16.38■□□□□ 0.21
HDAC4-214ENST00000535493 REC8O95072 547 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 TSC1Q92574 1164 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 COG3Q96JB2 828 aa16.38■□□□□ 0.21
HDAC4-214ENST00000535493 TRIM6-TRIM34B2RNG4 842 aa16.37■□□□□ 0.21
HDAC4-214ENST00000535493 PDE1AP54750 535 aa16.37■□□□□ 0.21
HDAC4-214ENST00000535493 RPAP2Q8IXW5 612 aaPredicted RBP16.37■□□□□ 0.21
HDAC4-214ENST00000535493 ANO2Q9NQ90 1003 aa16.37■□□□□ 0.21
HDAC4-214ENST00000535493 ZKSCAN5Q9Y2L8 839 aa16.37■□□□□ 0.21
HDAC4-214ENST00000535493 HECW2Q9P2P5 1572 aa16.37■□□□□ 0.21
HDAC4-214ENST00000535493 PIK3C2BO00750 1634 aa16.36■□□□□ 0.21
HDAC4-214ENST00000535493 PTMAP06454 111 aaKnown RBP16.36■□□□□ 0.21
HDAC4-214ENST00000535493 ARHGEF40Q8TER5 1519 aa16.36■□□□□ 0.21
HDAC4-214ENST00000535493 MYO5BQ9ULV0 1848 aa16.36■□□□□ 0.21
HDAC4-214ENST00000535493 MAP4K4O95819 1239 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-214ENST00000535493 LMOD3Q0VAK6 560 aa16.35■□□□□ 0.21
HDAC4-214ENST00000535493 C17orf53Q8N3J3 647 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-214ENST00000535493 RGS12O14924 1447 aa16.35■□□□□ 0.21
HDAC4-214ENST00000535493 HSP90AB2PQ58FF8 381 aa16.34■□□□□ 0.21
HDAC4-214ENST00000535493 UNC5CLQ8IV45 518 aa16.34■□□□□ 0.21
HDAC4-214ENST00000535493 IL25Q9H293 177 aa16.34■□□□□ 0.21
HDAC4-214ENST00000535493 FAM177BA6PVY3 158 aa16.34■□□□□ 0.21
HDAC4-214ENST00000535493 EIF4A2Q14240 407 aaKnown RBP16.34■□□□□ 0.21
HDAC4-214ENST00000535493 MLH3Q9UHC1 1453 aa16.34■□□□□ 0.21
HDAC4-214ENST00000535493 ZNF500O60304 480 aaPredicted RBP16.33■□□□□ 0.21
HDAC4-214ENST00000535493 MLECQ14165 292 aa16.33■□□□□ 0.2
HDAC4-214ENST00000535493 NUDT16Q96DE0 195 aaKnown RBP16.33■□□□□ 0.2
HDAC4-214ENST00000535493 YEATS2Q9ULM3 1422 aa16.32■□□□□ 0.2
HDAC4-214ENST00000535493 PNMA6EA0A0J9YXQ4 647 aa16.32■□□□□ 0.2
HDAC4-214ENST00000535493 CHL1O00533 1208 aa16.32■□□□□ 0.2
HDAC4-214ENST00000535493 DNTTIP2Q5QJE6 756 aaKnown RBP16.32■□□□□ 0.2
HDAC4-214ENST00000535493 IL1RAPL2Q9NP60 686 aa16.32■□□□□ 0.2
HDAC4-214ENST00000535493 WASLO00401 505 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-214ENST00000535493 PLCB2Q00722 1185 aa16.31■□□□□ 0.2
HDAC4-214ENST00000535493 BRD1O95696 1058 aa16.31■□□□□ 0.2
HDAC4-214ENST00000535493 ESYT1Q9BSJ8 1104 aa16.31■□□□□ 0.2
HDAC4-214ENST00000535493 PRDM10Q9NQV6 1147 aa16.31■□□□□ 0.2
HDAC4-214ENST00000535493 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.31■□□□□ 0.2
HDAC4-214ENST00000535493 HS1BP3Q53T59 392 aa16.3■□□□□ 0.2
HDAC4-214ENST00000535493 ANKRD26Q9UPS8 1709 aa16.3■□□□□ 0.2
HDAC4-214ENST00000535493 DLG5Q8TDM6 1919 aa16.3■□□□□ 0.2
HDAC4-214ENST00000535493 USP48Q86UV5 1035 aa16.3■□□□□ 0.2
HDAC4-214ENST00000535493 TSPY26PQ9H489 355 aa16.29■□□□□ 0.2
HDAC4-214ENST00000535493 USP25Q9UHP3 1055 aa16.29■□□□□ 0.2
HDAC4-214ENST00000535493 TTC12Q9H892 705 aaPredicted RBP16.29■□□□□ 0.2
HDAC4-214ENST00000535493 CCDC39Q9UFE4 941 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 TSPYL4Q9UJ04 414 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 ALKQ9UM73 1620 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 CDC42BPGQ6DT37 1551 aa16.28■□□□□ 0.2
HDAC4-214ENST00000535493 HMMRO75330 724 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms